galaxy-commits April 2015

galaxy-commits@lists.galaxyproject.org

2 participants
47 discussions

[galaxyproject/usegalaxy-playbook] e162ff: Updated Main to 15.05 rc1, enabled walltime resubm...
by GitHub 30 Apr '15

30 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e162ff44229afc5f01d49d74ef4bf793b32b4f1f https://github.com/galaxyproject/usegalaxy-playbook/commit/e162ff44229afc5f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-30 (Thu, 30 Apr 2015) Changed paths: M files/galaxy/usegalaxy.org/config/job_resource_params_conf.xml R files/galaxy/usegalaxy.org/dynamic_rules/local_stampede_select.py A files/galaxy/usegalaxy.org/dynamic_rules/multi_dynamic_walltime.py M production/group_vars/all.yml M production/group_vars/galaxyservers.yml M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Updated Main to 15.05 rc1, enabled walltime resubmission to Stampede.

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[galaxyproject/usegalaxy-playbook] 467a9c: Mutable configs on Test
by GitHub 29 Apr '15

29 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 467a9cc9728e806c28212e09f893fd2487be3406 https://github.com/galaxyproject/usegalaxy-playbook/commit/467a9cc9728e806c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-29 (Wed, 29 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_data_manager_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml Log Message: ----------- Mutable configs on Test Commit: c137320bcd555903d0849dd3ee76cf2ddb00aecb https://github.com/galaxyproject/usegalaxy-playbook/commit/c137320bcd555903… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-29 (Wed, 29 Apr 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test Commit: 09e42f45651eae8be6c7175ad3e652ed5d6b1d7b https://github.com/galaxyproject/usegalaxy-playbook/commit/09e42f45651eae8b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-29 (Wed, 29 Apr 2015) Changed paths: A files/galaxy/common/dynamic_rules/multi_dynamic_walltime.py A files/galaxy/common/dynamic_rules/reserved.py M files/galaxy/test.galaxyproject.org/config/job_resource_params_conf.xml M files/galaxy/test.galaxyproject.org/dynamic_rules/blacklight_select.py M files/galaxy/test.galaxyproject.org/dynamic_rules/multi_dynamic_walltime.py M files/galaxy/test.galaxyproject.org/dynamic_rules/nvc_dynamic_memory.py M files/galaxy/test.galaxyproject.org/dynamic_rules/reserved.py R files/galaxy/test.galaxyproject.org/dynamic_rules/stampede_select.py M files/galaxy/usegalaxy.org/dynamic_rules/reserved.py M stage/group_vars/galaxyservers.yml M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Combine the Stampede selector rule with the dynamic walltime rule, make Test's destinations and dynamic job rules match Main's. Changes for Main pending. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/d804047d9369...…

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[galaxyproject/usegalaxy-playbook] d80404: Test mutable configs
by GitHub 28 Apr '15

28 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d804047d9369e3703f09916eae9948cf6b7149f8 https://github.com/galaxyproject/usegalaxy-playbook/commit/d804047d9369e370… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-28 (Tue, 28 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml Log Message: ----------- Test mutable configs

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[galaxyproject/usegalaxy-playbook] 8e1145: Update Test
by GitHub 28 Apr '15

28 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 8e1145e622f3ba43800fbbac6586a770e294f812 https://github.com/galaxyproject/usegalaxy-playbook/commit/8e1145e622f3ba43… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-28 (Tue, 28 Apr 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test

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[galaxyproject/usegalaxy-playbook] 97ca21: Dropped Galaxy Japan Workshop slide; added GCC2015...
by GitHub 28 Apr '15

28 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 97ca219e7fc4a4a63985fbb7c6721b6acf68ebec https://github.com/galaxyproject/usegalaxy-playbook/commit/97ca219e7fc4a4a6… Author: tnabtaf <clements(a)galaxyproject.org> Date: 2015-04-28 (Tue, 28 Apr 2015) Changed paths: A files/galaxy/common/static/welcome_img/GCC2015EarlyReg.png M templates/galaxy/common/static/welcome.html.j2 Log Message: ----------- Dropped Galaxy Japan Workshop slide; added GCC2015 early registration slide

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[galaxyproject/usegalaxy-playbook] 1cc4ec: Updated Test mutable configs.
by GitHub 27 Apr '15

27 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1cc4ecc7caf9e0ac987e5ed4a2e944c03ca10a44 https://github.com/galaxyproject/usegalaxy-playbook/commit/1cc4ecc7caf9e0ac… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-27 (Mon, 27 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_data_manager_conf.xml Log Message: ----------- Updated Test mutable configs.

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[galaxyproject/usegalaxy-playbook] 1666f6: Update Test and Main, fetch/distribute mutable con...
by GitHub 27 Apr '15

27 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1666f64955a84eb2c89b49d96034a0b54606b641 https://github.com/galaxyproject/usegalaxy-playbook/commit/1666f64955a84eb2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-27 (Mon, 27 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml M production/group_vars/all.yml M stage/group_vars/all.yml Log Message: ----------- Update Test and Main, fetch/distribute mutable configs

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[galaxyproject/usegalaxy-playbook] 46a31d: PostgreSQL backups on radegast.
by GitHub 27 Apr '15

27 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 46a31dcb0479351687157613b68576d288968aad https://github.com/galaxyproject/usegalaxy-playbook/commit/46a31dcb04793516… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-27 (Mon, 27 Apr 2015) Changed paths: M common/host_vars/radegast.galaxyproject.org.yml M common/inventory M common_infrastructure.yml M toolshed_infrastructure.yml Log Message: ----------- PostgreSQL backups on radegast.

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[galaxyproject/usegalaxy-playbook] d66672: Decrease retry limits on Main Pulsar
by GitHub 27 Apr '15

27 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d666720c00fe31f08255015f032840d3519eb6bb https://github.com/galaxyproject/usegalaxy-playbook/commit/d666720c00fe31f0… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-27 (Mon, 27 Apr 2015) Changed paths: M production/host_vars/login5.stampede.tacc.utexas.edu.yml Log Message: ----------- Decrease retry limits on Main Pulsar Commit: 1da8ba669239f7c107f1aaad318979abae35eb92 https://github.com/galaxyproject/usegalaxy-playbook/commit/1da8ba669239f7c1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-27 (Mon, 27 Apr 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Do not attempt to contact Rodeo slurm controller. Also decrease concurrency limits to hopefully make a workshop tomorrow more responsive. Commit: e7e1bb705716d5f9fce238413a3186cade07ed70 https://github.com/galaxyproject/usegalaxy-playbook/commit/e7e1bb705716d5f9… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-27 (Mon, 27 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_data_manager_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml Log Message: ----------- Updated mutable configs from Test. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/49ce0d190edb...…

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[galaxyproject/usegalaxy-playbook] 49ce0d: A couple minor additions for the tool shed.
by GitHub 23 Apr '15

23 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 49ce0d190edb1f899adaec76b7df42a7d4a80fa5 https://github.com/galaxyproject/usegalaxy-playbook/commit/49ce0d190edb1f89… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-22 (Wed, 22 Apr 2015) Changed paths: M common/host_vars/radegast.galaxyproject.org.yml M production/group_vars/toolshedservers.yml Log Message: ----------- A couple minor additions for the tool shed.

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galaxy-commits April 2015