[galaxyproject/galaxy] 356d94: Allow pulsar jobs to be resubmitted on connection ...
by GitHub
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 356d949199359a974a96d531db0dc39d97007df6
https://github.com/galaxyproject/galaxy/commit/356d949199359a974a96d531db...
Author: Nuwan Goonasekera <2070605+nuwang(a)users.noreply.github.com>
Date: 2018-11-28 (Wed, 28 Nov 2018)
Changed paths:
M lib/galaxy/jobs/runners/pulsar.py
Log Message:
-----------
Allow pulsar jobs to be resubmitted on connection failures
Commit: 263d10ca1c7577f3138df83f19468c1c20b85ea0
https://github.com/galaxyproject/galaxy/commit/263d10ca1c7577f3138df83f19...
Author: Nuwan Goonasekera <2070605+nuwang(a)users.noreply.github.com>
Date: 2018-11-28 (Wed, 28 Nov 2018)
Changed paths:
A test/integration/resubmission_pulsar_job_conf.xml
M test/integration/test_job_resubmission.py
Log Message:
-----------
Added test for pulsar resubmission
Commit: 2632c071cdf1f6f49c30d243eea4931ee6fcaab2
https://github.com/galaxyproject/galaxy/commit/2632c071cdf1f6f49c30d243ee...
Author: Nuwan Goonasekera <2070605+nuwang(a)users.noreply.github.com>
Date: 2018-11-28 (Wed, 28 Nov 2018)
Changed paths:
M lib/galaxy/jobs/mapper.py
M test/unit/jobs/test_mapper.py
M test/unit/jobs/test_rules/10_site.py
Log Message:
-----------
Added referrer parameter for dynamic destinations + test
Commit: cd119d641ad59a9da008875b5c32f20127bcbd65
https://github.com/galaxyproject/galaxy/commit/cd119d641ad59a9da008875b5c...
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-12-21 (Fri, 21 Dec 2018)
Changed paths:
M client/README.md
M client/galaxy/scripts/app/singleton.js
M client/galaxy/scripts/apps/analysis.js
A client/galaxy/scripts/components/GalaxyLoader.vue
M client/galaxy/scripts/layout/menu.js
M client/galaxy/scripts/layout/panel.js
M client/galaxy/scripts/mvc/collection/collection-li.js
M client/galaxy/scripts/mvc/collection/collection-view.js
M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js
M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js
M client/galaxy/scripts/mvc/dataset/dataset-li.js
M client/galaxy/scripts/mvc/history/hdca-li.js
M client/galaxy/scripts/mvc/history/history-item-li.js
M client/galaxy/scripts/mvc/history/options-menu.js
M client/galaxy/scripts/mvc/list/list-item.js
M client/galaxy/scripts/mvc/list/list-view.js
M client/galaxy/scripts/mvc/tool/tool-form.js
M client/galaxy/scripts/mvc/ui/ui-frames.js
M client/galaxy/scripts/mvc/ui/ui-select-default.js
M client/galaxy/scripts/mvc/user/user-preferences.js
M client/galaxy/scripts/utils/utils.js
M client/package.json
M config/datatypes_conf.xml.sample
M config/galaxy.yml.sample
M config/job_conf.xml.sample_advanced
M config/job_resource_params_conf.xml.sample
M config/plugins/interactive_environments/neo/config/allowed_images.yml.sample
M config/plugins/interactive_environments/neo/config/neo.ini.sample
M config/tool_conf.xml.sample
M config/workflow_resource_params_conf.xml.sample
M config/workflow_schedulers_conf.xml.sample
M doc/source/admin/framework_dependencies.rst
M doc/source/admin/galaxy_options.rst
