galaxy-commits

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galaxy-dist commit 1dc82a345db2: Updated indel analysis tools: fixed counting bugs in indel_analysis and improved help section; standardized CIGAR regex across tools; updated test files for several tools
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit 0f5eb93a7d61: lims: look and feel improvements.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit 84671d8f4684: Fix for sqlalchemy-migrate scripts so they will function across webapps - galaxy is the default, so no command line changes necessary when migrating the db.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit 28e629ad5949: Upgrade pbs_python to 4.1.0 and use PBS exit_status (if keep_completed is set) so we can detect PBS failures. This is a reapplication of 3786:48432330228e, which was backed out in a subsequent revision due to crashes experienced in pbs_python 2.9.8.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit a27244147802: Modify tools contributed by Chungoo Park (cxp440@psu.edu) for Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots; add a new tool to 'Generate A Matrix for using PC and LDA'; remove redundant 'Principal Component Analysis' tool.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit 11fb3bb5b250: Fix bug so that users not logged in can view accessible/published visualizations.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit e56cc2ed6642: Add checks to get_estimated_display_viewport() methods for tabular data types to ensure datasets are valid before generating display links ( this fix should eliminate some memory problems ) and standardize the returned values from the methods. Also fix several calls to dataset.has_data where the call assumed a property rather than a method.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit 067e34574408: Fix bug so that fasta identifier produced by 'extract genomic dna' tool for GFF files is consistent with GFF coordinates.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit 4f157f2c6fd9: Bug fix for history/view when history has no user.
by commits-noreply@bitbucket.org
12 years, 4 months
galaxy-dist commit 0bb17e66a560: Added Sscrofa9.58 to manual_builds.txt and removed phiX from builds.txt.sample (it's in manual_builds.txt)
by commits-noreply@bitbucket.org
12 years, 4 months
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