Branch: refs/heads/master
Home: https://github.com/galaxyproject/galaxy
Commit: 95507c5d02cd56199c232a8cd829e46c3f43ef7a
https://github.com/galaxyproject/galaxy/commit/95507c5d02cd56199c232a8cd829…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
Log Message:
-----------
fix whitespace
Commit: e142beaffe1ee6aa853bbdb211ccf3fe1beb509e
https://github.com/galaxyproject/galaxy/commit/e142beaffe1ee6aa853bbdb211cc…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
M static/maps/mvc/library/library-folderrow-view.js.map
M static/scripts/mvc/library/library-folderrow-view.js
Log Message:
-----------
replace wrong class name
Commit: 39bc057ef9d9e62f08e3c0dbdb95d14a1ae295d2
https://github.com/galaxyproject/galaxy/commit/39bc057ef9d9e62f08e3c0dbdb95…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
fix whitespace
Commit: e19b7f656f6750cc87f7d3e7f0eb12d4292d1987
https://github.com/galaxyproject/galaxy/commit/e19b7f656f6750cc87f7d3e7f0eb…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M static/maps/mvc/library/library-foldertoolbar-view.js.map
M static/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
fix the extra slash in URL when creating folder
Commit: 87b9d1a5f44a6e42397694e16f17c97c504c1b27
https://github.com/galaxyproject/galaxy/commit/87b9d1a5f44a6e42397694e16f17…
Author: Greg Von Kuster <ghv2(a)psu.edu>
Date: 2015-11-28 (Sat, 28 Nov 2015)
Changed paths:
M lib/galaxy/datatypes/interval.py
Log Message:
-----------
Add support for Strand-specific COordinate Count datatype
Commit: 6fdff2d2f88458cef6f29ee3cb8bb895babab62c
https://github.com/galaxyproject/galaxy/commit/6fdff2d2f88458cef6f29ee3cb8b…
Author: Greg Von Kuster <ghv2(a)psu.edu>
Date: 2015-11-28 (Sat, 28 Nov 2015)
Changed paths:
M config/datatypes_conf.xml.sample
Log Message:
-----------
Add Strand-specific Coordinate Count datatype entry to the datatypes config.
Commit: 21fad8ac88a46996b2ff2719527709374f0c9913
https://github.com/galaxyproject/galaxy/commit/21fad8ac88a46996b2ff27195277…
Author: Greg Von Kuster <ghv2(a)psu.edu>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M lib/galaxy/datatypes/interval.py
Log Message:
-----------
Set the column names and edit the comments section
Commit: c532f6808efda37be88a0519e3c44ad523541fa9
https://github.com/galaxyproject/galaxy/commit/c532f6808efda37be88a0519e3c4…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/interval.py
Log Message:
-----------
Merge pull request #1186 from gregvonkuster/release_15.10
[15.10] Add support for Strand-specific Coordinate Count datatype
Commit: a03404c04d41156dd5f962a72a0ca3913969f14f
https://github.com/galaxyproject/galaxy/commit/a03404c04d41156dd5f962a72a0c…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M static/maps/mvc/library/library-folderrow-view.js.map
M static/maps/mvc/library/library-foldertoolbar-view.js.map
M static/scripts/mvc/library/library-folderrow-view.js
M static/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
Merge pull request #1162 from martenson/fix-datalibs
[15.10] Fix two bugs in datalibs
Compare: https://github.com/galaxyproject/galaxy/compare/a5200a4d5f97...a03404c04d41
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 95507c5d02cd56199c232a8cd829e46c3f43ef7a
https://github.com/galaxyproject/galaxy/commit/95507c5d02cd56199c232a8cd829…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
Log Message:
-----------
fix whitespace
Commit: e142beaffe1ee6aa853bbdb211ccf3fe1beb509e
https://github.com/galaxyproject/galaxy/commit/e142beaffe1ee6aa853bbdb211cc…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
M static/maps/mvc/library/library-folderrow-view.js.map
M static/scripts/mvc/library/library-folderrow-view.js
Log Message:
-----------
replace wrong class name
Commit: 39bc057ef9d9e62f08e3c0dbdb95d14a1ae295d2
https://github.com/galaxyproject/galaxy/commit/39bc057ef9d9e62f08e3c0dbdb95…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