M doc/source/admin/jobs.md
M doc/source/admin/scaling.md
M lib/galaxy/app.py
M lib/galaxy/config.py
M lib/galaxy/datatypes/binary.py
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
M lib/galaxy/dependencies/pipfiles/update.sh
M lib/galaxy/exceptions/__init__.py
M lib/galaxy/exceptions/error_codes.json
M lib/galaxy/jobs/__init__.py
M lib/galaxy/jobs/handler.py
M lib/galaxy/jobs/manager.py
M lib/galaxy/jobs/runners/__init__.py
M lib/galaxy/jobs/runners/drmaa.py
M lib/galaxy/jobs/runners/pulsar.py
M lib/galaxy/managers/configuration.py
M lib/galaxy/managers/datasets.py
M lib/galaxy/managers/workflows.py
M lib/galaxy/model/__init__.py
M lib/galaxy/model/mapping.py
M lib/galaxy/model/migrate/versions/0145_add_workflow_step_input.py
A lib/galaxy/model/migrate/versions/0146_workflow_paths.py
M lib/galaxy/objectstore/__init__.py
M lib/galaxy/objectstore/azure_blob.py
M lib/galaxy/objectstore/cloud.py
M lib/galaxy/objectstore/pithos.py
M lib/galaxy/objectstore/s3.py
M lib/galaxy/tools/__init__.py
M lib/galaxy/tools/actions/__init__.py
M lib/galaxy/tools/actions/history_imp_exp.py
M lib/galaxy/tools/actions/metadata.py
M lib/galaxy/tools/actions/upload_common.py
M lib/galaxy/tools/deps/singularity_util.py
M lib/galaxy/tools/filter_from_file.xml
M lib/galaxy/tools/parameters/meta.py
M lib/galaxy/tools/parameters/output_collect.py
M lib/galaxy/tools/parameters/validation.py
M lib/galaxy/tools/verify/__init__.py
M lib/galaxy/tools/xsd/galaxy.xsd
M lib/galaxy/util/__init__.py
M lib/galaxy/util/facts.py
M lib/galaxy/util/handlers.py
M lib/galaxy/visualization/plugins/interactive_environments.py
M lib/galaxy/web/base/controller.py
M lib/galaxy/web/stack/__init__.py
M lib/galaxy/web/stack/transport.py
M lib/galaxy/webapps/galaxy/api/cloud.py
M lib/galaxy/webapps/galaxy/api/jobs.py
M lib/galaxy/webapps/galaxy/api/workflows.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/galaxy/controllers/admin.py
M lib/galaxy/webapps/galaxy/controllers/dataset.py
M lib/galaxy/webapps/galaxy/controllers/history.py
M lib/galaxy/workflow/scheduling_manager.py
M lib/galaxy_ext/metadata/set_metadata.py
M scripts/common_startup.sh
M scripts/common_startup_functions.sh
M scripts/grt/export.py
M scripts/grt/grt.yml.sample
M templates/admin/tool_shed_repository/manage_repository.mako
M test/api/test_workflows.py
M test/base/populators.py
M test/base/workflow_fixtures.py
M test/functional/tools/for_workflows/head.xml
M test/functional/tools/samples_tool_conf.xml
A test/functional/tools/tool_provided_metadata_10.xml
A test/functional/tools/tool_provided_metadata_11.xml
A test/functional/tools/tool_provided_metadata_12.xml
M test/integration/test_dockerized_jobs.py
A test/integration/test_workflow_sync.py
A test/unit/jobs/handler_template_job_conf.xml
M test/unit/jobs/test_job_configuration.py
M test/unit/jobs/test_job_wrapper.py
M test/unit/jobs/test_runner_local.py
M test/unit/test_objectstore.py
M test/unit/tools/test_actions.py
M test/unit/tools/test_parameter_parsing.py
M test/unit/tools/test_toolbox.py
M test/unit/tools/test_wrappers.py
