September 2012 - galaxy-commits - lists.galaxyproject.org

commit/galaxy-central: dannon: Update cloudlaunch text to explicitly state that instances cost money.
by Bitbucket 14 Sep '12

14 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/a5f93d5b5098/ changeset: a5f93d5b5098 user: dannon date: 2012-09-14 15:52:05 summary: Update cloudlaunch text to explicitly state that instances cost money. affected #: 1 file diff -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d -r a5f93d5b509835c9e4a29ba793c6406cb3a63ca2 templates/cloud/index.mako --- a/templates/cloud/index.mako +++ b/templates/cloud/index.mako @@ -158,8 +158,11 @@ <div id="launchFormContainer" class="toolForm"><form id="cloudlaunch_form" action="${h.url_for( controller='/cloudlaunch', action='launch_instance')}" method="post"> - <p>To launch a Galaxy Cloud Cluster, enter your AWS Secret Key ID, and Secret Key. Galaxy will use these to present appropriate -options for launching your cluster.</p> + <p>To launch a Galaxy Cloud Cluster, enter your AWS Secret Key ID, and Secret Key. Galaxy will use + these to present appropriate options for launching your cluster. Note that using this form to + launch computational resources in the Amazon Cloud will result in costs to the account indicated + above. See <a href="http://aws.amazon.com/ec2/pricing/">Amazon's pricing</a> for more information. + options for launching your cluster.</p></p><div class="form-row"><label for="id_key_id">Key ID</label> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: carlfeberhard: history.js: refactored body renderers
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/0bb0a2d4bf3c/ changeset: 0bb0a2d4bf3c user: carlfeberhard date: 2012-09-14 01:53:12 summary: history.js: refactored body renderers affected #: 19 files diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/libs/handlebars.full.js --- a/static/scripts/libs/handlebars.full.js +++ /dev/null @@ -1,1550 +0,0 @@ -// lib/handlebars/base.js -var Handlebars = {}; - -Handlebars.VERSION = "1.0.beta.6"; - -Handlebars.helpers = {}; -Handlebars.partials = {}; - -Handlebars.registerHelper = function(name, fn, inverse) { - if(inverse) { fn.not = inverse; } - this.helpers[name] = fn; -}; - -Handlebars.registerPartial = function(name, str) { - this.partials[name] = str; -}; - -Handlebars.registerHelper('helperMissing', function(arg) { - if(arguments.length === 2) { - return undefined; - } else { - throw new Error("Could not find property '" + arg + "'"); - } -}); - -var toString = Object.prototype.toString, functionType = "[object Function]"; - -Handlebars.registerHelper('blockHelperMissing', function(context, options) { - var inverse = options.inverse || function() {}, fn = options.fn; - - - var ret = ""; - var type = toString.call(context); - - if(type === functionType) { context = context.call(this); } - - if(context === true) { - return fn(this); - } else if(context === false || context == null) { - return inverse(this); - } else if(type === "[object Array]") { - if(context.length > 0) { - for(var i=0, j=context.length; i<j; i++) { - ret = ret + fn(context[i]); - } - } else { - ret = inverse(this); - } - return ret; - } else { - return fn(context); - } -}); - -Handlebars.registerHelper('each', function(context, options) { - var fn = options.fn, inverse = options.inverse; - var ret = ""; - - if(context && context.length > 0) { - for(var i=0, j=context.length; i<j; i++) { - ret = ret + fn(context[i]); - } - } else { - ret = inverse(this); - } - return ret; -}); - -Handlebars.registerHelper('if', function(context, options) { - var type = toString.call(context); - if(type === functionType) { context = context.call(this); } - - if(!context || Handlebars.Utils.isEmpty(context)) { - return options.inverse(this); - } else { - return options.fn(this); - } -}); - -Handlebars.registerHelper('unless', function(context, options) { - var fn = options.fn, inverse = options.inverse; - options.fn = inverse; - options.inverse = fn; - - return Handlebars.helpers['if'].call(this, context, options); -}); - -Handlebars.registerHelper('with', function(context, options) { - return options.fn(context); -}); - -Handlebars.registerHelper('log', function(context) { - Handlebars.log(context); -}); -; -// lib/handlebars/compiler/parser.js -/* Jison generated parser */ -var handlebars = (function(){ - -var parser = {trace: function trace() { }, -yy: {}, -symbols_: {"error":2,"root":3,"program":4,"EOF":5,"statements":6,"simpleInverse":7,"statement":8,"openInverse":9,"closeBlock":10,"openBlock":11,"mustache":12,"partial":13,"CONTENT":14,"COMMENT":15,"OPEN_BLOCK":16,"inMustache":17,"CLOSE":18,"OPEN_INVERSE":19,"OPEN_ENDBLOCK":20,"path":21,"OPEN":22,"OPEN_UNESCAPED":23,"OPEN_PARTIAL":24,"params":25,"hash":26,"param":27,"STRING":28,"INTEGER":29,"BOOLEAN":30,"hashSegments":31,"hashSegment":32,"ID":33,"EQUALS":34,"pathSegments":35,"SEP":36,"$accept":0,"$end":1}, -terminals_: {2:"error",5:"EOF",14:"CONTENT",15:"COMMENT",16:"OPEN_BLOCK",18:"CLOSE",19:"OPEN_INVERSE",20:"OPEN_ENDBLOCK",22:"OPEN",23:"OPEN_UNESCAPED",24:"OPEN_PARTIAL",28:"STRING",29:"INTEGER",30:"BOOLEAN",33:"ID",34:"EQUALS",36:"SEP"}, -productions_: [0,[3,2],[4,3],[4,1],[4,0],[6,1],[6,2],[8,3],[8,3],[8,1],[8,1],[8,1],[8,1],[11,3],[9,3],[10,3],[12,3],[12,3],[13,3],[13,4],[7,2],[17,3],[17,2],[17,2],[17,1],[25,2],[25,1],[27,1],[27,1],[27,1],[27,1],[26,1],[31,2],[31,1],[32,3],[32,3],[32,3],[32,3],[21,1],[35,3],[35,1]], -performAction: function anonymous(yytext,yyleng,yylineno,yy,yystate,$$,_$) { - -var $0 = $$.length - 1; -switch (yystate) { -case 1: return $$[$0-1] -break; -case 2: this.$ = new yy.ProgramNode($$[$0-2], $$[$0]) -break; -case 3: this.$ = new yy.ProgramNode($$[$0]) -break; -case 4: this.$ = new yy.ProgramNode([]) -break; -case 5: this.$ = [$$[$0]] -break; -case 6: $$[$0-1].push($$[$0]); this.$ = $$[$0-1] -break; -case 7: this.$ = new yy.InverseNode($$[$0-2], $$[$0-1], $$[$0]) -break; -case 8: this.$ = new yy.BlockNode($$[$0-2], $$[$0-1], $$[$0]) -break; -case 9: this.$ = $$[$0] -break; -case 10: this.$ = $$[$0] -break; -case 11: this.$ = new yy.ContentNode($$[$0]) -break; -case 12: this.$ = new yy.CommentNode($$[$0]) -break; -case 13: this.$ = new yy.MustacheNode($$[$0-1][0], $$[$0-1][1]) -break; -case 14: this.$ = new yy.MustacheNode($$[$0-1][0], $$[$0-1][1]) -break; -case 15: this.$ = $$[$0-1] -break; -case 16: this.$ = new yy.MustacheNode($$[$0-1][0], $$[$0-1][1]) -break; -case 17: this.$ = new yy.MustacheNode($$[$0-1][0], $$[$0-1][1], true) -break; -case 18: this.$ = new yy.PartialNode($$[$0-1]) -break; -case 19: this.$ = new yy.PartialNode($$[$0-2], $$[$0-1]) -break; -case 20: -break; -case 21: this.$ = [[$$[$0-2]].concat($$[$0-1]), $$[$0]] -break; -case 22: this.$ = [[$$[$0-1]].concat($$[$0]), null] -break; -case 23: this.$ = [[$$[$0-1]], $$[$0]] -break; -case 24: this.$ = [[$$[$0]], null] -break; -case 25: $$[$0-1].push($$[$0]); this.$ = $$[$0-1]; -break; -case 26: this.$ = [$$[$0]] -break; -case 27: this.$ = $$[$0] -break; -case 28: this.$ = new yy.StringNode($$[$0]) -break; -case 29: this.$ = new yy.IntegerNode($$[$0]) -break; -case 30: this.$ = new yy.BooleanNode($$[$0]) -break; -case 31: this.$ = new yy.HashNode($$[$0]) -break; -case 32: $$[$0-1].push($$[$0]); this.$ = $$[$0-1] -break; -case 33: this.$ = [$$[$0]] -break; -case 34: this.$ = [$$[$0-2], $$[$0]] -break; -case 35: this.$ = [$$[$0-2], new yy.StringNode($$[$0])] -break; -case 36: this.$ = [$$[$0-2], new yy.IntegerNode($$[$0])] -break; -case 37: this.$ = [$$[$0-2], new yy.BooleanNode($$[$0])] -break; -case 38: this.$ = new yy.IdNode($$[$0]) -break; -case 39: $$[$0-2].push($$[$0]); this.$ = $$[$0-2]; -break; -case 40: this.$ = [$$[$0]] -break; -} -}, -table: [{3:1,4:2,5:[2,4],6:3,8:4,9:5,11:6,12:7,13:8,14:[1,9],15:[1,10],16:[1,12],19:[1,11],22:[1,13],23:[1,14],24:[1,15]},{1:[3]},{5:[1,16]},{5:[2,3],7:17,8:18,9:5,11:6,12:7,13:8,14:[1,9],15:[1,10],16:[1,12],19:[1,19],20:[2,3],22:[1,13],23:[1,14],24:[1,15]},{5:[2,5],14:[2,5],15:[2,5],16:[2,5],19:[2,5],20:[2,5],22:[2,5],23:[2,5],24:[2,5]},{4:20,6:3,8:4,9:5,11:6,12:7,13:8,14:[1,9],15:[1,10],16:[1,12],19:[1,11],20:[2,4],22:[1,13],23:[1,14],24:[1,15]},{4:21,6:3,8:4,9:5,11:6,12:7,13:8,14:[1,9],15:[1,10],16:[1,12],19:[1,11],20:[2,4],22:[1,13],23:[1,14],24:[1,15]},{5:[2,9],14:[2,9],15:[2,9],16:[2,9],19:[2,9],20:[2,9],22:[2,9],23:[2,9],24:[2,9]},{5:[2,10],14:[2,10],15:[2,10],16:[2,10],19:[2,10],20:[2,10],22:[2,10],23:[2,10],24:[2,10]},{5:[2,11],14:[2,11],15:[2,11],16:[2,11],19:[2,11],20:[2,11],22:[2,11],23:[2,11],24:[2,11]},{5:[2,12],14:[2,12],15:[2,12],16:[2,12],19:[2,12],20:[2,12],22:[2,12],23:[2,12],24:[2,12]},{17:22,21:23,33:[1,25],35:24},{17:26,21:23,33:[1,25],35:24},{17:27,21:23,33:[1,25],35:24},{17:28,21:23,33:[1,25],35:24},{21:29,33:[1,25],35:24},{1:[2,1]},{6:30,8:4,9:5,11:6,12:7,13:8,14:[1,9],15:[1,10],16:[1,12],19:[1,11],22:[1,13],23:[1,14],24:[1,15]},{5:[2,6],14:[2,6],15:[2,6],16:[2,6],19:[2,6],20:[2,6],22:[2,6],23:[2,6],24:[2,6]},{17:22,18:[1,31],21:23,33:[1,25],35:24},{10:32,20:[1,33]},{10:34,20:[1,33]},{18:[1,35]},{18:[2,24],21:40,25:36,26:37,27:38,28:[1,41],29:[1,42],30:[1,43],31:39,32:44,33:[1,45],35:24},{18:[2,38],28:[2,38],29:[2,38],30:[2,38],33:[2,38],36:[1,46]},{18:[2,40],28:[2,40],29:[2,40],30:[2,40],33:[2,40],36:[2,40]},{18:[1,47]},{18:[1,48]},{18:[1,49]},{18:[1,50],21:51,33:[1,25],35:24},{5:[2,2],8:18,9:5,11:6,12:7,13:8,14:[1,9],15:[1,10],16:[1,12],19:[1,11],20:[2,2],22:[1,13],23:[1,14],24:[1,15]},{14:[2,20],15:[2,20],16:[2,20],19:[2,20],22:[2,20],23:[2,20],24:[2,20]},{5:[2,7],14:[2,7],15:[2,7],16:[2,7],19:[2,7],20:[2,7],22:[2,7],23:[2,7],24:[2,7]},{21:52,33:[1,25],35:24},{5:[2,8],14:[2,8],15:[2,8],16:[2,8],19:[2,8],20:[2,8],22:[2,8],23:[2,8],24:[2,8]},{14:[2,14],15:[2,14],16:[2,14],19:[2,14],20:[2,14],22:[2,14],23:[2,14],24:[2,14]},{18:[2,22],21:40,26:53,27:54,28:[1,41],29:[1,42],30:[1,43],31:39,32:44,33:[1,45],35:24},{18:[2,23]},{18:[2,26],28:[2,26],29:[2,26],30:[2,26],33:[2,26]},{18:[2,31],32:55,33:[1,56]},{18:[2,27],28:[2,27],29:[2,27],30:[2,27],33:[2,27]},{18:[2,28],28:[2,28],29:[2,28],30:[2,28],33:[2,28]},{18:[2,29],28:[2,29],29:[2,29],30:[2,29],33:[2,29]},{18:[2,30],28:[2,30],29:[2,30],30:[2,30],33:[2,30]},{18:[2,33],33:[2,33]},{18:[2,40],28:[2,40],29:[2,40],30:[2,40],33:[2,40],34:[1,57],36:[2,40]},{33:[1,58]},{14:[2,13],15:[2,13],16:[2,13],19:[2,13],20:[2,13],22:[2,13],23:[2,13],24:[2,13]},{5:[2,16],14:[2,16],15:[2,16],16:[2,16],19:[2,16],20:[2,16],22:[2,16],23:[2,16],24:[2,16]},{5:[2,17],14:[2,17],15:[2,17],16:[2,17],19:[2,17],20:[2,17],22:[2,17],23:[2,17],24:[2,17]},{5:[2,18],14:[2,18],15:[2,18],16:[2,18],19:[2,18],20:[2,18],22:[2,18],23:[2,18],24:[2,18]},{18:[1,59]},{18:[1,60]},{18:[2,21]},{18:[2,25],28:[2,25],29:[2,25],30:[2,25],33:[2,25]},{18:[2,32],33:[2,32]},{34:[1,57]},{21:61,28:[1,62],29:[1,63],30:[1,64],33:[1,25],35:24},{18:[2,39],28:[2,39],29:[2,39],30:[2,39],33:[2,39],36:[2,39]},{5:[2,19],14:[2,19],15:[2,19],16:[2,19],19:[2,19],20:[2,19],22:[2,19],23:[2,19],24:[2,19]},{5:[2,15],14:[2,15],15:[2,15],16:[2,15],19:[2,15],20:[2,15],22:[2,15],23:[2,15],24:[2,15]},{18:[2,34],33:[2,34]},{18:[2,35],33:[2,35]},{18:[2,36],33:[2,36]},{18:[2,37],33:[2,37]}], -defaultActions: {16:[2,1],37:[2,23],53:[2,21]}, -parseError: function parseError(str, hash) { - throw new Error(str); -}, -parse: function parse(input) { - var self = this, stack = [0], vstack = [null], lstack = [], table = this.table, yytext = "", yylineno = 0, yyleng = 0, recovering = 0, TERROR = 2, EOF = 1; - this.lexer.setInput(input); - this.lexer.yy = this.yy; - this.yy.lexer = this.lexer; - if (typeof this.lexer.yylloc == "undefined") - this.lexer.yylloc = {}; - var yyloc = this.lexer.yylloc; - lstack.push(yyloc); - if (typeof this.yy.parseError === "function") - this.parseError = this.yy.parseError; - function popStack(n) { - stack.length = stack.length - 2 * n; - vstack.length = vstack.length - n; - lstack.length = lstack.length - n; - } - function lex() { - var token; - token = self.lexer.lex() || 1; - if (typeof token !== "number") { - token = self.symbols_[token] || token; - } - return token; - } - var symbol, preErrorSymbol, state, action, a, r, yyval = {}, p, len, newState, expected; - while (true) { - state = stack[stack.length - 1]; - if (this.defaultActions[state]) { - action = this.defaultActions[state]; - } else { - if (symbol == null) - symbol = lex(); - action = table[state] && table[state][symbol]; - } - if (typeof action === "undefined" || !action.length || !action[0]) { - if (!recovering) { - expected = []; - for (p in table[state]) - if (this.terminals_[p] && p > 2) { - expected.push("'" + this.terminals_[p] + "'"); - } - var errStr = ""; - if (this.lexer.showPosition) { - errStr = "Parse error on line " + (yylineno + 1) + ":\n" + this.lexer.showPosition() + "\nExpecting " + expected.join(", ") + ", got '" + this.terminals_[symbol] + "'"; - } else { - errStr = "Parse error on line " + (yylineno + 1) + ": Unexpected " + (symbol == 1?"end of input":"'" + (this.terminals_[symbol] || symbol) + "'"); - } - this.parseError(errStr, {text: this.lexer.match, token: this.terminals_[symbol] || symbol, line: this.lexer.yylineno, loc: yyloc, expected: expected}); - } - } - if (action[0] instanceof Array && action.length > 1) { - throw new Error("Parse Error: multiple actions possible at state: " + state + ", token: " + symbol); - } - switch (action[0]) { - case 1: - stack.push(symbol); - vstack.push(this.lexer.yytext); - lstack.push(this.lexer.yylloc); - stack.push(action[1]); - symbol = null; - if (!preErrorSymbol) { - yyleng = this.lexer.yyleng; - yytext = this.lexer.yytext; - yylineno = this.lexer.yylineno; - yyloc = this.lexer.yylloc; - if (recovering > 0) - recovering--; - } else { - symbol = preErrorSymbol; - preErrorSymbol = null; - } - break; - case 2: - len = this.productions_[action[1]][1]; - yyval.$ = vstack[vstack.length - len]; - yyval._$ = {first_line: lstack[lstack.length - (len || 1)].first_line, last_line: lstack[lstack.length - 1].last_line, first_column: lstack[lstack.length - (len || 1)].first_column, last_column: lstack[lstack.length - 1].last_column}; - r = this.performAction.call(yyval, yytext, yyleng, yylineno, this.yy, action[1], vstack, lstack); - if (typeof r !== "undefined") { - return r; - } - if (len) { - stack = stack.slice(0, -1 * len * 2); - vstack = vstack.slice(0, -1 * len); - lstack = lstack.slice(0, -1 * len); - } - stack.push(this.productions_[action[1]][0]); - vstack.push(yyval.$); - lstack.push(yyval._$); - newState = table[stack[stack.length - 2]][stack[stack.length - 1]]; - stack.push(newState); - break; - case 3: - return true; - } - } - return true; -} -};/* Jison generated lexer */ -var lexer = (function(){ - -var lexer = ({EOF:1, -parseError:function parseError(str, hash) { - if (this.yy.parseError) { - this.yy.parseError(str, hash); - } else { - throw new Error(str); - } - }, -setInput:function (input) { - this._input = input; - this._more = this._less = this.done = false; - this.yylineno = this.yyleng = 0; - this.yytext = this.matched = this.match = ''; - this.conditionStack = ['INITIAL']; - this.yylloc = {first_line:1,first_column:0,last_line:1,last_column:0}; - return this; - }, -input:function () { - var ch = this._input[0]; - this.yytext+=ch; - this.yyleng++; - this.match+=ch; - this.matched+=ch; - var lines = ch.match(/\n/); - if (lines) this.yylineno++; - this._input = this._input.slice(1); - return ch; - }, -unput:function (ch) { - this._input = ch + this._input; - return this; - }, -more:function () { - this._more = true; - return this; - }, -pastInput:function () { - var past = this.matched.substr(0, this.matched.length - this.match.length); - return (past.length > 20 ? '...':'') + past.substr(-20).replace(/\n/g, ""); - }, -upcomingInput:function () { - var next = this.match; - if (next.length < 20) { - next += this._input.substr(0, 20-next.length); - } - return (next.substr(0,20)+(next.length > 20 ? '...':'')).replace(/\n/g, ""); - }, -showPosition:function () { - var pre = this.pastInput(); - var c = new Array(pre.length + 1).join("-"); - return pre + this.upcomingInput() + "\n" + c+"^"; - }, -next:function () { - if (this.done) { - return this.EOF; - } - if (!this._input) this.done = true; - - var token, - match, - col, - lines; - if (!this._more) { - this.yytext = ''; - this.match = ''; - } - var rules = this._currentRules(); - for (var i=0;i < rules.length; i++) { - match = this._input.match(this.rules[rules[i]]); - if (match) { - lines = match[0].match(/\n.*/g); - if (lines) this.yylineno += lines.length; - this.yylloc = {first_line: this.yylloc.last_line, - last_line: this.yylineno+1, - first_column: this.yylloc.last_column, - last_column: lines ? lines[lines.length-1].length-1 : this.yylloc.last_column + match[0].length} - this.yytext += match[0]; - this.match += match[0]; - this.matches = match; - this.yyleng = this.yytext.length; - this._more = false; - this._input = this._input.slice(match[0].length); - this.matched += match[0]; - token = this.performAction.call(this, this.yy, this, rules[i],this.conditionStack[this.conditionStack.length-1]); - if (token) return token; - else return; - } - } - if (this._input === "") { - return this.EOF; - } else { - this.parseError('Lexical error on line '+(this.yylineno+1)+'. Unrecognized text.\n'+this.showPosition(), - {text: "", token: null, line: this.yylineno}); - } - }, -lex:function lex() { - var r = this.next(); - if (typeof r !== 'undefined') { - return r; - } else { - return this.lex(); - } - }, -begin:function begin(condition) { - this.conditionStack.push(condition); - }, -popState:function popState() { - return this.conditionStack.pop(); - }, -_currentRules:function _currentRules() { - return this.conditions[this.conditionStack[this.conditionStack.length-1]].rules; - }, -topState:function () { - return this.conditionStack[this.conditionStack.length-2]; - }, -pushState:function begin(condition) { - this.begin(condition); - }}); -lexer.performAction = function anonymous(yy,yy_,$avoiding_name_collisions,YY_START) { - -var YYSTATE=YY_START -switch($avoiding_name_collisions) { -case 0: - if(yy_.yytext.slice(-1) !== "\\") this.begin("mu"); - if(yy_.yytext.slice(-1) === "\\") yy_.yytext = yy_.yytext.substr(0,yy_.yyleng-1), this.begin("emu"); - if(yy_.yytext) return 14; - -break; -case 1: return 14; -break; -case 2: this.popState(); return 14; -break; -case 3: return 24; -break; -case 4: return 16; -break; -case 5: return 20; -break; -case 6: return 19; -break; -case 7: return 19; -break; -case 8: return 23; -break; -case 9: return 23; -break; -case 10: yy_.yytext = yy_.yytext.substr(3,yy_.yyleng-5); this.popState(); return 15; -break; -case 11: return 22; -break; -case 12: return 34; -break; -case 13: return 33; -break; -case 14: return 33; -break; -case 15: return 36; -break; -case 16: /*ignore whitespace*/ -break; -case 17: this.popState(); return 18; -break; -case 18: this.popState(); return 18; -break; -case 19: yy_.yytext = yy_.yytext.substr(1,yy_.yyleng-2).replace(/\\"/g,'"'); return 28; -break; -case 20: return 30; -break; -case 21: return 30; -break; -case 22: return 29; -break; -case 23: return 33; -break; -case 24: yy_.yytext = yy_.yytext.substr(1, yy_.yyleng-2); return 33; -break; -case 25: return 'INVALID'; -break; -case 26: return 5; -break; -} -}; -lexer.rules = [/^[^\x00]*?(?=(\{\{))/,/^[^\x00]+/,/^[^\x00]{2,}?(?=(\{\{))/,/^\{\{>/,/^\{\{#/,/^\{\{\//,/^\{\{\^/,/^\{\{\s*else\b/,/^\{\{\{/,/^\{\{&/,/^\{\{![\s\S]*?\}\}/,/^\{\{/,/^=/,/^\.(?=[} ])/,/^\.\./,/^[\/.]/,/^\s+/,/^\}\}\}/,/^\}\}/,/^"(\\["]|[^"])*"/,/^true(?=[}\s])/,/^false(?=[}\s])/,/^[0-9]+(?=[}\s])/,/^[a-zA-Z0-9_$-]+(?=[=}\s\/.])/,/^\[[^\]]*\]/,/^./,/^$/]; -lexer.conditions = {"mu":{"rules":[3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26],"inclusive":false},"emu":{"rules":[2],"inclusive":false},"INITIAL":{"rules":[0,1,26],"inclusive":true}};return lexer;})() -parser.lexer = lexer; -return parser; -})(); -if (typeof require !== 'undefined' && typeof exports !== 'undefined') { -exports.parser = handlebars; -exports.parse = function () { return handlebars.parse.apply(handlebars, arguments); } -exports.main = function commonjsMain(args) { - if (!args[1]) - throw new Error('Usage: '+args[0]+' FILE'); - if (typeof process !== 'undefined') { - var source = require('fs').readFileSync(require('path').join(process.cwd(), args[1]), "utf8"); - } else { - var cwd = require("file").path(require("file").cwd()); - var source = cwd.join(args[1]).read({charset: "utf-8"}); - } - return exports.parser.parse(source); -} -if (typeof module !== 'undefined' && require.main === module) { - exports.main(typeof process !