Galaxy admins, One of you has probably seen the below error before, can someone explain? for background, we're running our instance on a AWS server (if that makes a difference)
galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'root' controller, class: Report galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'home' controller, class: HomePage galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,548 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,549 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,552 Enabling 'x-forwarded-host' middleware Starting server in PID 14676. Traceback (most recent call last): File "./scripts/paster.py", line 26, in <module> serve.run() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1067, in invoke exit_code = runner.run(args) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 223, in run result = self.command() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 673, in command serve() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 650, in serve server(app) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 234, in server_wrapper **context.local_conf) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 94, in fix_call val = callable(*args, **kw) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1361, in server_runner serve(wsgi_app, **kwargs) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1310, in serve request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/SocketServer.py", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/SocketServer.py", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args) socket.error: [Errno 99] Cannot assign requested address Removing PID file reports_webapp.pid
Thanks, Cris
Hi Cris,
what `host` and `port` is in your reports.ini config file? This stacktrace would point at something already running at the same port.
Martin
On Thu, Sep 1, 2016 at 12:36 PM Cristel Thomas cristel.thomas@gmail.com wrote:
Galaxy admins, One of you has probably seen the below error before, can someone explain? for background, we're running our instance on a AWS server (if that makes a difference)
galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'root' controller, class: Report galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'home' controller, class: HomePage galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,548 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,549 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,552 Enabling 'x-forwarded-host' middleware Starting server in PID 14676. Traceback (most recent call last): File "./scripts/paster.py", line 26, in <module> serve.run() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1067, in invoke exit_code = runner.run(args) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 223, in run result = self.command() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 673, in command serve() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 650, in serve server(app) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 234, in server_wrapper **context.local_conf) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 94, in fix_call val = callable(*args, **kw) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1361, in server_runner serve(wsgi_app, **kwargs) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1310, in serve request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/SocketServer.py", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/SocketServer.py", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args) socket.error: [Errno 99] Cannot assign requested address Removing PID file reports_webapp.pid
Thanks, Cris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Martin, the config is: port = 8081 host = 0.0.0.0
this is the first time we have that issue though, and the instance has been running just fine until now. I don't think we've changed anything.
On Thu, Sep 1, 2016 at 12:40 PM, Martin Čech marten@bx.psu.edu wrote:
Hi Cris,
what `host` and `port` is in your reports.ini config file? This stacktrace would point at something already running at the same port.
Martin
On Thu, Sep 1, 2016 at 12:36 PM Cristel Thomas cristel.thomas@gmail.com wrote:
Galaxy admins, One of you has probably seen the below error before, can someone explain? for background, we're running our instance on a AWS server (if that makes a difference)
galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'root' controller, class: Report galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'home' controller, class: HomePage galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,548 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,549 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,552 Enabling 'x-forwarded-host' middleware Starting server in PID 14676. Traceback (most recent call last): File "./scripts/paster.py", line 26, in <module> serve.run() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1067, in invoke exit_code = runner.run(args) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 223, in run result = self.command() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 673, in command serve() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 650, in serve server(app) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 234, in server_wrapper **context.local_conf) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 94, in fix_call val = callable(*args, **kw) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1361, in server_runner serve(wsgi_app, **kwargs) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1310, in serve request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/SocketServer.py", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/SocketServer.py", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args) socket.error: [Errno 99] Cannot assign requested address Removing PID file reports_webapp.pid
Thanks, Cris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Cris: please check whether some previous instance of Reports isn't still running and/or check your ports using e.g. `netstat` M.
On Thu, Sep 1, 2016 at 1:19 PM Cristel Thomas cristel.thomas@gmail.com wrote:
Hi Martin, the config is: port = 8081 host = 0.0.0.0
this is the first time we have that issue though, and the instance has been running just fine until now. I don't think we've changed anything.
On Thu, Sep 1, 2016 at 12:40 PM, Martin Čech marten@bx.psu.edu wrote:
Hi Cris,
what `host` and `port` is in your reports.ini config file? This stacktrace would point at something already running at the same port.
Martin
On Thu, Sep 1, 2016 at 12:36 PM Cristel Thomas cristel.thomas@gmail.com wrote:
Galaxy admins, One of you has probably seen the below error before, can someone explain? for background, we're running our instance on a AWS server (if that makes a difference)
galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'root' controller, class: Report galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'home' controller, class: HomePage galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,548 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,549 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,552 Enabling 'x-forwarded-host' middleware Starting server in PID 14676. Traceback (most recent call last): File "./scripts/paster.py", line 26, in <module> serve.run() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1067, in invoke exit_code = runner.run(args) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 223, in run result = self.command() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 673, in command serve() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 650, in serve server(app) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 234, in server_wrapper **context.local_conf) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 94, in fix_call val = callable(*args, **kw) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1361, in server_runner serve(wsgi_app, **kwargs) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1310, in serve request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/SocketServer.py", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/SocketServer.py", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args) socket.error: [Errno 99] Cannot assign requested address Removing PID file reports_webapp.pid
Thanks, Cris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
No previous instance of reports running, and I'm not sure what to check as far as ports. our AWS guy said it might be an issue with AWS but I don't know enough about all this to confirm (or to know how to confirm).
thanks for your help.
