galaxy-commits October 2016

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[galaxyproject/galaxy] b31bd5: Extend PUT /api/workflows/{id} with additional wor...
by GitHub 31 Oct '16

31 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b31bd5be35b207ce3be3c287c5fa7831a40986d7 https://github.com/galaxyproject/galaxy/commit/b31bd5be35b207ce3be3c287c5fa… Author: tmcgowan <mcgo0092(a)umn.edu> Date: 2016-10-21 (Fri, 21 Oct 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Extend PUT /api/workflows/{id} with additional workflow properties Commit: aaf5b4d0f8a823d9b3d659b55f25ce207c47e25e https://github.com/galaxyproject/galaxy/commit/aaf5b4d0f8a823d9b3d659b55f25… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-10-31 (Mon, 31 Oct 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Merge pull request #3080 from tmcgowan/frequest_1842 Extend PUT /api/workflows/{id} with additional workflow properties Compare: https://github.com/galaxyproject/galaxy/compare/9e1331f1b37a...aaf5b4d0f8a8

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[galaxyproject/galaxy] b9e4bf: Sort bedtools output in bam_to_bigwig conversion
by GitHub 31 Oct '16

31 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b9e4bf58c5b656089ac8402632677503e6a86c65 https://github.com/galaxyproject/galaxy/commit/b9e4bf58c5b656089ac840263267… Author: Lance Parsons <lparsons(a)princeton.edu> Date: 2016-10-13 (Thu, 13 Oct 2016) Changed paths: M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml Log Message: ----------- Sort bedtools output in bam_to_bigwig conversion Bedtools genomecov seems to output bedgraph files with chromosomes sorted in the order given in the chromInfo file. This can cause issues with bedGraphToBigWig which requires them sorted in a specific way. Fixes #2582. Commit: 9e1331f1b37a40d8894fc724bb745589bc5e213b https://github.com/galaxyproject/galaxy/commit/9e1331f1b37a40d8894fc724bb74… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-10-31 (Mon, 31 Oct 2016) Changed paths: M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml Log Message: ----------- Merge pull request #3049 from lparsons/bam_to_bigwig Sort bedtools output in bam_to_bigwig conversion Compare: https://github.com/galaxyproject/galaxy/compare/25527bec32b2...9e1331f1b37a

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[galaxyproject/galaxy] d9dfc2: Move thumbnail list view to shared ui elements
by GitHub 31 Oct '16

31 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d9dfc2cc78339f9b2158a07fff3df0a24d081865 https://github.com/galaxyproject/galaxy/commit/d9dfc2cc78339f9b2158a07fff3d… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: A client/galaxy/scripts/mvc/ui/ui-thumbnails.js M client/galaxy/style/less/ui.less M config/plugins/visualizations/charts/static/client/app.css M config/plugins/visualizations/charts/static/client/views/editor.js R config/plugins/visualizations/charts/static/client/views/types.js A static/maps/mvc/ui/ui-thumbnails.js.map A static/scripts/mvc/ui/ui-thumbnails.js M static/style/blue/base.css Log Message: ----------- Move thumbnail list view to shared ui elements Commit: 296ef7e232468a2311ba18763752d97e10c63a2d https://github.com/galaxyproject/galaxy/commit/296ef7e232468a2311ba18763752… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-tabs.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js M static/maps/mvc/ui/ui-tabs.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-tabs.js Log Message: ----------- Hide tabs navigation if there is only one tab Commit: aab59be19160a97f41c60b7dab741825c90be934 https://github.com/galaxyproject/galaxy/commit/aab59be19160a97f41c60b7dab74… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/style/less/ui.less M static/style/blue/base.css Log Message: ----------- Fix margin Commit: ec9ca3ffd1bcb2a6e70a5a1f2c8e0183e80ddc1a https://github.com/galaxyproject/galaxy/commit/ec9ca3ffd1bcb2a6e70a5a1f2c8e… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-thumbnails.js M config/plugins/visualizations/charts/static/client/views/editor.js M static/maps/mvc/ui/ui-thumbnails.js.map M static/scripts/mvc/ui/ui-thumbnails.js Log Message: ----------- Fix list view title Commit: 0b1c171ebc2b9b0605a6ef1e8e5b68e20d579c74 https://github.com/galaxyproject/galaxy/commit/0b1c171ebc2b9b0605a6ef1e8e5b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-tabs.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js M config/plugins/visualizations/charts/static/client/views/editor.js M static/maps/mvc/ui/ui-tabs.js.map M static/maps/mvc/ui/ui-thumbnails.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js M test/qunit/tests/ui_tests.js Log Message: ----------- Revise tab viewer, add test cases Commit: c4526bdaba29ccc9b045dea429dbc0c3fa0e5b15 https://github.com/galaxyproject/galaxy/commit/c4526bdaba29ccc9b045dea429db… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-tabs.js M static/maps/mvc/ui/ui-tabs.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-tabs.js Log Message: ----------- Hide tab navbar if there is only one tab available Commit: 25527bec32b2431f1a8769ef79f34ad9af38c0db https://github.com/galaxyproject/galaxy/commit/25527bec32b2431f1a8769ef79f3… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-10-31 (Mon, 31 Oct 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-tabs.js A client/galaxy/scripts/mvc/ui/ui-thumbnails.js M client/galaxy/style/less/ui.less M config/plugins/visualizations/charts/static/client/app.css M config/plugins/visualizations/charts/static/client/views/editor.js R config/plugins/visualizations/charts/static/client/views/types.js M static/maps/mvc/ui/ui-tabs.js.map A static/maps/mvc/ui/ui-thumbnails.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-tabs.js A static/scripts/mvc/ui/ui-thumbnails.js M static/style/blue/base.css M test/qunit/tests/ui_tests.js Log Message: ----------- Merge pull request #3079 from guerler/reusable_grid_view Move thumbnail list view to shared ui elements, revise tabs, add test cases Compare: https://github.com/galaxyproject/galaxy/compare/f9ee0f86376f...25527bec32b2