== 'undefined' ? process.argv.slice(1) : require("system").args); -} -}; -; -// lib/handlebars/compiler/base.js -Handlebars.Parser = handlebars; - -Handlebars.parse = function(string) { - Handlebars.Parser.yy = Handlebars.AST; - return Handlebars.Parser.parse(string); -}; - -Handlebars.print = function(ast) { - return new Handlebars.PrintVisitor().accept(ast); -}; - -Handlebars.logger = { - DEBUG: 0, INFO: 1, WARN: 2, ERROR: 3, level: 3, - - // override in the host environment - log: function(level, str) {} -}; - -Handlebars.log = function(level, str) { Handlebars.logger.log(level, str); }; -; -// lib/handlebars/compiler/ast.js -(function() { - - Handlebars.AST = {}; - - Handlebars.AST.ProgramNode = function(statements, inverse) { - this.type = "program"; - this.statements = statements; - if(inverse) { this.inverse = new Handlebars.AST.ProgramNode(inverse); } - }; - - Handlebars.AST.MustacheNode = function(params, hash, unescaped) { - this.type = "mustache"; - this.id = params[0]; - this.params = params.slice(1); - this.hash = hash; - this.escaped = !unescaped; - }; - - Handlebars.AST.PartialNode = function(id, context) { - this.type = "partial"; - - // TODO: disallow complex IDs - - this.id = id; - this.context = context; - }; - - var verifyMatch = function(open, close) { - if(open.original !== close.original) { - throw new Handlebars.Exception(open.original + " doesn't match " + close.original); - } - }; - - Handlebars.AST.BlockNode = function(mustache, program, close) { - verifyMatch(mustache.id, close); - this.type = "block"; - this.mustache = mustache; - this.program = program; - }; - - Handlebars.AST.InverseNode = function(mustache, program, close) { - verifyMatch(mustache.id, close); - this.type = "inverse"; - this.mustache = mustache; - this.program = program; - }; - - Handlebars.AST.ContentNode = function(string) { - this.type = "content"; - this.string = string; - }; - - Handlebars.AST.HashNode = function(pairs) { - this.type = "hash"; - this.pairs = pairs; - }; - - Handlebars.AST.IdNode = function(parts) { - this.type = "ID"; - this.original = parts.join("."); - - var dig = [], depth = 0; - - for(var i=0,l=parts.length; i<l; i++) { - var part = parts[i]; - - if(part === "..") { depth++; } - else if(part === "." || part === "this") { this.isScoped = true; } - else { dig.push(part); } - } - - this.parts = dig; - this.string = dig.join('.'); - this.depth = depth; - this.isSimple = (dig.length === 1) && (depth === 0); - }; - - Handlebars.AST.StringNode = function(string) { - this.type = "STRING"; - this.string = string; - }; - - Handlebars.AST.IntegerNode = function(integer) { - this.type = "INTEGER"; - this.integer = integer; - }; - - Handlebars.AST.BooleanNode = function(bool) { - this.type = "BOOLEAN"; - this.bool = bool; - }; - - Handlebars.AST.CommentNode = function(comment) { - this.type = "comment"; - this.comment = comment; - }; - -})();; -// lib/handlebars/utils.js -Handlebars.Exception = function(message) { - var tmp = Error.prototype.constructor.apply(this, arguments); - - for (var p in tmp) { - if (tmp.hasOwnProperty(p)) { this[p] = tmp[p]; } - } - - this.message = tmp.message; -}; -Handlebars.Exception.prototype = new Error; - -// Build out our basic SafeString type -Handlebars.SafeString = function(string) { - this.string = string; -}; -Handlebars.SafeString.prototype.toString = function() { - return this.string.toString(); -}; - -(function() { - var escape = { - "<": "<", - ">": ">", - '"': """, - "'": "'", - "`": "`" - }; - - var badChars = /&(?!\w+;)|[<>"'`]/g; - var possible = /[&<>"'`]/; - - var escapeChar = function(chr) { - return escape[chr] || "&"; - }; - - Handlebars.Utils = { - escapeExpression: function(string) { - // don't escape SafeStrings, since they're already safe - if (string instanceof Handlebars.SafeString) { - return string.toString(); - } else if (string == null || string === false) { - return ""; - } - - if(!possible.test(string)) { return string; } - return string.replace(badChars, escapeChar); - }, - - isEmpty: function(value) { - if (typeof value === "undefined") { - return true; - } else if (value === null) { - return true; - } else if (value === false) { - return true; - } else if(Object.prototype.toString.call(value) === "[object Array]" && value.length === 0) { - return true; - } else { - return false; - } - } - }; -})();; -// lib/handlebars/compiler/compiler.js -Handlebars.Compiler = function() {}; -Handlebars.JavaScriptCompiler = function() {}; - -(function(Compiler, JavaScriptCompiler) { - Compiler.OPCODE_MAP = { - appendContent: 1, - getContext: 2, - lookupWithHelpers: 3, - lookup: 4, - append: 5, - invokeMustache: 6, - appendEscaped: 7, - pushString: 8, - truthyOrFallback: 9, - functionOrFallback: 10, - invokeProgram: 11, - invokePartial: 12, - push: 13, - assignToHash: 15, - pushStringParam: 16 - }; - - Compiler.MULTI_PARAM_OPCODES = { - appendContent: 1, - getContext: 1, - lookupWithHelpers: 2, - lookup: 1, - invokeMustache: 3, - pushString: 1, - truthyOrFallback: 1, - functionOrFallback: 1, - invokeProgram: 3, - invokePartial: 1, - push: 1, - assignToHash: 1, - pushStringParam: 1 - }; - - Compiler.DISASSEMBLE_MAP = {}; - - for(var prop in Compiler.OPCODE_MAP) { - var value = Compiler.OPCODE_MAP[prop]; - Compiler.DISASSEMBLE_MAP[value] = prop; - } - - Compiler.multiParamSize = function(code) { - return Compiler.MULTI_PARAM_OPCODES[Compiler.DISASSEMBLE_MAP[code]]; - }; - - Compiler.prototype = { - compiler: Compiler, - - disassemble: function() { - var opcodes = this.opcodes, opcode, nextCode; - var out = [], str, name, value; - - for(var i=0, l=opcodes.length; i<l; i++) { - opcode = opcodes[i]; - - if(opcode === 'DECLARE') { - name = opcodes[++i]; - value = opcodes[++i]; - out.push("DECLARE " + name + " = " + value); - } else { - str = Compiler.DISASSEMBLE_MAP[opcode]; - - var extraParams = Compiler.multiParamSize(opcode); - var codes = []; - - for(var j=0; j<extraParams; j++) { - nextCode = opcodes[++i]; - - if(typeof nextCode === "string") { - nextCode = "\"" + nextCode.replace("\n", "\\n") + "\""; - } - - codes.push(nextCode); - } - - str = str + " " + codes.join(" "); - - out.push(str); - } - } - - return out.join("\n"); - }, - - guid: 0, - - compile: function(program, options) { - this.children = []; - this.depths = {list: []}; - this.options = options; - - // These changes will propagate to the other compiler components - var knownHelpers = this.options.knownHelpers; - this.options.knownHelpers = { - 'helperMissing': true, - 'blockHelperMissing': true, - 'each': true, - 'if': true, - 'unless': true, - 'with': true, - 'log': true - }; - if (knownHelpers) { - for (var name in knownHelpers) { - this.options.knownHelpers[name] = knownHelpers[name]; - } - } - - return this.program(program); - }, - - accept: function(node) { - return this[node.type](node); - }, - - program: function(program) { - var statements = program.statements, statement; - this.opcodes = []; - - for(var i=0, l=statements.length; i<l; i++) { - statement = statements[i]; - this[statement.type](statement); - } - this.isSimple = l === 1; - - this.depths.list = this.depths.list.sort(function(a, b) { - return a - b; - }); - - return this; - }, - - compileProgram: function(program) { - var result = new this.compiler().compile(program, this.options); - var guid = this.guid++; - - this.usePartial = this.usePartial || result.usePartial; - - this.children[guid] = result; - - for(var i=0, l=result.depths.list.length; i<l; i++) { - depth = result.depths.list[i]; - - if(depth < 2) { continue; } - else { this.addDepth(depth - 1); } - } - - return guid; - }, - - block: function(block) { - var mustache = block.mustache; - var depth, child, inverse, inverseGuid; - - var params = this.setupStackForMustache(mustache); - - var programGuid = this.compileProgram(block.program); - - if(block.program.inverse) { - inverseGuid = this.compileProgram(block.program.inverse); - this.declare('inverse', inverseGuid); - } - - this.opcode('invokeProgram', programGuid, params.length, !!mustache.hash); - this.declare('inverse', null); - this.opcode('append'); - }, - - inverse: function(block) { - var params = this.setupStackForMustache(block.mustache); - - var programGuid = this.compileProgram(block.program); - - this.declare('inverse', programGuid); - - this.opcode('invokeProgram', null, params.length, !!block.mustache.hash); - this.declare('inverse', null); - this.opcode('append'); - }, - - hash: function(hash) { - var pairs = hash.pairs, pair, val; - - this.opcode('push', '{}'); - - for(var i=0, l=pairs.length; i<l; i++) { - pair = pairs[i]; - val = pair[1]; - - this.accept(val); - this.opcode('assignToHash', pair[0]); - } - }, - - partial: function(partial) { - var id = partial.id; - this.usePartial = true; - - if(partial.context) { - this.ID(partial.context); - } else { - this.opcode('push', 'depth0'); - } - - this.opcode('invokePartial', id.original); - this.opcode('append'); - }, - - content: function(content) { - this.opcode('appendContent', content.string); - }, - - mustache: function(mustache) { - var params = this.setupStackForMustache(mustache); - - this.opcode('invokeMustache', params.length, mustache.id.original, !!mustache.hash); - - if(mustache.escaped && !this.options.noEscape) { - this.opcode('appendEscaped'); - } else { - this.opcode('append'); - } - }, - - ID: function(id) { - this.addDepth(id.depth); - - this.opcode('getContext', id.depth); - - this.opcode('lookupWithHelpers', id.parts[0] || null, id.isScoped || false); - - for(var i=1, l=id.parts.length; i<l; i++) { - this.opcode('lookup', id.parts[i]); - } - }, - - STRING: function(string) { - this.opcode('pushString', string.string); - }, - - INTEGER: function(integer) { - this.opcode('push', integer.integer); - }, - - BOOLEAN: function(bool) { - this.opcode('push', bool.bool); - }, - - comment: function() {}, - - // HELPERS - pushParams: function(params) { - var i = params.length, param; - - while(i--) { - param = params[i]; - - if(this.options.stringParams) { - if(param.depth) { - this.addDepth(param.depth); - } - - this.opcode('getContext', param.depth || 0); - this.opcode('pushStringParam', param.string); - } else { - this[param.type](param); - } - } - }, - - opcode: function(name, val1, val2, val3) { - this.opcodes.push(Compiler.OPCODE_MAP[name]); - if(val1 !