On Thu, Sep 1, 2016 at 1:39 PM, Martin Čech marten@bx.psu.edu wrote:
Cris: please check whether some previous instance of Reports isn't still running and/or check your ports using e.g. `netstat` M.
On Thu, Sep 1, 2016 at 1:19 PM Cristel Thomas cristel.thomas@gmail.com wrote:
Hi Martin, the config is: port = 8081 host = 0.0.0.0
this is the first time we have that issue though, and the instance has been running just fine until now. I don't think we've changed anything.
On Thu, Sep 1, 2016 at 12:40 PM, Martin Čech marten@bx.psu.edu wrote:
Hi Cris,
what `host` and `port` is in your reports.ini config file? This stacktrace would point at something already running at the same port.
Martin
On Thu, Sep 1, 2016 at 12:36 PM Cristel Thomas cristel.thomas@gmail.com wrote:
Galaxy admins, One of you has probably seen the below error before, can someone explain? for background, we're running our instance on a AWS server (if that makes a difference)
galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'root' controller, class: Report galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'home' controller, class: HomePage galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,548 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,549 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,552 Enabling 'x-forwarded-host' middleware Starting server in PID 14676. Traceback (most recent call last): File "./scripts/paster.py", line 26, in <module> serve.run() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1067, in invoke exit_code = runner.run(args) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 223, in run result = self.command() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 673, in command serve() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 650, in serve server(app) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 234, in server_wrapper **context.local_conf) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 94, in fix_call val = callable(*args, **kw) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1361, in server_runner serve(wsgi_app, **kwargs) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1310, in serve request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/SocketServer.py", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/SocketServer.py", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args) socket.error: [Errno 99] Cannot assign requested address Removing PID file reports_webapp.pid
Thanks, Cris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Cris: maybe check what ports are configured for your Galaxy and/or Tool Shed to make sure they are not in conflict. I don't know enough about AWS to help you more, maybe someone else will jump in.
M.
On Thu, Sep 1, 2016 at 1:48 PM Cristel Thomas cristel.thomas@gmail.com wrote:
No previous instance of reports running, and I'm not sure what to check as far as ports. our AWS guy said it might be an issue with AWS but I don't know enough about all this to confirm (or to know how to confirm).
thanks for your help.
On Thu, Sep 1, 2016 at 1:39 PM, Martin Čech marten@bx.psu.edu wrote:
Cris: please check whether some previous instance of Reports isn't still running and/or check your ports using e.g. `netstat` M.
On Thu, Sep 1, 2016 at 1:19 PM Cristel Thomas cristel.thomas@gmail.com wrote:
Hi Martin, the config is: port = 8081 host = 0.0.0.0
this is the first time we have that issue though, and the instance has been running just fine until now. I don't think we've changed anything.
On Thu, Sep 1, 2016 at 12:40 PM, Martin Čech marten@bx.psu.edu wrote:
Hi Cris,
what `host` and `port` is in your reports.ini config file? This stacktrace would point at something already running at the same port.
Martin
On Thu, Sep 1, 2016 at 12:36 PM Cristel Thomas < cristel.thomas@gmail.com> wrote:
Galaxy admins, One of you has probably seen the below error before, can someone explain? for background, we're running our instance on a AWS server (if that makes a difference)
galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,545 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,546 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'root' controller, class: Report galaxy.web.framework.base DEBUG 2016-05-19 12:43:40,547 Enabling 'home' controller, class: HomePage galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,548 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,549 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,551 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2016-05-19 12:43:40,552 Enabling 'x-forwarded-host' middleware Starting server in PID 14676. Traceback (most recent call last): File "./scripts/paster.py", line 26, in <module> serve.run() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 1067, in invoke exit_code = runner.run(args) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 223, in run result = self.command() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 673, in command serve() File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/serve.py", line 650, in serve server(app) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 234, in server_wrapper **context.local_conf) File "/home/galaxy/immport-galaxy/lib/galaxy/util/pastescript/loadwsgi.py", line 94, in fix_call val = callable(*args, **kw) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1361, in server_runner serve(wsgi_app, **kwargs) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1310, in serve request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/galaxy/immport-galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/SocketServer.py", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/SocketServer.py", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args) socket.error: [Errno 99] Cannot assign requested address Removing PID file reports_webapp.pid
Thanks, Cris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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Cristel Thomas -
Martin Čech