Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 326477d957bda9c32f63497b5fc911e8c2a9731d
https://github.com/galaxyproject/galaxy/commit/326477d957bda9c32f63497b5fc9…
Author: E Rasche <hxr(a)hx42.org>
Date: 2017-08-31 (Thu, 31 Aug 2017)
Changed paths:
M config/error_report.yml.sample
M doc/source/admin/special_topics/bug_reports.rst
A lib/galaxy/tools/error_reports/plugins/influxdb.py
Log Message:
-----------
implement influxdb error reporter
Commit: f67fa22dd9bd05d72df859065a3e126af0161d62
https://github.com/galaxyproject/galaxy/commit/f67fa22dd9bd05d72df859065a3e…
Author: E Rasche <hxr(a)hx42.org>
Date: 2017-08-31 (Thu, 31 Aug 2017)
Changed paths:
M lib/galaxy/tools/error_reports/plugins/influxdb.py
M lib/galaxy/tools/error_reports/plugins/json.py
M lib/galaxy/tools/error_reports/plugins/sentry.py
Log Message:
-----------
also add destination id everywhere
Commit: 7db1a3fb3e6f61540f1354a899fce1c55e834775
https://github.com/galaxyproject/galaxy/commit/7db1a3fb3e6f61540f1354a899fc…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-08-31 (Thu, 31 Aug 2017)
Changed paths:
M config/error_report.yml.sample
M doc/source/admin/special_topics/bug_reports.rst
A lib/galaxy/tools/error_reports/plugins/influxdb.py
M lib/galaxy/tools/error_reports/plugins/json.py
M lib/galaxy/tools/error_reports/plugins/sentry.py
Log Message:
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Merge pull request #4533 from erasche/influxdb-error-reporter
Implement influxdb error reporter
Compare: https://github.com/galaxyproject/galaxy/compare/49f243862207...7db1a3fb3e6f
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: b75f793ea4c58786747da3a9571ba3bd938cd181
https://github.com/galaxyproject/galaxy/commit/b75f793ea4c58786747da3a9571b…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-08-29 (Tue, 29 Aug 2017)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-terminals.js
M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js
M lib/galaxy/tools/__init__.py
M lib/galaxy/workflow/modules.py
Log Message:
-----------
Load tools with collection type source attributes into the workflow editor.
Should allow using filter failed and merge collection tools within workflows.
Commit: ba8a7f0e3a540c99b3d8e7be3ea67008e2e76ff2
https://github.com/galaxyproject/galaxy/commit/ba8a7f0e3a540c99b3d8e7be3ea6…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-08-29 (Tue, 29 Aug 2017)
Changed paths:
M static/maps/mvc/workflow/workflow-terminals.js.map
M static/maps/mvc/workflow/workflow-view-terminals.js.map
M static/scripts/bundled/admin.bundled.js.map
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js.map
M static/scripts/mvc/workflow/workflow-terminals.js
M static/scripts/mvc/workflow/workflow-view-terminals.js
Log Message:
-----------
Pack client.
Commit: 01d16358efa5a71f7030c48c302129cca515e6c6
https://github.com/galaxyproject/galaxy/commit/01d16358efa5a71f7030c48c3021…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-08-31 (Thu, 31 Aug 2017)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-terminals.js
M static/maps/mvc/workflow/workflow-terminals.js.map
Log Message:
-----------
Adjust JS styling for workflow-terminal.js.
Commit: 49f2438622075f3e9cbe9097ad31b177c97f532a
https://github.com/galaxyproject/galaxy/commit/49f2438622075f3e9cbe9097ad31…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2017-08-31 (Thu, 31 Aug 2017)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-terminals.js
M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js
M lib/galaxy/tools/__init__.py
M lib/galaxy/workflow/modules.py
M static/maps/mvc/workflow/workflow-terminals.js.map
M static/maps/mvc/workflow/workflow-view-terminals.js.map
M static/scripts/bundled/admin.bundled.js.map
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js.map
M static/scripts/mvc/workflow/workflow-terminals.js
M static/scripts/mvc/workflow/workflow-view-terminals.js
Log Message:
-----------
Merge pull request #4514 from jmchilton/collection_operations
Load tools with collection type source attributes into the workflow editor
Compare: https://github.com/galaxyproject/galaxy/compare/d09ced249d72...49f243862207
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 43fd81df59c1862c745813e3b340e93976ef1e2b
https://github.com/galaxyproject/galaxy/commit/43fd81df59c1862c745813e3b340…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-08-30 (Wed, 30 Aug 2017)
Changed paths:
M test/galaxy_selenium/driver_factory.py
M test/selenium_tests/framework.py
Log Message:
-----------
More logging for selenium tests.
Dumb the browser log and the driver log out as JSON to the test error directory for that test.