M test/unit/unittest_utils/galaxy_mock.py
R tools/data_source/bed_convert.xml
M tools/data_source/genbank.xml
M tools/data_source/upload.xml
M tools/extract/liftOver_wrapper.xml
M tools/filters/CreateInterval.xml
M tools/filters/bed_to_bigbed.xml
M tools/filters/changeCase.xml
M tools/filters/fileGrep.xml
M tools/filters/fixedValueColumn.xml
M tools/filters/gff/gff_filter_by_attribute.xml
M tools/filters/gff/gff_filter_by_feature_count.xml
M tools/filters/grep.xml
M tools/filters/headWrapper.xml
M tools/filters/randomlines.xml
M tools/filters/remove_beginning.xml
M tools/filters/tailWrapper.xml
M tools/filters/wig_to_bigwig.xml
M tools/maf/vcf_to_maf_customtrack.xml
M tools/metag_tools/blat_wrapper.xml
M tools/metag_tools/shrimp_color_wrapper.xml
M tools/metag_tools/shrimp_wrapper.xml
M tools/plotting/bar_chart.xml
M tools/plotting/boxplot.xml
M tools/solid_tools/maq_cs_wrapper.xml
M tools/sr_mapping/PerM.xml
M tools/sr_mapping/bfast_wrapper.xml
M tools/stats/filtering.xml
M tools/stats/grouping.py
M tools/stats/grouping.xml
M tools/stats/gsummary.xml
M tools/stats/gsummary.xml.groups
Log Message:
-----------
Merge remote-tracking branch 'jmchilton/dev' into pulsar_resubmit
Commit: 0727f17ade3bb964a260907860a7ab0aee39a4b3
https://github.com/galaxyproject/galaxy/commit/0727f17ade3bb964a260907860...
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-12-21 (Fri, 21 Dec 2018)
Changed paths:
M lib/galaxy/jobs/runners/pulsar.py
M test/integration/resubmission_pulsar_job_conf.xml
Log Message:
-----------
Fixes for Pulsar error handling.
More uniform error hanlding to fix test. Simplify test case of resubmission to test just jobs resubmit properly (no need to test Pulsar-to-Pulsar resubmission in particular here I don't think, maybe as a second test - but not a first?).
Commit: abf98be7833f1df15ad292b453f5b79899e8412f
https://github.com/galaxyproject/galaxy/commit/abf98be7833f1df15ad292b453...
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-12-21 (Fri, 21 Dec 2018)
Changed paths:
M lib/galaxy/jobs/runners/pulsar.py
Log Message:
-----------
lint fix
Commit: 26c950f569111ccd61621849c0fc7aecbf70e76b
https://github.com/galaxyproject/galaxy/commit/26c950f569111ccd61621849c0...
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-12-21 (Fri, 21 Dec 2018)
Changed paths:
M lib/galaxy/jobs/mapper.py
M lib/galaxy/jobs/runners/pulsar.py
A test/integration/resubmission_pulsar_job_conf.xml
M test/integration/test_job_resubmission.py
M test/unit/jobs/test_mapper.py
M test/unit/jobs/test_rules/10_site.py
Log Message:
-----------
Merge pull request #7053 from nuwang/pulsar_resubmit
Added resubmit handlers on Pulsar connection failures
Compare: https://github.com/galaxyproject/galaxy/compare/e4e2d9c09a45...26c950f56911
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
4 years, 1 month
[galaxyproject/galaxy] 1c82d0: adds Aequatus visualisation plugin
by GitHub
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 1c82d08ab5c216ad568ec1d51d3398ffb0214c18
https://github.com/galaxyproject/galaxy/commit/1c82d08ab5c216ad568ec1d51d...