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[galaxyproject/galaxy] 4bfac4: Fix flake8 errors and Python3 compatibility for do...
by GitHub 31 Oct '16

31 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4bfac4536971c54a704c76de083de0600332442c https://github.com/galaxyproject/galaxy/commit/4bfac4536971c54a704c76de083d… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-10-24 (Mon, 24 Oct 2016) Changed paths: M .ci/flake8_blacklist.txt M .ci/flake8_lint_include_list.txt M .ci/py3_sources.txt M doc/patch.py Log Message: ----------- Fix flake8 errors and Python3 compatibility for doc/patch.py Commit: a21ed34efb695fb71f1c7616dc1655de8b54be41 https://github.com/galaxyproject/galaxy/commit/a21ed34efb695fb71f1c7616dc16… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-10-24 (Mon, 24 Oct 2016) Changed paths: R doc/source/admin/interactive_environments_success.png A doc/source/dev/interactive_environments_success.png Log Message: ----------- Move png in the right directory Broken in #2543. Commit: 8a17143bc77ce370974e35f51d699f8029edd647 https://github.com/galaxyproject/galaxy/commit/8a17143bc77ce370974e35f51d69… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-10-24 (Mon, 24 Oct 2016) Changed paths: R doc/source/lib/galaxy.util.backports.importlib.rst R scripts/bootstrap_history_announce_template.rst Log Message: ----------- Remove unused files Commit: e6d0b69ec89786f56fa71d2e893b2361bbe55d0e https://github.com/galaxyproject/galaxy/commit/e6d0b69ec89786f56fa71d2e893b… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-10-24 (Mon, 24 Oct 2016) Changed paths: M doc/source/dev/build_a_job_runner.rst A doc/source/dev/inherit.png A doc/source/dev/queue.png A doc/source/dev/queue_b.png A doc/source/dev/runner_diag.png Log Message: ----------- Add and use local images for build runner doc Commit: 3180b631662ced589fe9db42d27caa58638b5f8d https://github.com/galaxyproject/galaxy/commit/3180b631662ced589fe9db42d27c… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-10-24 (Mon, 24 Oct 2016) Changed paths: M .gitignore M Makefile M doc/Makefile M doc/parse_gx_xsd.py M doc/schema_template.md M doc/source/dev/index.rst M lib/galaxy/tools/xsd/galaxy.xsd Log Message: ----------- Properly integrate tool XML schema with docs Generate intermediate rst file instead of html Move generation to doc/Makefile Use pandoc to generate table of contents and fragment ids. Remove nested inline markup (not supported by reStructuredText) Fix https and other links. Commit: 527e332aa39e82224965e6aaef94ffaa1cf956bf https://github.com/galaxyproject/galaxy/commit/527e332aa39e82224965e6aaef94… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-10-24 (Mon, 24 Oct 2016) Changed paths: M doc/source/admin/conda_faq.rst M doc/source/admin/interactive_environments.rst M doc/source/admin/mulled_containers.rst M doc/source/conf.py M doc/source/index.rst M doc/source/lib/galaxy.datatypes.converters.rst M doc/source/lib/galaxy.jobs.rst M doc/source/lib/galaxy.rst M doc/source/lib/galaxy.tools.linters.rst M doc/source/lib/galaxy.tools.parameters.rst M doc/source/lib/galaxy.util.backports.rst M doc/source/lib/galaxy.util.rst M doc/source/releases/16.04.rst M doc/source/releases/16.04_announce.rst M doc/source/releases/16.07.rst M doc/source/releases/index.rst M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/checkers.py M lib/galaxy/datatypes/constructive_solid_geometry.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/dataproviders/__init__.py M lib/galaxy/datatypes/dataproviders/column.py M lib/galaxy/datatypes/dataproviders/dataset.py M lib/galaxy/datatypes/dataproviders/decorators.py M lib/galaxy/datatypes/dataproviders/line.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/metrics/instrumenters/__init__.py M lib/galaxy/managers/__init__.py M lib/galaxy/managers/base.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/libraries.py M lib/galaxy/managers/rbac_secured.py M lib/galaxy/managers/roles.