Is it possible to specify the torque host as part of a DRMAA runner URL? I haven't been able to find a *native_options *parameter to allow for this. I'm using the old style cluster configuration.
*drmaa://[native_options]/* * * Also, I haven't been able to find a list of native_options anywhere. Does such a list exist? If so, where?
Bart,
I believe drmaa://-q somehost@queue-name
will work. However I could be very wrong. It has been a while since I messed with the actual drmaa runners.
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Wed, Jun 26, 2013 at 1:28 PM, Bart Gottschalk bgottsch@umn.edu wrote:
Is it possible to specify the torque host as part of a DRMAA runner URL? I haven't been able to find a native_options parameter to allow for this. I'm using the old style cluster configuration.
drmaa://[native_options]/
Also, I haven't been able to find a list of native_options anywhere. Does such a list exist? If so, where?
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Adam,
Thanks for your response. Specifying -q queue@host doesn't achieve what I'm looking to do. In my case, I'm trying to set up a drmaa runner that will send the job to a torque host that is different from the one that is set in /var/spool/torque/server_name on the client host. Configuring the drmaa runner with -q queue@host doesn't do this for me. It still sends the job to the torque host specified in /var/spool/torque/server_name.
Any other suggestions?
- Bart
On Wed, Jun 26, 2013 at 4:06 PM, Adam Brenner aebrenne@uci.edu wrote:
Bart,
I believe drmaa://-q somehost@queue-name
will work. However I could be very wrong. It has been a while since I messed with the actual drmaa runners.
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Wed, Jun 26, 2013 at 1:28 PM, Bart Gottschalk bgottsch@umn.edu wrote:
Is it possible to specify the torque host as part of a DRMAA runner URL?
I
haven't been able to find a native_options parameter to allow for this.
I'm
using the old style cluster configuration.
drmaa://[native_options]/
Also, I haven't been able to find a list of native_options anywhere.
Does
such a list exist? If so, where?
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
I haven't been able to find a way to make the drmaa runner work in this situation. I'm going to move on to trying this with a pbs runner instead. I will post to this thread if this works for me.
- Bart
I've had success using the pbs runner rather than drmaa runner for this case. It's quite straightforward to specify the pbs_server for the pbs runner. Works just as the documentation indicates.
- Bart
On Tue, Jul 9, 2013 at 1:46 PM, Bart Gottschalk bgottsch@umn.edu wrote:
I haven't been able to find a way to make the drmaa runner work in this situation. I'm going to move on to trying this with a pbs runner instead. I will post to this thread if this works for me.
- Bart
galaxy-dev@lists.galaxyproject.org
-
Adam Brenner -
Bart Gottschalk