Author: anilthanki <thanki.anil(a)gmail.com>
Date: 2018-12-20 (Thu, 20 Dec 2018)
Changed paths:
A config/plugins/visualizations/aequatus/README.md
A config/plugins/visualizations/aequatus/config/aequatus.xml
A config/plugins/visualizations/aequatus/static/aequatus-vis/LICENSE
A config/plugins/visualizations/aequatus/static/aequatus-vis/README.md
A config/plugins/visualizations/aequatus/static/aequatus-vis/_config.yml
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/cigarUtils.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/d3_tree.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/drawCIGARs.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/drawGene.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/drawGeneExonOnly.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/geneView.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/init.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/jquery-ui-1.12.1.min.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/jquery.svg.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery-3.3.1.min.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery-migrate-1.4.1.min.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery-ui-1.12.1.min.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery.cookie.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery.svg.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/newick.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/scriptaculous/prototype.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/util.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/css/fontawesome.min.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/css/solid.min.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/FontAwesome.otf
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.eot
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.svg
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.ttf
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.woff
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.woff2
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.eot
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.svg
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.ttf
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.woff
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/style.css
A config/plugins/visualizations/aequatus/static/scripts/controls.js
A config/plugins/visualizations/aequatus/static/scripts/popup.js
A config/plugins/visualizations/aequatus/static/scripts/readSQLite.js
A config/plugins/visualizations/aequatus/static/scripts/sql.js
A config/plugins/visualizations/aequatus/static/scripts/worker.js
A config/plugins/visualizations/aequatus/static/scripts/worker.sql.js
A config/plugins/visualizations/aequatus/static/styles/aequatus.css
A config/plugins/visualizations/aequatus/templates/aequatus.mako
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
adds Aequatus visualisation plugin
updates Aequatus control panel-settings font size
Update README.md
fix path to aequatus static scripts
updates with upstream
removes console
removes installation guide
removes demo
removes duplicates
removes d3.js
removes bootstrap
prunes font-awesome
removes less of font-awesome
removes scss of font-awesome
uses font-swesome min
removes bootstrap
removes leftandright css class
updates jQuery and changes css class for popup
updates jQuery
updates fontawesome to 5.6.1
restore galaxy.yml.sample
add missing resource
update paths after updating font
remove console log
switch to minified jquery ui
Commit: e4e2d9c09a45375faeb3e52d16beac87d4df1f99
https://github.com/galaxyproject/galaxy/commit/e4e2d9c09a45375faeb3e52d16...
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-12-21 (Fri, 21 Dec 2018)
Changed paths:
A config/plugins/visualizations/aequatus/README.md
A config/plugins/visualizations/aequatus/config/aequatus.xml
A config/plugins/visualizations/aequatus/static/aequatus-vis/LICENSE
A config/plugins/visualizations/aequatus/static/aequatus-vis/README.md
A config/plugins/visualizations/aequatus/static/aequatus-vis/_config.yml
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/cigarUtils.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/d3_tree.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/drawCIGARs.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/drawGene.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/drawGeneExonOnly.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/geneView.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/init.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/jquery-ui-1.12.1.min.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/jquery.svg.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery-3.3.1.min.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery-migrate-1.4.1.min.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery-ui-1.12.1.min.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery.cookie.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/jquery/js/jquery.svg.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/newick.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/scriptaculous/prototype.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/scripts/util.js