== undefined) { this.opcodes.push(val1); } - if(val2 !== undefined) { this.opcodes.push(val2); } - if(val3 !== undefined) { this.opcodes.push(val3); } - }, - - declare: function(name, value) { - this.opcodes.push('DECLARE'); - this.opcodes.push(name); - this.opcodes.push(value); - }, - - addDepth: function(depth) { - if(depth === 0) { return; } - - if(!this.depths[depth]) { - this.depths[depth] = true; - this.depths.list.push(depth); - } - }, - - setupStackForMustache: function(mustache) { - var params = mustache.params; - - this.pushParams(params); - - if(mustache.hash) { - this.hash(mustache.hash); - } - - this.ID(mustache.id); - - return params; - } - }; - - JavaScriptCompiler.prototype = { - // PUBLIC API: You can override these methods in a subclass to provide - // alternative compiled forms for name lookup and buffering semantics - nameLookup: function(parent, name, type) { - if (/^[0-9]+$/.test(name)) { - return parent + "[" + name + "]"; - } else if (JavaScriptCompiler.isValidJavaScriptVariableName(name)) { - return parent + "." + name; - } - else { - return parent + "['" + name + "']"; - } - }, - - appendToBuffer: function(string) { - if (this.environment.isSimple) { - return "return " + string + ";"; - } else { - return "buffer += " + string + ";"; - } - }, - - initializeBuffer: function() { - return this.quotedString(""); - }, - - namespace: "Handlebars", - // END PUBLIC API - - compile: function(environment, options, context, asObject) { - this.environment = environment; - this.options = options || {}; - - this.name = this.environment.name; - this.isChild = !!context; - this.context = context || { - programs: [], - aliases: { self: 'this' }, - registers: {list: []} - }; - - this.preamble(); - - this.stackSlot = 0; - this.stackVars = []; - - this.compileChildren(environment, options); - - var opcodes = environment.opcodes, opcode; - - this.i = 0; - - for(l=opcodes.length; this.i<l; this.i++) { - opcode = this.nextOpcode(0); - - if(opcode[0] === 'DECLARE') { - this.i = this.i + 2; - this[opcode[1]] = opcode[2]; - } else { - this.i = this.i + opcode[1].length; - this[opcode[0]].apply(this, opcode[1]); - } - } - - return this.createFunctionContext(asObject); - }, - - nextOpcode: function(n) { - var opcodes = this.environment.opcodes, opcode = opcodes[this.i + n], name, val; - var extraParams, codes; - - if(opcode === 'DECLARE') { - name = opcodes[this.i + 1]; - val = opcodes[this.i + 2]; - return ['DECLARE', name, val]; - } else { - name = Compiler.DISASSEMBLE_MAP[opcode]; - - extraParams = Compiler.multiParamSize(opcode); - codes = []; - - for(var j=0; j<extraParams; j++) { - codes.push(opcodes[this.i + j + 1 + n]); - } - - return [name, codes]; - } - }, - - eat: function(opcode) { - this.i = this.i + opcode.length; - }, - - preamble: function() { - var out = []; - - // this register will disambiguate helper lookup from finding a function in - // a context. This is necessary for mustache compatibility, which requires - // that context functions in blocks are evaluated by blockHelperMissing, and - // then proceed as if the resulting value was provided to blockHelperMissing. - this.useRegister('foundHelper'); - - if (!this.isChild) { - var namespace = this.namespace; - var copies = "helpers = helpers || " + namespace + ".helpers;"; - if(this.environment.usePartial) { copies = copies + " partials = partials || " + namespace + ".partials;"; } - out.push(copies); - } else { - out.push(''); - } - - if (!this.environment.isSimple) { - out.push(", buffer = " + this.initializeBuffer()); - } else { - out.push(""); - } - - // track the last context pushed into place to allow skipping the - // getContext opcode when it would be a noop - this.lastContext = 0; - this.source = out; - }, - - createFunctionContext: function(asObject) { - var locals = this.stackVars; - if (!this.isChild) { - locals = locals.concat(this.context.registers.list); - } - - if(locals.length > 0) { - this.source[1] = this.source[1] + ", " + locals.join(", "); - } - - // Generate minimizer alias mappings - if (!this.isChild) { - var aliases = [] - for (var alias in this.context.aliases) { - this.source[1] = this.source[1] + ', ' + alias + '=' + this.context.aliases[alias]; - } - } - - if (this.source[1]) { - this.source[1] = "var " + this.source[1].substring(2) + ";"; - } - - // Merge children - if (!this.isChild) { - this.source[1] += '\n' + this.context.programs.join('\n') + '\n'; - } - - if (!this.environment.isSimple) { - this.source.push("return buffer;"); - } - - var params = this.isChild ? ["depth0", "data"] : ["Handlebars", "depth0", "helpers", "partials", "data"]; - - for(var i=0, l=this.environment.depths.list.length; i<l; i++) { - params.push("depth" + this.environment.depths.list[i]); - } - - if (asObject) { - params.push(this.source.join("\n ")); - - return Function.apply(this, params); - } else { - var functionSource = 'function ' + (this.name || '') + '(' + params.join(',') + ') {\n ' + this.source.join("\n ") + '}'; - Handlebars.log(Handlebars.logger.DEBUG, functionSource + "\n\n"); - return functionSource; - } - }, - - appendContent: function(content) { - this.source.push(this.appendToBuffer(this.quotedString(content))); - }, - - append: function() { - var local = this.popStack(); - this.source.push("if(" + local + " || " + local + " === 0) { " + this.appendToBuffer(local) + " }"); - if (this.environment.isSimple) { - this.source.push("else { " + this.appendToBuffer("''") + " }"); - } - }, - - appendEscaped: function() { - var opcode = this.nextOpcode(1), extra = ""; - this.context.aliases.escapeExpression = 'this.escapeExpression'; - - if(opcode[0] === 'appendContent') { - extra = " + " + this.quotedString(opcode[1][0]); - this.eat(opcode); - } - - this.source.push(this.appendToBuffer("escapeExpression(" + this.popStack() + ")" + extra)); - }, - - getContext: function(depth) { - if(this.lastContext !== depth) { - this.lastContext = depth; - } - }, - - lookupWithHelpers: function(name, isScoped) { - if(name) { - var topStack = this.nextStack(); - - this.usingKnownHelper = false; - - var toPush; - if (!isScoped && this.options.knownHelpers[name]) { - toPush = topStack + " = " + this.nameLookup('helpers', name, 'helper'); - this.usingKnownHelper = true; - } else if (isScoped || this.options.knownHelpersOnly) { - toPush = topStack + " = " + this.nameLookup('depth' + this.lastContext, name, 'context'); - } else { - this.register('foundHelper', this.nameLookup('helpers', name, 'helper')); - toPush = topStack + " = foundHelper || " + this.nameLookup('depth' + this.lastContext, name, 'context'); - } - - toPush += ';'; - this.source.push(toPush); - } else { - this.pushStack('depth' + this.lastContext); - } - }, - - lookup: function(name) { - var topStack = this.topStack(); - this.source.push(topStack + " = (" + topStack + " === null || " + topStack + " === undefined || " + topStack + " === false ? " + - topStack + " : " + this.nameLookup(topStack, name, 'context') + ");"); - }, - - pushStringParam: function(string) { - this.pushStack('depth' + this.lastContext); - this.pushString(string); - }, - - pushString: function(string) { - this.pushStack(this.quotedString(string)); - }, - - push: function(name) { - this.pushStack(name); - }, - - invokeMustache: function(paramSize, original, hasHash) { - this.populateParams(paramSize, this.quotedString(original), "{}", null, hasHash, function(nextStack, helperMissingString, id) { - if (!this.usingKnownHelper) { - this.context.aliases.helperMissing = 'helpers.helperMissing'; - this.context.aliases.undef = 'void 0'; - this.source.push("else if(" + id + "=== undef) { " + nextStack + " = helperMissing.call(" + helperMissingString + "); }"); - if (nextStack !== id) { - this.source.push("else { " + nextStack + " = " + id + "; }"); - } - } - }); - }, - - invokeProgram: function(guid, paramSize, hasHash) { - var inverse = this.programExpression(this.inverse); - var mainProgram = this.programExpression(guid); - - this.populateParams(paramSize, null, mainProgram, inverse, hasHash, function(nextStack, helperMissingString, id) { - if (!this.usingKnownHelper) { - this.context.aliases.blockHelperMissing = 'helpers.blockHelperMissing'; - this.source.push("else { " + nextStack + " = blockHelperMissing.call(" + helperMissingString + "); }"); - } - }); - }, - - populateParams: function(paramSize, helperId, program, inverse, hasHash, fn) { - var needsRegister = hasHash || this.options.stringParams || inverse || this.options.data; - var id = this.popStack(), nextStack; - var params = [], param, stringParam, stringOptions; - - if (needsRegister) { - this.register('tmp1', program); - stringOptions = 'tmp1'; - } else { - stringOptions = '{ hash: {} }'; - } - - if (needsRegister) { - var hash = (hasHash ? this.popStack() : '{}'); - this.source.push('tmp1.hash = ' + hash + ';'); - } - - if(this.options.stringParams) { - this.source.push('tmp1.contexts = [];'); - } - - for(var i=0; i<paramSize; i++) { - param = this.popStack(); - params.push(param); - - if(this.options.stringParams) { - this.source.push('tmp1.contexts.push(' + this.popStack() + ');'); - } - } - - if(inverse) { - this.source.push('tmp1.fn = tmp1;'); - this.source.push('tmp1.inverse = ' + inverse + ';'); - } - - if(this.options.data) { - this.source.push('tmp1.data = data;'); - } - - params.push(stringOptions); - - this.populateCall(params, id, helperId || id, fn, program !