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/util/simplegraph.py M lib/galaxy/webapps/galaxy/api/history_contents.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py M scripts/bootstrap_history.py M scripts/galaxy-main Log Message: ----------- Fix a bunch of errors reported by Sphinx Commit: f9ee0f86376f90ede636e4874cca120d30e7cd8c https://github.com/galaxyproject/galaxy/commit/f9ee0f86376f90ede636e4874cca… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-10-31 (Mon, 31 Oct 2016) Changed paths: M .ci/flake8_blacklist.txt M .ci/flake8_lint_include_list.txt M .ci/py3_sources.txt M .gitignore M Makefile M doc/Makefile M doc/parse_gx_xsd.py M doc/patch.py M doc/schema_template.md M doc/source/admin/conda_faq.rst M doc/source/admin/interactive_environments.rst R doc/source/admin/interactive_environments_success.png M doc/source/admin/mulled_containers.rst M doc/source/conf.py M doc/source/dev/build_a_job_runner.rst M doc/source/dev/index.rst A doc/source/dev/inherit.png A doc/source/dev/interactive_environments_success.png A doc/source/dev/queue.png A doc/source/dev/queue_b.png A doc/source/dev/runner_diag.png M doc/source/index.rst M doc/source/lib/galaxy.datatypes.converters.rst M doc/source/lib/galaxy.jobs.rst M doc/source/lib/galaxy.rst M doc/source/lib/galaxy.tools.linters.rst M doc/source/lib/galaxy.tools.parameters.rst R doc/source/lib/galaxy.util.backports.importlib.rst M doc/source/lib/galaxy.util.backports.rst M doc/source/lib/galaxy.util.rst M doc/source/releases/16.04.rst M doc/source/releases/16.04_announce.rst M doc/source/releases/16.07.rst M doc/source/releases/index.rst M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/checkers.py M lib/galaxy/datatypes/constructive_solid_geometry.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/dataproviders/__init__.py M lib/galaxy/datatypes/dataproviders/column.py M lib/galaxy/datatypes/dataproviders/dataset.py M lib/galaxy/datatypes/dataproviders/decorators.py M lib/galaxy/datatypes/dataproviders/line.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/metrics/instrumenters/__init__.py M lib/galaxy/managers/__init__.py M lib/galaxy/managers/base.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/libraries.py M lib/galaxy/managers/rbac_secured.py M lib/galaxy/managers/roles.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/simplegraph.py M lib/galaxy/webapps/galaxy/api/history_contents.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py M scripts/bootstrap_history.py R scripts/bootstrap_history_announce_template.rst M scripts/galaxy-main Log Message: ----------- Merge pull request #3086 from nsoranzo/fix_doc Properly integrate tool XML schema with docs Compare: https://github.com/galaxyproject/galaxy/compare/f0c5d5ca39d1...f9ee0f86376f

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[galaxyproject/galaxy] 10ce53: Fix qunit local testing install -- now runs on mod...
by GitHub 31 Oct '16

31 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 10ce532c15a5ab7373f40a1452f3e1ed236d3ec7 https://github.com/galaxyproject/galaxy/commit/10ce532c15a5ab7373f40a1452f3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-10-25 (Tue, 25 Oct 2016) Changed paths: M test/qunit/package.json Log Message: ----------- Fix qunit local testing install -- now runs on modern node (v6.9.1) with no system packages, just 'npm install', 'grunt'. Commit: f0c5d5ca39d1e7456aea0d81fdcba345ce28a868 https://github.com/galaxyproject/galaxy/commit/f0c5d5ca39d1e7456aea0d81fdcb… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-10-31 (Mon, 31 Oct 2016) Changed paths: M test/qunit/package.json Log Message: ----------- Merge pull request #3089 from dannon/fix_local_qunit Fix qunit local testing install -- now runs on modern node (v6.9.1) w… Compare: https://github.com/galaxyproject/galaxy/compare/29b07cbb2a5a...f0c5d5ca39d1

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[galaxyproject/galaxy] 19b568: Fix XSD for exclude_min and exclude_max attributes...
by GitHub 31 Oct '16