fix whitespace
Commit: e19b7f656f6750cc87f7d3e7f0eb12d4292d1987
https://github.com/galaxyproject/galaxy/commit/e19b7f656f6750cc87f7d3e7f0eb…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M static/maps/mvc/library/library-foldertoolbar-view.js.map
M static/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
fix the extra slash in URL when creating folder
Commit: 87b9d1a5f44a6e42397694e16f17c97c504c1b27
https://github.com/galaxyproject/galaxy/commit/87b9d1a5f44a6e42397694e16f17…
Author: Greg Von Kuster <ghv2(a)psu.edu>
Date: 2015-11-28 (Sat, 28 Nov 2015)
Changed paths:
M lib/galaxy/datatypes/interval.py
Log Message:
-----------
Add support for Strand-specific COordinate Count datatype
Commit: 6fdff2d2f88458cef6f29ee3cb8bb895babab62c
https://github.com/galaxyproject/galaxy/commit/6fdff2d2f88458cef6f29ee3cb8b…
Author: Greg Von Kuster <ghv2(a)psu.edu>
Date: 2015-11-28 (Sat, 28 Nov 2015)
Changed paths:
M config/datatypes_conf.xml.sample
Log Message:
-----------
Add Strand-specific Coordinate Count datatype entry to the datatypes config.
Commit: 21fad8ac88a46996b2ff2719527709374f0c9913
https://github.com/galaxyproject/galaxy/commit/21fad8ac88a46996b2ff27195277…
Author: Greg Von Kuster <ghv2(a)psu.edu>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M lib/galaxy/datatypes/interval.py
Log Message:
-----------
Set the column names and edit the comments section
Commit: c532f6808efda37be88a0519e3c44ad523541fa9
https://github.com/galaxyproject/galaxy/commit/c532f6808efda37be88a0519e3c4…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/interval.py
Log Message:
-----------
Merge pull request #1186 from gregvonkuster/release_15.10
[15.10] Add support for Strand-specific Coordinate Count datatype
Commit: a03404c04d41156dd5f962a72a0ca3913969f14f
https://github.com/galaxyproject/galaxy/commit/a03404c04d41156dd5f962a72a0c…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M static/maps/mvc/library/library-folderrow-view.js.map
M static/maps/mvc/library/library-foldertoolbar-view.js.map
M static/scripts/mvc/library/library-folderrow-view.js
M static/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
Merge pull request #1162 from martenson/fix-datalibs
[15.10] Fix two bugs in datalibs
Commit: 9e28f2e786bcb2bc727f7dba571742f9d2773165
https://github.com/galaxyproject/galaxy/commit/9e28f2e786bcb2bc727f7dba5717…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/interval.py
M static/maps/mvc/library/library-folderrow-view.js.map
M static/maps/mvc/library/library-foldertoolbar-view.js.map
M static/scripts/mvc/library/library-folderrow-view.js
M static/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
Merge branch 'release_15.10' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/492fcdab9fa1...9e28f2e786bc
Branch: refs/heads/release_15.10
Home: https://github.com/galaxyproject/galaxy
Commit: 95507c5d02cd56199c232a8cd829e46c3f43ef7a
https://github.com/galaxyproject/galaxy/commit/95507c5d02cd56199c232a8cd829…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
Log Message:
-----------
fix whitespace
Commit: e142beaffe1ee6aa853bbdb211ccf3fe1beb509e
https://github.com/galaxyproject/galaxy/commit/e142beaffe1ee6aa853bbdb211cc…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
M static/maps/mvc/library/library-folderrow-view.js.map
M static/scripts/mvc/library/library-folderrow-view.js
Log Message:
-----------
replace wrong class name
Commit: 39bc057ef9d9e62f08e3c0dbdb95d14a1ae295d2
https://github.com/galaxyproject/galaxy/commit/39bc057ef9d9e62f08e3c0dbdb95…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
fix whitespace
Commit: e19b7f656f6750cc87f7d3e7f0eb12d4292d1987
https://github.com/galaxyproject/galaxy/commit/e19b7f656f6750cc87f7d3e7f0eb…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-23 (Mon, 23 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M static/maps/mvc/library/library-foldertoolbar-view.js.map