== '{}'); - }, - - populateCall: function(params, id, helperId, fn, program) { - var paramString = ["depth0"].concat(params).join(", "); - var helperMissingString = ["depth0"].concat(helperId).concat(params).join(", "); - - var nextStack = this.nextStack(); - - if (this.usingKnownHelper) { - this.source.push(nextStack + " = " + id + ".call(" + paramString + ");"); - } else { - this.context.aliases.functionType = '"function"'; - var condition = program ? "foundHelper && " : "" - this.source.push("if(" + condition + "typeof " + id + " === functionType) { " + nextStack + " = " + id + ".call(" + paramString + "); }"); - } - fn.call(this, nextStack, helperMissingString, id); - this.usingKnownHelper = false; - }, - - invokePartial: function(context) { - params = [this.nameLookup('partials', context, 'partial'), "'" + context + "'", this.popStack(), "helpers", "partials"]; - - if (this.options.data) { - params.push("data"); - } - - this.pushStack("self.invokePartial(" + params.join(", ") + ");"); - }, - - assignToHash: function(key) { - var value = this.popStack(); - var hash = this.topStack(); - - this.source.push(hash + "['" + key + "'] = " + value + ";"); - }, - - // HELPERS - - compiler: JavaScriptCompiler, - - compileChildren: function(environment, options) { - var children = environment.children, child, compiler; - - for(var i=0, l=children.length; i<l; i++) { - child = children[i]; - compiler = new this.compiler(); - - this.context.programs.push(''); // Placeholder to prevent name conflicts for nested children - var index = this.context.programs.length; - child.index = index; - child.name = 'program' + index; - this.context.programs[index] = compiler.compile(child, options, this.context); - } - }, - - programExpression: function(guid) { - if(guid == null) { return "self.noop"; } - - var child = this.environment.children[guid], - depths = child.depths.list; - var programParams = [child.index, child.name, "data"]; - - for(var i=0, l = depths.length; i<l; i++) { - depth = depths[i]; - - if(depth === 1) { programParams.push("depth0"); } - else { programParams.push("depth" + (depth - 1)); } - } - - if(depths.length === 0) { - return "self.program(" + programParams.join(", ") + ")"; - } else { - programParams.shift(); - return "self.programWithDepth(" + programParams.join(", ") + ")"; - } - }, - - register: function(name, val) { - this.useRegister(name); - this.source.push(name + " = " + val + ";"); - }, - - useRegister: function(name) { - if(!this.context.registers[name]) { - this.context.registers[name] = true; - this.context.registers.list.push(name); - } - }, - - pushStack: function(item) { - this.source.push(this.nextStack() + " = " + item + ";"); - return "stack" + this.stackSlot; - }, - - nextStack: function() { - this.stackSlot++; - if(this.stackSlot > this.stackVars.length) { this.stackVars.push("stack" + this.stackSlot); } - return "stack" + this.stackSlot; - }, - - popStack: function() { - return "stack" + this.stackSlot--; - }, - - topStack: function() { - return "stack" + this.stackSlot; - }, - - quotedString: function(str) { - return '"' + str - .replace(/\\/g, '\\\\') - .replace(/"/g, '\\"') - .replace(/\n/g, '\\n') - .replace(/\r/g, '\\r') + '"'; - } - }; - - var reservedWords = ( - "break else new var" + - " case finally return void" + - " catch for switch while" + - " continue function this with" + - " default if throw" + - " delete in try" + - " do instanceof typeof" + - " abstract enum int short" + - " boolean export interface static" + - " byte extends long super" + - " char final native synchronized" + - " class float package throws" + - " const goto private transient" + - " debugger implements protected volatile" + - " double import public let yield" - ).split(" "); - - var compilerWords = JavaScriptCompiler.RESERVED_WORDS = {}; - - for(var i=0, l=reservedWords.length; i<l; i++) { - compilerWords[reservedWords[i]] = true; - } - - JavaScriptCompiler.isValidJavaScriptVariableName = function(name) { - if(!JavaScriptCompiler.RESERVED_WORDS[name] && /^[a-zA-Z_$][0-9a-zA-Z_$]+$/.test(name)) { - return true; - } - return false; - } - -})(Handlebars.Compiler, Handlebars.JavaScriptCompiler); - -Handlebars.precompile = function(string, options) { - options = options || {}; - - var ast = Handlebars.parse(string); - var environment = new Handlebars.Compiler().compile(ast, options); - return new Handlebars.JavaScriptCompiler().compile(environment, options); -}; - -Handlebars.compile = function(string, options) { - options = options || {}; - - var compiled; - function compile() { - var ast = Handlebars.parse(string); - var environment = new Handlebars.Compiler().compile(ast, options); - var templateSpec = new Handlebars.JavaScriptCompiler().compile(environment, options, undefined, true); - return Handlebars.template(templateSpec); - } - - // Template is only compiled on first use and cached after that point. - return function(context, options) { - if (!compiled) { - compiled = compile(); - } - return compiled.call(this, context, options); - }; -}; -; -// lib/handlebars/runtime.js -Handlebars.VM = { - template: function(templateSpec) { - // Just add water - var container = { - escapeExpression: Handlebars.Utils.escapeExpression, - invokePartial: Handlebars.VM.invokePartial, - programs: [], - program: function(i, fn, data) { - var programWrapper = this.programs[i]; - if(data) { - return Handlebars.VM.program(fn, data); - } else if(programWrapper) { - return programWrapper; - } else { - programWrapper = this.programs[i] = Handlebars.VM.program(fn); - return programWrapper; - } - }, - programWithDepth: Handlebars.VM.programWithDepth, - noop: Handlebars.VM.noop - }; - - return function(context, options) { - options = options || {}; - return templateSpec.call(container, Handlebars, context, options.helpers, options.partials, options.data); - }; - }, - - programWithDepth: function(fn, data, $depth) { - var args = Array.prototype.slice.call(arguments, 2); - - return function(context, options) { - options = options || {}; - - return fn.apply(this, [context, options.data || data].concat(args)); - }; - }, - program: function(fn, data) { - return function(context, options) { - options = options || {}; - - return fn(context, options.data || data); - }; - }, - noop: function() { return ""; }, - invokePartial: function(partial, name, context, helpers, partials, data) { - options = { helpers: helpers, partials: partials, data: data }; - - if(partial === undefined) { - throw new Handlebars.Exception("The partial " + name + " could not be found"); - } else if(partial instanceof Function) { - return partial(context, options); - } else if (!Handlebars.compile) { - throw new Handlebars.Exception("The partial " + name + " could not be compiled when running in runtime-only mode"); - } else { - partials[name] = Handlebars.compile(partial); - return partials[name](context, options); - } - } -}; - -Handlebars.template = Handlebars.VM.template; -; diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/mvc/history.js --- a/static/scripts/mvc/history.js +++ b/static/scripts/mvc/history.js @@ -3,34 +3,33 @@ TODO: replicate then refactor (could be the wrong order) - History meta controls (rename, annotate, etc. - see history.js.120823.bak) - choose a templating system and use it consistently - HIview state transitions (eg. upload -> ok), curr: build new, delete old, place new (in render) - events (local/ui and otherwise) - widget building (popupmenu, etc.) - localization - incorporate relations - convert function comments to /** style - complete comments + + fix: + tags + annotations + _render_displayApps + _render_downloadButton + widget building (popupmenu, etc.) don't draw body until it's first unhide event - - as always: where does the model end and the view begin? - HistoryPanel + all history.mako js -> this + HIview state transitions (eg. upload -> ok), curr: build new, delete old, place new (in render) + History (meta controls : collapse all, rename, annotate, etc. - see history.js.120823.bak) + events (local/ui and otherwise) HistoryCollection: (collection of History: 'Saved Histories') - CASES: - logged-in/NOT - show-deleted/DONT - - ?? anyway to _clone_ base HistoryItemView instead of creating a new one each time? + ?move IconButtonViews -> templates? + + convert function comments to jsDoc style, complete comments + collection -> show_deleted, show_hidden + poly HistoryItemView on: for_editing, display_structured, trans.user + incorporate relations? + localization + template helper {{#local}} calls _l() move inline styles into base.less add classes, ids on empty divs - localized text from template watch the magic strings - - poly HistoryItemView on: can/cant_edit */ //============================================================================== @@ -121,6 +120,12 @@ initialize : function(){ this.log( this + '.initialize', this.attributes ); this.log( '\tparent history_id: ' + this.get( 'history_id' ) ); + + //TODO: accessible is set in alt_hist + // this state is not in trans.app.model.Dataset.states - set it here + if( !this.get( 'accessible' ) ){ + this.set( 'state', HistoryItem.STATES.NOT_VIEWABLE ); + } }, isEditable : function(){ @@ -148,14 +153,15 @@ //------------------------------------------------------------------------------ HistoryItem.STATES = { - NEW : 'new', - UPLOAD : 'upload', - QUEUED : 'queued', - RUNNING : 'running', - OK : 'ok', - EMPTY : 'empty', - ERROR : 'error', - DISCARDED : 'discarded', + NOT_VIEWABLE : 'not_viewable', // not in trans.app.model.Dataset.states + NEW : 'new', + UPLOAD : 'upload', + QUEUED : 'queued', + RUNNING : 'running', + OK : 'ok', + EMPTY : 'empty', + ERROR : 'error', + DISCARDED : 'discarded', SETTING_METADATA : 'setting_metadata', FAILED_METADATA : 'failed_metadata' }; @@ -175,13 +181,11 @@ // ................................................................................ SET UP initialize : function(){ this.log( this + '.initialize:', this, this.model ); - }, // ................................................................................ RENDER MAIN //??: this style builds an entire, new DOM tree - is that what we want?? render : function(){ - this.log( this + '.model:', this.model ); var id = this.model.get( 'id' ), state = this.model.get( 'state' ); this.clearReferences(); @@ -214,6 +218,7 @@ clearReferences : function(){ //??TODO: best way? + //?? do we really need these - not so far this.displayButton = null; this.editButton = null; this.deleteButton = null; @@ -235,7 +240,7 @@ return titleBar; }, - // ................................................................................ DISPLAY, EDIT ATTR, DELETE + // ................................................................................ display, edit attr, delete _render_titleButtons : function(){ // render the display, edit attr and delete icon-buttons var buttonDiv = $( '<div class="historyItemButtons"></div>' ); @@ -245,11 +250,7 @@ return buttonDiv; }, - //TODO: refactor the following three - use extend for new href (with model data or something else) - //TODO: move other data (non-href) into {} in view definition, cycle over those keys in _titlebuttons - //TODO: move disabled span data into view def, move logic into _titlebuttons _render_displayButton : function(){ - // don't show display while uploading if( this.model.get( 'state' ) === HistoryItem.STATES.UPLOAD ){ return null; } @@ -257,21 +258,20 @@ displayBtnData = ( this.model.get( 'purged' ) )?