31 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 19b568cb9310b03b0cc74d3e6a7745b83074a0b8 https://github.com/galaxyproject/galaxy/commit/19b568cb9310b03b0cc74d3e6a77… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2016-10-28 (Fri, 28 Oct 2016) Changed paths: M lib/galaxy/tools/xsd/galaxy.xsd Log Message: ----------- Fix XSD for exclude_min and exclude_max attributes of tool param validator Commit: 29b07cbb2a5aa05eb3636dcd9c3f0e15c42d21a1 https://github.com/galaxyproject/galaxy/commit/29b07cbb2a5aa05eb3636dcd9c3f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-10-31 (Mon, 31 Oct 2016) Changed paths: M lib/galaxy/tools/xsd/galaxy.xsd Log Message: ----------- Merge pull request #3108 from gregvonkuster/xsd Fix XSD for exclude_min and exclude_max Compare: https://github.com/galaxyproject/galaxy/compare/a1e5118050ee...29b07cbb2a5a

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[galaxyproject/galaxy] 838e2c: Add routes to get genomes indexes and sequences
by GitHub 31 Oct '16

31 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 838e2cbb66f2d7138eed51e434e623f057625042 https://github.com/galaxyproject/galaxy/commit/838e2cbb66f2d7138eed51e434e6… Author: Jim Johnson <jj(a)umn.edu> Date: 2016-10-28 (Fri, 28 Oct 2016) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Add routes to get genomes indexes and sequences So igv.js can retrieve genome data Commit: a1e5118050ee5cf827396e2b2b38f147c51ed772 https://github.com/galaxyproject/galaxy/commit/a1e5118050ee5cf827396e2b2b38… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-10-31 (Mon, 31 Oct 2016) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Merge pull request #3109 from jj-umn/patch-5 Add routes to get genomes indexes and sequences Compare: https://github.com/galaxyproject/galaxy/compare/c626ff8b2eff...a1e5118050ee

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[galaxyproject/galaxy] ac9d21: Eagerload tags and annotations in history display
by GitHub 29 Oct '16

29 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ac9d21d510320de98d7db87fd97e1246d468728a https://github.com/galaxyproject/galaxy/commit/ac9d21d510320de98d7db87fd97e… Author: James Taylor <james(a)jamestaylor.org> Date: 2016-10-28 (Fri, 28 Oct 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Eagerload tags and annotations in history display Commit: c626ff8b2effa390de4816eafe507ea5b1fd1d6b https://github.com/galaxyproject/galaxy/commit/c626ff8b2effa390de4816eafe50… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-10-28 (Fri, 28 Oct 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Merge pull request #3110 from jxtx/dev Eagerload tags and annotations in history display Compare: https://github.com/galaxyproject/galaxy/compare/2458c5455fe0...c626ff8b2eff

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[galaxyproject/usegalaxy-playbook] 6be703: Update Test
by GitHub 28 Oct '16

28 Oct '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 6be70382ba086a0cde9a92594ed7b8b5276727f7 https://github.com/galaxyproject/usegalaxy-playbook/commit/6be70382ba086a0c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-10-28 (Fri, 28 Oct 2016) Changed paths: M stage/galaxy_version.yml Log Message: ----------- Update Test

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[galaxyproject/galaxy] 6e4f3d: Revert menu.js, tool-form.js to pre-webhooks-PR
by GitHub 27 Oct '16

27 Oct '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6e4f3d9d2d1a01b539d412aad5bb8fbe0ba95a17 https://github.com/galaxyproject/galaxy/commit/6e4f3d9d2d1a01b539d412aad5bb… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/tool/tool-form.js M static/maps/layout/menu.js.map M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/tool/tool-form.js Log Message: ----------- Revert menu.js, tool-form.js to pre-webhooks-PR Commit: 62773a72c728b8bab46804d2128e46f62d45cd1d https://github.com/galaxyproject/galaxy/commit/62773a72c728b8bab46804d2128e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M static/maps/layout/menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- Reapply isolated menu.js webhook changes Commit: 67b1d45e3657af077005ed7b0b1469a7fd3f42d0 https://github.com/galaxyproject/galaxy/commit/67b1d45e3657af077005ed7b0b14… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/tool/tool-form.js Log Message: ----------- Reapply isolated tool-form.js webhook changes Commit: 2458c5455fe07c7832cb30fd5bdedc9770db6f42 https://github.com/galaxyproject/galaxy/commit/2458c5455fe07c7832cb30fd5bde… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-10-27 (Thu, 27 Oct 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/tool/tool-form.js M static/maps/layout/menu.js.map M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/tool/tool-form.js Log Message: ----------- Merge pull request #3102 from dannon/fix_webhook_js_merge Fixes for remaining webhooks PR issues. Compare: https://github.com/galaxyproject/galaxy/compare/660d70f8b4da...2458c5455fe0

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galaxy-commits October 2016