Commit: f35fed29356d1f55af803f2f24cd2e54634cc8a6
https://github.com/galaxyproject/galaxy/commit/f35fed29356d1f55af803f2f24cd…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-08-30 (Wed, 30 Aug 2017)
Changed paths:
M test/galaxy_selenium/sizzle.py
A test/selenium_tests/test_sizzle_loading.py
Log Message:
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Improve setting up Sizzle for Selenium tests.
Something releated to AMD broke our way of injecting Sizzle into Galaxy for Selenium tests. This is a much better way that seems to work - just use jQuery ($) as Sizzle if it is available. Avoids an external dependency and another page fetch per test as well as fixing the problem.
Add a test case that just tests the sizzle stuff works on its own. It will be a clear indiciation what is broken if there are related regressions in the future.
Commit: d09ced249d729b5c0a2098a9d5e81472c91f62b6
https://github.com/galaxyproject/galaxy/commit/d09ced249d729b5c0a2098a9d5e8…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2017-08-31 (Thu, 31 Aug 2017)
Changed paths:
M test/galaxy_selenium/driver_factory.py
M test/galaxy_selenium/sizzle.py
M test/selenium_tests/framework.py
A test/selenium_tests/test_sizzle_loading.py
Log Message:
-----------
Merge pull request #4523 from jmchilton/selenium_fixes_15
Selenium test fixes and improvements.
Compare: https://github.com/galaxyproject/galaxy/compare/823eb1d4ec84...d09ced249d72
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 5ab28634cabc1df2aa14e9db303247e41b9ea311
https://github.com/galaxyproject/galaxy/commit/5ab28634cabc1df2aa14e9db3032…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-08-29 (Tue, 29 Aug 2017)
Changed paths:
M test/api/test_jobs.py
Log Message:
-----------
Prevent transient job state test failures from failing the build.
A precondition to the real meat of the test is failing to be met sometimes in production - this failure is indicating a problem with the test and not with Galaxy. I previously tried to address this with https://github.com/galaxyproject/galaxy/pull/3988 but that didn't work. Now if the trainsient ok occurs the test will be skipped. Most of the time it won't skip and the rest of the test will execute and ensure there aren't regressions in behaviors related to cleaning up datasets after job completion. I'm placing the skips a couple different places so hopefully we can get a stack trace at somepoint - knowing where the code is when the job state is changing from running to ok will help puzzle out what is handing for the two minutes the job is running in the test framework.
Commit: 2f9cd0ee491cc99af4a64416e21ce95e6e7dbb33
https://github.com/galaxyproject/galaxy/commit/2f9cd0ee491cc99af4a64416e21c…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-08-30 (Wed, 30 Aug 2017)
Changed paths:
M test/api/test_jobs.py
Log Message:
-----------
Merge pull request #4510 from jmchilton/job_test_fix
Prevent transient job state test failures from failing the build.
Compare: https://github.com/galaxyproject/galaxy/compare/f3b8a121b7d9...2f9cd0ee491c
Branch: refs/heads/master
Home: https://github.com/galaxyproject/usegalaxy-playbook
Commit: c565b0e7b893ee4a455cc6889e5c9d6578422c0d
https://github.com/galaxyproject/usegalaxy-playbook/commit/c565b0e7b893ee4a…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-08-29 (Tue, 29 Aug 2017)
Changed paths:
M roles/galaxyproject.proftpd/README.md
M roles/galaxyproject.proftpd/defaults/main.yml
M roles/galaxyproject.proftpd/handlers/main.yml
A roles/galaxyproject.proftpd/meta/.galaxy_install_info
M roles/galaxyproject.proftpd/tasks/debian.yml
M roles/galaxyproject.proftpd/tasks/galaxy_auth.yml
M roles/galaxyproject.proftpd/tasks/main.yml
M roles/galaxyproject.proftpd/tasks/redhat.yml
M roles/galaxyproject.proftpd/tasks/tls.yml
M roles/galaxyproject.proftpd/templates/galaxy_auth.conf.j2
A roles/galaxyproject.proftpd/templates/global.conf.j2
M roles/galaxyproject.proftpd/templates/tls.conf.j2
A roles/galaxyproject.proftpd/templates/virtualhost.conf.j2
M roles/galaxyproject.proftpd/tests/test.yml
M roles/galaxyproject.proftpd/vars/main.yml
Log Message:
-----------
Upgrade galaxyproject.proftpd
Commit: d4ea9ac0c2171835d9228955d68a84777040c19b
https://github.com/galaxyproject/usegalaxy-playbook/commit/d4ea9ac0c2171835…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-08-29 (Tue, 29 Aug 2017)
Changed paths:
M env/common/stack.yml
M env/test/group_vars/dbservers/vault.yml
R env/test/group_vars/ftpservers.yml
A env/test/group_vars/ftpservers/vars.yml
A env/test/group_vars/ftpservers/vault.yml
Log Message:
-----------
Enable implicit FTPS on Test
Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/234608edacbe...…