({ title : 'Cannot display datasets removed from disk', enabled : false, - icon_class : 'display', + icon_class : 'display' // if not, render the display icon-button with href }):({ title : 'Display data in browser', href : this.model.get( 'display_url' ), target : ( this.model.get( 'for_editing' ) )?( 'galaxy_main' ):( null ), - icon_class : 'display', + icon_class : 'display' }); this.displayButton = new IconButtonView({ model : new IconButton( displayBtnData ) }); return this.displayButton.render().$el; }, _render_editButton : function(){ - // don't show edit while uploading, or if editable if( ( this.model.get( 'state' ) === HistoryItem.STATES.UPLOAD ) || ( !this.model.get( 'for_editing' ) ) ){ @@ -306,29 +306,266 @@ // don't show delete if not editable if( !this.model.get( 'for_editing' ) ){ return null; } - var deleteBtnData = ( this.model.get( 'delete_url' ) )?({ + var deleteBtnData = { title : 'Delete', href : this.model.get( 'delete_url' ), target : 'galaxy_main', id : 'historyItemDeleter-' + this.model.get( 'id' ), icon_class : 'delete' - }):({ - title : 'Dataset is already deleted', - icon_class : 'delete', - enabled : false - }); + }; + if( ( this.model.get( 'deleted' ) || this.model.get( 'purged' ) ) + && ( !this.model.get( 'delete_url' ) ) ){ + deleteBtnData = { + title : 'Dataset is already deleted', + icon_class : 'delete', + enabled : false + }; + } this.deleteButton = new IconButtonView({ model : new IconButton( deleteBtnData ) }); return this.deleteButton.render().$el; }, + // ................................................................................ titleLink _render_titleLink : function(){ - this.log( 'model:', this.model.toJSON() ); return $( jQuery.trim( HistoryItemView.templates.titleLink( this.model.toJSON() ) ) ); }, // ................................................................................ RENDER BODY + _render_hdaSummary : function(){ + var modelData = this.model.toJSON(); + // if there's no dbkey and it's editable : pass a flag to the template to render a link to editing in the '?' + if( this.model.get( 'metadata_dbkey' ) === '?' + && this.model.isEditable() ){ + _.extend( modelData, { dbkey_unknown_and_editable : true }); + } + return HistoryItemView.templates.hdaSummary( modelData ); + }, + + // ................................................................................ primary actions + _render_primaryActionButtons : function( buttonRenderingFuncs ){ + var primaryActionButtons = $( '<div/>' ), + view = this; + _.each( buttonRenderingFuncs, function( fn ){ + primaryActionButtons.append( fn.call( view ) ); + }); + return primaryActionButtons; + }, + + _render_downloadButton : function(){ + // return either: a single download icon-button (if there are no meta files) + // or a popupmenu with links to download assoc. meta files (if there are meta files) + + // don't show anything if the data's been purged + if( this.model.get( 'purged' ) ){ return null; } + + var downloadLink = linkHTMLTemplate({ + title : 'Download', + href : this.model.get( 'download_url' ), + classes : [ 'icon-button', 'tooltip', 'disk' ] + }); + + // if no metafiles, return only the main download link + var download_meta_urls = this.model.get( 'download_meta_urls' ); + if( !download_meta_urls ){ + return downloadLink; + } + + // build the popupmenu for downloading main, meta files + var popupmenu = $( '<div popupmenu="dataset-' + this.model.get( 'id' ) + '-popup"></div>' ); + popupmenu.append( linkHTMLTemplate({ + text : 'Download Dataset', + title : 'Download', + href : this.model.get( 'download_url' ), + classes : [ 'icon-button', 'tooltip', 'disk' ] + })); + popupmenu.append( '<a>Additional Files</a>' ); + for( file_type in download_meta_urls ){ + popupmenu.append( linkHTMLTemplate({ + text : 'Download ' + file_type, + href : download_meta_urls[ file_type ], + classes : [ 'action-button' ] + })); + } + var menuButton = $( ( '<div style="float:left;" class="menubutton split popup"' + + ' id="dataset-${dataset_id}-popup"></div>' ) ); + menuButton.append( downloadLink ); + popupmenu.append( menuButton ); + return popupmenu; + }, + + //NOTE: button renderers have the side effect of caching their IconButtonViews to this view + _render_errButton : function(){ + if( ( this.model.get( 'state' ) !== HistoryItem.STATES.ERROR ) + || ( !this.model.get( 'for_editing' ) ) ){ return null; } + + this.errButton = new IconButtonView({ model : new IconButton({ + title : 'View or report this error', + href : this.model.get( 'report_error_url' ), + target : 'galaxy_main', + icon_class : 'bug' + })}); + return this.errButton.render().$el; + }, + + _render_showParamsButton : function(){ + // gen. safe to show in all cases + this.showParamsButton = new IconButtonView({ model : new IconButton({ + title : 'View details', + href : this.model.get( 'show_params_url' ), + target : 'galaxy_main', + icon_class : 'information' + }) }); + return this.showParamsButton.render().$el; + }, + + _render_rerunButton : function(){ + if( !this.model.get( 'for_editing' ) ){ return null; } + this.rerunButton = new IconButtonView({ model : new IconButton({ + title : 'Run this job again', + href : this.model.get( 'rerun_url' ), + target : 'galaxy_main', + icon_class : 'arrow-circle' + }) }); + return this.rerunButton.render().$el; + }, + + _render_tracksterButton : function(){ + var trackster_urls = this.model.get( 'trackster_urls' ); + if( !( this.model.hasData() ) + || !( this.model.get( 'for_editing' ) ) + || !( trackster_urls ) ){ return null; } + + this.tracksterButton = new IconButtonView({ model : new IconButton({ + title : 'View in Trackster', + icon_class : 'chart_curve' + })}); + this.errButton.render(); //?? needed? + this.errButton.$el.addClass( 'trackster-add' ).attr({ + 'data-url' : trackster_urls[ 'data-url' ], + 'action-url': trackster_urls[ 'action-url' ], + 'new-url' : trackster_urls[ 'new-url' ] + }); + return this.errButton.$el; + }, + + // ................................................................................ secondary actions + _render_secondaryActionButtons : function( buttonRenderingFuncs ){ + // move to the right (same level as primary) + var secondaryActionButtons = $( '<div style="float: right;"></div>' ), + view = this; + _.each( buttonRenderingFuncs, function( fn ){ + secondaryActionButtons.append( fn.call( view ) ); + }); + return secondaryActionButtons; + }, + + _render_tagButton : function(){ + if( !( this.model.hasData() ) + || !( this.model.get( 'for_editing' ) ) + || ( !this.model.get( 'retag_url' ) ) ){ return null; } + + this.tagButton = new IconButtonView({ model : new IconButton({ + title : 'Edit dataset tags', + target : 'galaxy_main', + href : this.model.get( 'retag_url' ), + icon_class : 'tags' + })}); + return this.tagButton.render().$el; + }, + + _render_annotateButton : function(){ + if( !( this.model.hasData() ) + || !( this.model.get( 'for_editing' ) ) + || ( !this.model.get( 'annotate_url' ) ) ){ return null; } + + this.annotateButton = new IconButtonView({ model : new IconButton({ + title : 'Edit dataset annotation', + target : 'galaxy_main', + href : this.model.get( 'annotate_url' ), + icon_class : 'annotate' + })}); + return this.annotateButton.render().$el; + }, + + // ................................................................................ other elements + _render_tagArea : function(){ + if( this.model.get( 'retag_url' ) ){ return null; } + //TODO: move to mvc/tags.js + return $( HistoryItemView.templates.tagArea( this.model.toJSON() ) ); + }, + + _render_annotationArea : function(){ + if( !this.model.get( 'annotate_url' ) ){ return null; } + //TODO: move to mvc/annotations.js + return $( HistoryItemView.templates.annotationArea( this.model.toJSON() ) ); + }, + + _render_displayApps : function(){ + if( !this.model.get( 'display_apps' ) ){ return null; } + var displayApps = this.model.get( 'displayApps' ), + displayAppsDiv = $( '<div/>' ), + displayAppSpan = $( '<span/>' ); + + this.log( this + 'displayApps:', displayApps ); + ////TODO: grrr...somethings not in the right scope here + //for( app_name in displayApps ){ + // //TODO: to template + // var display_app = displayApps[ app_name ], + // display_app_HTML = app_name + ' '; + // for( location_name in display_app ){ + // display_app_HTML += linkHTMLTemplate({ + // text : location_name, + // href : display_app[ location_name ].url, + // target : display_app[ location_name ].target + // }) + ' '; + // } + // display_app_span.append( display_app_HTML ); + //} + //displayAppsDiv.append( display_app_span ); + + //displayAppsDiv.append( '<br />' ); + + //var display_appsDiv = $( '<div/>' ); + //if( this.model.get( 'display_apps' ) ){ + // + // var display_apps = this.model.get( 'display_apps' ), + // display_app_span = $( '<span/>' ); + // + // //TODO: grrr...somethings not in the right scope here + // for( app_name in display_apps ){ + // //TODO: to template + // var display_app = display_apps[ app_name ], + // display_app_HTML = app_name + ' '; + // for( location_name in display_app ){ + // display_app_HTML += linkHTMLTemplate({ + // text : location_name, + // href : display_app[ location_name ].url, + // target : display_app[ location_name ].target + // }) + ' '; + // } + // display_app_span.append( display_app_HTML ); + // } + // display_appsDiv.append( display_app_span ); + //} + ////display_appsDiv.append( '<br />' ); + //parent.append( display_appsDiv ); + return displayAppsDiv; + }, + + _render_peek : function(){ + if( !this.model.get( 'peek' ) ){ return null; } + return $( '<div/>' ).append( + $( '<pre/>' ) + .attr( 'id', 'peek' + this.model.get( 'id' ) ) + .addClass( 'peek' ) + .append( this.model.get( 'peek' ) ) + ); + }, + + // ................................................................................ state body renderers // _render_body fns for the various states _render_body_not_viewable : function( parent ){ + //TODO: revisit - still showing display, edit, delete (as common) - that CAN'T be right parent.append( $( '<div>You do not have permission to view dataset.