M static/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
fix the extra slash in URL when creating folder
Commit: a03404c04d41156dd5f962a72a0ca3913969f14f
https://github.com/galaxyproject/galaxy/commit/a03404c04d41156dd5f962a72a0c…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M client/galaxy/scripts/mvc/library/library-folderrow-view.js
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M static/maps/mvc/library/library-folderrow-view.js.map
M static/maps/mvc/library/library-foldertoolbar-view.js.map
M static/scripts/mvc/library/library-folderrow-view.js
M static/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
-----------
Merge pull request #1162 from martenson/fix-datalibs
[15.10] Fix two bugs in datalibs
Compare: https://github.com/galaxyproject/galaxy/compare/c532f6808efd...a03404c04d41
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 2829cab105c202a49904d65d88a9ac37dc12d81e
https://github.com/galaxyproject/galaxy/commit/2829cab105c202a49904d65d88a9…
Author: Greg Von Kuster <ghv2(a)psu.edu>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
M lib/galaxy/webapps/tool_shed/controllers/repository.py
M lib/tool_shed/util/shed_util_common.py
Log Message:
-----------
Add enhancements to the Galaxy repository install process
to cleanly handle the case described here:
https://github.com/galaxyproject/galaxy/issues/667. Specifically, the
following scenario is now cleanly handled:
Example use case: In a toolshed I have a repository of a tool, say
package_new_gene_db_1_2_3, and in revision 1 it depends on
package_sqlite_1_0_0:
package_new_gene_db_1_2_3
package_sqlite_1_0_0
At some point in time I discover that postgres is a better solution for
my gene database, and I upload revision 2:
package_new_gene_db_1_2_3
package_postgres__2_0_0
And I remove the dependecy of sqlite. If I go to my galaxy instance and
I remove revision 1 and install revision 2, the installation is cleanly
handled with theis PR.
It should be noted that this enhancement could adversely impact
reproducibility if best practices are not followed with regard to
defining package dependencies. Since it is now cleanly possible to
eliminate dependencies over time, best practices must be followed to
ensure that elimination of a dependency does not affect the output of a
tool that uses the underlying hierarchy of packages.
Commit: 492fcdab9fa1cdc1465c191289077e103d8d8020
https://github.com/galaxyproject/galaxy/commit/492fcdab9fa1cdc1465c19128907…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
M lib/galaxy/webapps/tool_shed/controllers/repository.py
M lib/tool_shed/util/shed_util_common.py
Log Message:
-----------
Merge pull request #1193 from mvdbeek/gvk_ts_fixes
Add enhancements to the Galaxy repository install process
Compare: https://github.com/galaxyproject/galaxy/compare/f35bd9ae02aa...492fcdab9fa1
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 6752fcc100e0448d6fef6d27dacb8e2467de88ee
https://github.com/galaxyproject/galaxy/commit/6752fcc100e0448d6fef6d27dacb…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-25 (Wed, 25 Nov 2015)
Changed paths:
M lib/galaxy/workflow/modules.py
M templates/webapps/galaxy/workflow/run.mako
Log Message:
-----------
Fix interface and usage of WorkflowModule.get_runtime_inputs.
Run workflow workflow form was broken for workflows with pause steps.
Fixes #1015 (thanks @afgane).
Commit: c2f93316112ce90d0f1f7fe947ce1881cae3c773
https://github.com/galaxyproject/galaxy/commit/c2f93316112ce90d0f1f7fe947ce…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-11-30 (Mon, 30 Nov 2015)
Changed paths:
M lib/galaxy/workflow/modules.py
M templates/webapps/galaxy/workflow/run.mako
Log Message:
-----------
Merge pull request #1174 from jmchilton/workflow_runtime_fix
Fix interface and usage of WorkflowModule.get_runtime_inputs.
Compare: https://github.com/galaxyproject/galaxy/compare/dc41856812f9...c2f93316112c