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/css/fontawesome.min.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/css/solid.min.css
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/FontAwesome.otf
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.eot
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.svg
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.ttf
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.woff
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fa-solid-900.woff2
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.eot
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.svg
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.ttf
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/font-awesome-5.6.1/webfonts/fontawesome-webfont.woff
A config/plugins/visualizations/aequatus/static/aequatus-vis/styles/style.css
A config/plugins/visualizations/aequatus/static/scripts/controls.js
A config/plugins/visualizations/aequatus/static/scripts/popup.js
A config/plugins/visualizations/aequatus/static/scripts/readSQLite.js
A config/plugins/visualizations/aequatus/static/scripts/sql.js
A config/plugins/visualizations/aequatus/static/scripts/worker.js
A config/plugins/visualizations/aequatus/static/scripts/worker.sql.js
A config/plugins/visualizations/aequatus/static/styles/aequatus.css
A config/plugins/visualizations/aequatus/templates/aequatus.mako
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Merge pull request #6484 from anilthanki/aequatus-vis
Adds Aequatus visualisation plugin
Compare: https://github.com/galaxyproject/galaxy/compare/e8d95fba71a4...e4e2d9c09a45
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
4 years, 1 month
[galaxyproject/galaxy] de3b7b: Add display applications api endpoint
by GitHub
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: de3b7bb55fd4949456bfb61637cb67b1fd367d6e
https://github.com/galaxyproject/galaxy/commit/de3b7bb55fd4949456bfb61637...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
A lib/galaxy/webapps/galaxy/api/display_applications.py
M lib/galaxy/webapps/galaxy/buildapp.py
Log Message:
-----------
Add display applications api endpoint
Commit: 6546e35bff27a60b09bf30ca68c2beb62a61acd4
https://github.com/galaxyproject/galaxy/commit/6546e35bff27a60b09bf30ca68...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/display_applications.py
M lib/galaxy/webapps/galaxy/buildapp.py
Log Message:
-----------
Add reload feature to display applications api endpoint
Commit: eb0c0ad9ab204cee83233523c01b11aa040a6388
https://github.com/galaxyproject/galaxy/commit/eb0c0ad9ab204cee83233523c0...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M client/galaxy/scripts/apps/admin.js
A client/galaxy/scripts/components/admin/DisplayApplications.vue
M lib/galaxy/webapps/galaxy/api/display_applications.py
M lib/galaxy/webapps/galaxy/buildapp.py
M lib/galaxy/webapps/galaxy/controllers/admin.py
Log Message:
-----------
Add display application vue component
Commit: 727ab11480962ec31387cc6934c0fcec14a4ead0
https://github.com/galaxyproject/galaxy/commit/727ab11480962ec31387cc6934...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
Log Message:
-----------
Fix spacing in admin app router
Commit: 35d2cd9bf62a748bc3dd5963a3246b5a5a7e2a18
https://github.com/galaxyproject/galaxy/commit/35d2cd9bf62a748bc3dd5963a3...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M client/galaxy/scripts/apps/admin.js
M client/galaxy/scripts/components/admin/DisplayApplications.vue
Log Message:
-----------
Load display application data and display number of available applications
Commit: 505e4288eebabf4ff3a317a90785cc6906941e53
https://github.com/galaxyproject/galaxy/commit/505e4288eebabf4ff3a317a907...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
Log Message:
-----------
Add display application vue component
Commit: 218a02f3dccd8ccb5c6aa3df6c81764cb5e7a793
https://github.com/galaxyproject/galaxy/commit/218a02f3dccd8ccb5c6aa3df6c...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/admin.py
R templates/webapps/galaxy/admin/view_display_applications.mako
Log Message:
-----------
Remove legacy display applications mako and controller endpoints
Commit: 4b097acffe77ab8348b4497cc9032011e2469825
https://github.com/galaxyproject/galaxy/commit/4b097acffe77ab8348b4497cc9...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
M lib/galaxy/webapps/galaxy/api/display_applications.py
Log Message:
-----------
Submit reload requests to new display application api endpoint