</div>' ) ); }, @@ -338,12 +575,18 @@ _render_body_queued : function( parent ){ parent.append( $( '<div>Job is waiting to run.</div>' ) ); - parent.append( this._render_showParamsAndRerun() ); + parent.append( this._render_primaryActionButtons([ + this._render_showParamsButton, + this._render_rerunButton + ])); }, _render_body_running : function( parent ){ parent.append( '<div>Job is currently running.</div>' ); - parent.append( this._render_showParamsAndRerun() ); + parent.append( this._render_primaryActionButtons([ + this._render_showParamsButton, + this._render_rerunButton + ])); }, _render_body_error : function( parent ){ @@ -352,31 +595,20 @@ } parent.append( ( 'An error occurred running this job: ' + '<i>' + $.trim( this.model.get( 'misc_info' ) ) + '</i>' ) ); - - var actionBtnDiv = $( this._render_showParamsAndRerun() ); - // bug report button - //NOTE: these are shown _before_ info, rerun so use _prepend_ - if( this.model.get( 'for_editing' ) ){ - //TODO??: save to view 'this.errButton' - this.errButton = new IconButtonView({ model : new IconButton({ - title : 'View or report this error', - href : this.model.get( 'report_error_url' ), - target : 'galaxy_main', - icon_class : 'bug' - })}); - actionBtnDiv.prepend( this.errButton.render().$el ); - } - if( this.model.hasData() ){ - //TODO: render_download_links( data, dataset_id ) - // download dropdown - actionBtnDiv.prepend( this._render_downloadLinks() ); - } - parent.append( actionBtnDiv ); + parent.append( this._render_primaryActionButtons([ + this._render_downloadButton, + this._render_errButton, + this._render_showParamsButton, + this._render_rerunButton + ])); }, _render_body_discarded : function( parent ){ parent.append( '<div>The job creating this dataset was cancelled before completion.</div>' ); - parent.append( this._render_showParamsAndRerun() ); + parent.append( this._render_primaryActionButtons([ + this._render_showParamsButton, + this._render_rerunButton + ])); }, _render_body_setting_metadata : function( parent ){ @@ -387,150 +619,46 @@ //TODO: replace i with dataset-misc-info class //?? why are we showing the file size when we know it's zero?? parent.append( $( '<div>No data: <i>' + this.model.get( 'misc_blurb' ) + '</i></div>' ) ); - parent.append( this._render_showParamsAndRerun() ); + parent.append( this._render_primaryActionButtons([ + this._render_showParamsButton, + this._render_rerunButton + ])); }, _render_body_failed_metadata : function( parent ){ - // add a message box about the failure at the top of the body, then... - var warningMsgText = 'An error occurred setting the metadata for this dataset.'; - if( this.model.isEditable() ){ - var editLink = linkHTMLTemplate({ - text : 'set it manually or retry auto-detection', - href : this.model.get( 'edit_url' ), - target : 'galaxy_main' - }); - warningMsgText += 'You may be able to ' + editLink + '.'; - } - parent.append( $( HistoryItemView.templates.warningMsg({ warning: warningMsgText }) ) ); - - //...render the remaining body as STATES.OK (only diff between these states is the box above) + //TODO: the css for this box is broken (unlike the others) + // add a message box about the failure at the top of the body... + parent.append( $( HistoryItemView.templates.failedMetadata( this.model.toJSON() ) ) ); + //...then render the remaining body as STATES.OK (only diff between these states is the box above) this._render_body_ok( parent ); }, _render_body_ok : function( parent ){ // most common state renderer and the most complicated - - // build the summary info (using template and dbkey data) parent.append( this._render_hdaSummary() ); - if( this.model.get( 'misc_info' ) ){ - parent.append( $( '<div class="info">Info: ' + this.model.get( 'misc_info' ) + '</div>' ) ); - } + parent.append( this._render_primaryActionButtons([ + this._render_downloadButton, + this._render_errButton, + this._render_showParamsButton, + this._render_rerunButton + ])); + parent.append( this._render_secondaryActionButtons([ + this._render_tagButton, + this._render_annotateButton + ])); + parent.append( '<div class="clear"/>' ); - // hasData - if( this.model.hasData() ){ - var actionBtnDiv = $( '<div/>' ); - - // render download links, show_params - actionBtnDiv.append( this._render_downloadLinks() ); - actionBtnDiv.append( $( linkHTMLTemplate({ - title : 'View details', - href : this.model.get( 'show_params_url' ), - target : 'galaxy_main', - classes : [ 'icon-button', 'tooltip', 'information' ] - }))); - - // if for_editing - if( this.model.get( 'for_editing' ) ){ - - // rerun - actionBtnDiv.append( $( linkHTMLTemplate({ - title : 'Run this job again', - href : this.model.get( 'rerun_url' ), - target : 'galaxy_main', - classes : [ 'icon-button', 'tooltip', 'arrow-circle' ] - }))); - - if( this.model.get( 'trackster_urls' ) ){ - // link to trackster - var trackster_urls = this.model.get( 'trackster_urls' ); - actionBtnDiv.append( $( linkHTMLTemplate({ - title : 'View in Trackster', - href : "javascript:void(0)", - classes : [ 'icon-button', 'tooltip', 'chart_curve', 'trackster-add' ], - // prob just _.extend - 'data-url' : trackster_urls[ 'data-url' ], - 'action-url': trackster_urls[ 'action-url' ], - 'new-url' : trackster_urls[ 'new-url' ] - }))); - } - - // if trans.user - if( this.model.get( 'retag_url' ) && this.model.get( 'annotate_url' ) ){ - // tag, annotate buttons - //TODO: move to tag, Annot MV - var tagsAnnotationsBtns = $( '<div style="float: right;"></div>' ); - tagsAnnotationsBtns.append( $( linkHTMLTemplate({ - title : 'Edit dataset tags', - target : 'galaxy_main', - href : this.model.get( 'retag_url' ), - classes : [ 'icon-button', 'tooltip', 'tags' ] - }))); - tagsAnnotationsBtns.append( $( linkHTMLTemplate({ - title : 'Edit dataset annotation', - target : 'galaxy_main', - href : this.model.get( 'annotation_url' ), - classes : [ 'icon-button', 'tooltip', 'annotate' ] - }))); - actionBtnDiv.append( tagsAnnotationsBtns ); - actionBtnDiv.append( '<div style="clear: both"></div>' ); - - // tag/annot display areas - this.tagArea = $( '<div class="tag-area" style="display: none">' ); - this.tagArea.append( '<strong>Tags:</strong>' ); - this.tagElt = $( '<div class="tag-elt"></div>' ); - actionBtnDiv.append( this.tagArea.append( this.tagElt ) ); - - var annotationArea = $( ( '<div id="${dataset_id}-annotation-area"' - + ' class="annotation-area" style="display: none">' ) ); - this.annotationArea = annotationArea; - annotationArea.append( '<strong>Annotation:</strong>' ); - this.annotationElem = $( '<div id="' + this.model.get( 'id' ) + '-annotation-elt" ' - + 'style="margin: 1px 0px 1px 0px" class="annotation-elt tooltip editable-text" ' - + 'title="Edit dataset annotation"></div>' ); - annotationArea.append( this.annotationElem ); - actionBtnDiv.append( annotationArea ); - } - } - // clear div - actionBtnDiv.append( '<div style="clear: both;"></div>' ); - parent.append( actionBtnDiv ); - - var display_appsDiv = $( '<div/>' ); - if( this.model.get( 'display_apps' ) ){ - var display_apps = this.model.get( 'display_apps' ), - display_app_span = $( '<span/>' ); - - //TODO: grrr...somethings not in the right scope here - for( app_name in display_apps ){ - //TODO: to template - var display_app = display_apps[ app_name ], - display_app_HTML = app_name + ' '; - for( location_name in display_app ){ - display_app_HTML += linkHTMLTemplate({ - text : location_name, - href : display_app[ location_name ].url, - target : display_app[ location_name ].target - }) + ' '; - } - display_app_span.append( display_app_HTML ); - } - display_appsDiv.append( display_app_span ); - } - //display_appsDiv.append( '<br />' ); - parent.append( display_appsDiv ); + parent.append( this._render_tagArea() ); + parent.append( this._render_annotationArea() ); - } else if( this.model.get( 'for_editing' ) ){ - parent.append( this._render_showParamsAndRerun() ); - } - + parent.append( this._render_displayApps() ); parent.append( this._render_peek() ); }, _render_body : function(){ //this.log( this + '_render_body' ); - var state = this.model.get( 'state' ), - for_editing = this.model.get( 'for_editing' ); + var state = this.model.get( 'state' ); //this.log( 'state:', state, 'for_editing', for_editing ); //TODO: incorrect id (encoded - use hid?) @@ -539,6 +667,7 @@ .addClass( 'historyItemBody' ) .attr( 'style', 'display: block' ); + //TODO: not a fan of this switch( state ){ case HistoryItem.STATES.NOT_VIEWABLE : this._render_body_not_viewable( body ); @@ -582,92 +711,6 @@ return body; }, - _render_hdaSummary : function(){ - var modelData = this.model.toJSON(); - - // if there's no dbkey and it's editable : pass a flag to the template to render a link to editing in the '?' - if( this.model.get( 'metadata_dbkey' ) === '?' - && this.model.isEditable() ){ - _.extend( modelData, { dbkey_unknown_and_editable : true }); - } - return HistoryItemView.templates.hdaSummary( modelData ); - }, - - _render_showParamsAndRerun : function(){ - //TODO??: generalize to _render_actionButtons, pass in list of 'buttons' to render, default to these two - var actionBtnDiv = $( '<div/>' ); - - this.showParamsButton = new IconButtonView({ model : new IconButton({ - title : 'View details', - href : this.model.get( 'show_params_url' ), - target : 'galaxy_main', - icon_class : 'information' - }) }); - actionBtnDiv.append( this.showParamsButton.render().