Commit: b3f4d9b699e7a137dce7d130fe629aa01fc81292
https://github.com/galaxyproject/galaxy/commit/b3f4d9b699e7a137dce7d130fe...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/display_applications.py
Log Message:
-----------
Remove debug outputs
Commit: e8739a6cf530426bcd6f8c1c3964d7c31fb2a487
https://github.com/galaxyproject/galaxy/commit/e8739a6cf530426bcd6f8c1c39...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
Log Message:
-----------
Use bootstrap vues table component to render display applications table
Commit: 39870a0d06647cf378ceae8b99065fbb09a8eefb
https://github.com/galaxyproject/galaxy/commit/39870a0d06647cf378ceae8b99...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
M lib/galaxy/webapps/galaxy/api/display_applications.py
Log Message:
-----------
Highlight reloaded/failed display application rows individually
Commit: f68fa47f295f3d743d7de97521fcf97f78cf0248
https://github.com/galaxyproject/galaxy/commit/f68fa47f295f3d743d7de97521...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/display_applications.py
Log Message:
-----------
Fix linting
Commit: 06deee06a48ae263a8ad396aac210ff9093ad6c6
https://github.com/galaxyproject/galaxy/commit/06deee06a48ae263a8ad396aac...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-12 (Wed, 12 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
M test/selenium_tests/test_admin_app.py
Log Message:
-----------
Fix selenium test case for display application visibility
Commit: 5b677cfd52e35e4b325dcd7fe426446c9c695262
https://github.com/galaxyproject/galaxy/commit/5b677cfd52e35e4b325dcd7fe4...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
M test/selenium_tests/test_admin_app.py
Log Message:
-----------
Fix selenium test, add missing applications message
Commit: e3ef379674784f766d94c8e126f3744af4f5c9a7
https://github.com/galaxyproject/galaxy/commit/e3ef379674784f766d94c8e126...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
Log Message:
-----------
Show warning message after requesting display applications
Commit: f5a3ab464743a0d47672c00ce611520d846d6241
https://github.com/galaxyproject/galaxy/commit/f5a3ab464743a0d47672c00ce6...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
Changed paths:
A client/galaxy/scripts/components/admin/AdminServices.js
M client/galaxy/scripts/components/admin/DisplayApplications.vue
Log Message:
-----------
Separate api requests from vue component for admin services
Commit: 255418d158fd0d4a77bd9e56f18c15ec56bac02d
https://github.com/galaxyproject/galaxy/commit/255418d158fd0d4a77bd9e56f1...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/buildapp.py
Log Message:
-----------
Fix comment header for display applications api
Commit: f5b7553fea0f08c1bb37ce43172b91feed15bb44
https://github.com/galaxyproject/galaxy/commit/f5b7553fea0f08c1bb37ce4317...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-17 (Mon, 17 Dec 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/display_applications.py
Log Message:
-----------
Add require admin to display applications api
Commit: a00d013fd14ecc1eca59b8d572c1ec5a673bce74
https://github.com/galaxyproject/galaxy/commit/a00d013fd14ecc1eca59b8d572...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-18 (Tue, 18 Dec 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/display_applications.py
Log Message:
-----------
Remove admin requirment from index endpoint of display applications
Commit: e237bcfd16d6a72e78afe1405e4eaeb05a91af20
https://github.com/galaxyproject/galaxy/commit/e237bcfd16d6a72e78afe1405e...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
Log Message:
-----------
Use b-alert instead of basic bootstrap alert messages
Commit: 558aca71d69ea81746013489be52ee5813ecc43c
https://github.com/galaxyproject/galaxy/commit/558aca71d69ea81746013489be...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M client/galaxy/scripts/components/admin/DisplayApplications.vue
Log Message:
-----------
Replace default links with bootstrap vue buttons
Commit: 3c2858ab0c9d79de18e28abfcef89de789e2c70c
https://github.com/galaxyproject/galaxy/commit/3c2858ab0c9d79de18e28abfce...
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-12-21 (Fri, 21 Dec 2018)
Changed paths:
M client/galaxy/scripts/apps/admin.js
M client/galaxy/scripts/apps/panels/admin-panel.js
A client/galaxy/scripts/components/admin/AdminServices.js
A client/galaxy/scripts/components/admin/DisplayApplications.vue
A lib/galaxy/webapps/galaxy/api/display_applications.py
M lib/galaxy/webapps/galaxy/buildapp.py
M lib/galaxy/webapps/galaxy/controllers/admin.py
R templates/webapps/galaxy/admin/view_display_applications.mako
M test/selenium_tests/test_admin_app.py
Log Message:
-----------
Merge pull request #7097 from guerler/display_applications
Replace display applications mako with vue component
Compare: https://github.com/galaxyproject/galaxy/compare/38687ff15a09...3c2858ab0c9d
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