$el ); - - if( this.model.get( 'for_editing' ) ){ - this.rerunButton = new IconButtonView({ model : new IconButton({ - title : 'Run this job again', - href : this.model.get( 'rerun_url' ), - target : 'galaxy_main', - icon_class : 'arrow-circle' - }) }); - } - return actionBtnDiv; - }, - - _render_downloadLinks : function(){ - // return either: a single download icon-button (if there are no meta files) - // or a popupmenu with links to download assoc. meta files (if there are meta files) - - // don't show anything if the data's been purged - if( this.model.get( 'purged' ) ){ return null; } - - var downloadLink = linkHTMLTemplate({ - title : 'Download', - href : this.model.get( 'download_url' ), - classes : [ 'icon-button', 'tooltip', 'disk' ] - }); - - // if no metafiles, return only the main download link - var download_meta_urls = this.model.get( 'download_meta_urls' ); - if( !download_meta_urls ){ - return downloadLink; - } - - // build the popupmenu for downloading main, meta files - var popupmenu = $( '<div popupmenu="dataset-' + this.model.get( 'id' ) + '-popup"></div>' ); - popupmenu.append( linkHTMLTemplate({ - text : 'Download Dataset', - title : 'Download', - href : this.model.get( 'download_url' ), - classes : [ 'icon-button', 'tooltip', 'disk' ] - })); - popupmenu.append( '<a>Additional Files</a>' ); - for( file_type in download_meta_urls ){ - popupmenu.append( linkHTMLTemplate({ - text : 'Download ' + file_type, - href : download_meta_urls[ file_type ], - classes : [ 'action-button' ] - })); - } - var menuButton = $( ( '<div style="float:left;" class="menubutton split popup"' - + ' id="dataset-${dataset_id}-popup"></div>' ) ); - menuButton.append( downloadLink ); - popupmenu.append( menuButton ); - return popupmenu; - }, - - _render_peek : function(){ - if( !this.model.get( 'peek' ) ){ return null; } - return $( '<div/>' ).append( - $( '<pre/>' ) - .attr( 'id', 'peek' + this.model.get( 'id' ) ) - .addClass( 'peek' ) - .append( this.model.get( 'peek' ) ) - ); - }, - // ................................................................................ EVENTS events : { 'click .historyItemTitle' : 'toggleBodyVisibility', @@ -677,10 +720,11 @@ // ................................................................................ STATE CHANGES / MANIPULATION loadAndDisplayTags : function( event ){ + //BUG: broken with latest //TODO: this is a drop in from history.mako - should use MV as well - this.log( this, '.loadAndDisplayTags', event ); - var tagArea = this.tagArea; - var tagElt = this.tagElt; + this.log( this + '.loadAndDisplayTags', event ); + var tagArea = this.$el.find( '.tag-area' ), + tagElt = tagArea.find( '.tag-elt' ); // Show or hide tag area; if showing tag area and it's empty, fill it. if( tagArea.is( ":hidden" ) ){ @@ -688,9 +732,8 @@ // Need to fill tag element. $.ajax({ url: this.model.get( 'ajax_get_tag_url' ), - error: function() { alert( "Tagging failed" ) }, + error: function() { alert( "Tagging failed" ); }, success: function(tag_elt_html) { - this.log( 'tag_elt_html:', tag_elt_html ); tagElt.html(tag_elt_html); tagElt.find(".tooltip").tooltip(); tagArea.slideDown("fast"); @@ -709,21 +752,20 @@ }, loadAndDisplayAnnotation : function( event ){ + //BUG: broken with latest //TODO: this is a drop in from history.mako - should use MV as well - this.log( this, '.loadAndDisplayAnnotation', event ); - var annotationArea = this.annotationArea, - annotationElem = this.annotationElem, + this.log( this + '.loadAndDisplayAnnotation', event ); + var annotationArea = this.$el.find( '.annotation-area' ), + annotationElem = annotationArea.find( '.annotation-elt' ), setAnnotationUrl = this.model.get( 'ajax_set_annotation_url' ); // Show or hide annotation area; if showing annotation area and it's empty, fill it. - this.log( 'annotationArea hidden:', annotationArea.is( ":hidden" ) ); - this.log( 'annotationElem html:', annotationElem.html() ); if ( annotationArea.is( ":hidden" ) ){ if( !annotationElem.html() ){ // Need to fill annotation element. $.ajax({ url: this.model.get( 'ajax_get_annotation_url' ), - error: function(){ alert( "Annotations failed" ) }, + error: function(){ alert( "Annotations failed" ); }, success: function( htmlFromAjax ){ if( htmlFromAjax === "" ){ htmlFromAjax = "<em>Describe or add notes to dataset</em>"; @@ -767,12 +809,15 @@ //HistoryItemView.templates = InDomTemplateLoader.getTemplates({ HistoryItemView.templates = CompiledTemplateLoader.getTemplates({ 'common-templates.html' : { - warningMsg : 'template-warningmessagesmall', + warningMsg : 'template-warningmessagesmall' }, 'history-templates.html' : { messages : 'template-history-warning-messages', titleLink : 'template-history-titleLink', - hdaSummary : 'template-history-hdaSummary' + hdaSummary : 'template-history-hdaSummary', + failedMetadata : 'template-history-failedMetaData', + tagArea : 'template-history-tagArea', + annotationArea : 'template-history-annotationArea' } }); @@ -936,7 +981,7 @@ metadata_dbkey : '?', metadata_sequences : 0, misc_blurb : '215.8 MB', - misc_info : 'uploaded fastq file', + misc_info : 'uploaded fastq file (misc_info)', model_class : 'HistoryDatasetAssociation', download_url : '', state : 'ok', @@ -953,13 +998,15 @@ //can_edit : true, //can_edit : false, + accessible : true, + //TODO: move into model functions (build there (and cache?)) //!! be careful with adding these accrd. to permissions //!! IOW, don't send them via template/API if the user doesn't have perms to use //!! (even if they don't show up) - undelete_url : 'example.com/undelete', - purge_url : 'example.com/purge', - unhide_url : 'example.com/unhide', + undelete_url : '', + purge_url : '', + unhide_url : '', display_url : 'example.com/display', edit_url : 'example.com/edit', @@ -986,19 +1033,25 @@ }; _.extend( mockHistory.data, { + notAccessible : + _.extend( _.clone( mockHistory.data.template ), + { accessible : false }), + //deleted, purged, visible deleted : _.extend( _.clone( mockHistory.data.template ), - { deleted : true }), - //purged : - // _.extend( _.clone( mockHistory.data.template ), - // { purged : true, deleted : true }), + { deleted : true, + delete_url : '', + purge_url : 'example.com/purge', + undelete_url : 'example.com/undelete' }), purgedNotDeleted : _.extend( _.clone( mockHistory.data.template ), - { purged : true }), + { purged : true, + delete_url : '' }), notvisible : _.extend( _.clone( mockHistory.data.template ), - { visible : false }), + { visible : false, + unhide_url : 'example.com/unhide' }), hasDisplayApps : _.extend( _.clone( mockHistory.data.template ), diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/mvc/ui.js --- a/static/scripts/mvc/ui.js +++ b/static/scripts/mvc/ui.js @@ -36,7 +36,6 @@ */ var IconButtonView = Backbone.View.extend({ - initialize : function(){ // better rendering this way (for me anyway) this.model.attributes.tooltip_config = { placement : 'bottom' }; @@ -62,7 +61,6 @@ }, click : function( event ){ - console.debug( 'click event' ); // if on_click pass to that function if( this.model.attributes.on_click ){ this.model.attributes.on_click( event ); diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/common-templates.html --- a/static/scripts/templates/common-templates.html +++ b/static/scripts/templates/common-templates.html @@ -48,3 +48,10 @@ return buffer; }); </script> + +<script type="text/template" class="template-common" id="template-iconButton"> +{{! alternate template-based icon-button }} +{{> iconButton this}} +</script> + + diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/compile_templates.py --- a/static/scripts/templates/compile_templates.py +++ b/static/scripts/templates/compile_templates.py @@ -39,6 +39,7 @@ # ------------------------------------------------------------------------------ TODO = """ +remove intermediate, handlebars step of multi->handlebars->compiled/.js (if handlebars does stdin) """ import sys @@ -273,4 +274,4 @@ ( options, args ) = optparser.parse_args() sys.exit( main( options, args ) ) - \ No newline at end of file + diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/compiled/template-history-annotationArea.js --- /dev/null +++ b/static/scripts/templates/compiled/template-history-annotationArea.js @@ -0,0 +1,18 @@ +(function() { + var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; +templates['template-history-annotationArea'] = template(function (Handlebars,depth0,helpers,partials,data) { + helpers = helpers || Handlebars.helpers; + var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression; + + + buffer += "\n<div id=\""; + foundHelper = helpers.id; + if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } + buffer += escapeExpression(stack1) + "-annotation-area\" class=\"annotation-area\" style=\"display: none;\">\n <strong>Annotation:</strong>\n <div id=\""; + foundHelper = helpers.id; + if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } + buffer += escapeExpression(stack1) + "-anotation-elt\" class=\"annotation-elt tooltip editable-text\"\n style=\"margin: 1px 0px 1px 0px\" title=\"Edit dataset annotation\">\n </div>\n</div>"; + return buffer;}); +})(); \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/compiled/template-history-failedMetaData.js --- /dev/null +++ b/static/scripts/templates/compiled/template-history-failedMetaData.js @@ -0,0 +1,23 @@ +(function() { + var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; +templates['template-history-failedMetaData'] = template(function (Handlebars,depth0,helpers,partials,data) { + helpers = helpers || Handlebars.helpers; + var stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; + +function program1(depth0,data) { + + var buffer = "", stack1, foundHelper; + buffer += "\nAn error occurred setting the metadata for this dataset.\nYou may be able to <a href=\""; + foundHelper = helpers.edit_url; + if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } + else { stack1 = depth0.edit_url; stack1 = typeof stack1 === functionType ? stack1() : stack1; } + buffer += escapeExpression(stack1) + "\" target=\"galaxy_main\">set it manually or retry auto-detection</a>.\n"; + return buffer;} + + foundHelper = helpers.warningmessagesmall; + if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } + else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1() : stack1; } + if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } + if(stack1 || stack1 === 0) { return stack1; } + else { return ''; }}); +})(); \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/compiled/template-history-hdaSummary.js --- a/static/scripts/templates/compiled/template-history-hdaSummary.js +++ b/static/scripts/templates/compiled/template-history-hdaSummary.js @@ -7,7 +7,7 @@ function program1(depth0,data) { var buffer = "", stack1, foundHelper; - buffer += "\n <a href=\""; + buffer += "\n <a href=\""; foundHelper = helpers.edit_url; if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } else { stack1 = depth0.edit_url; stack1 = typeof stack1 === functionType ? stack1() : stack1; } @@ -15,13 +15,13 @@ foundHelper = helpers.metadata_dbkey; if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</a>\n"; + buffer += escapeExpression(stack1) + "</a>\n "; return buffer;} function program3(depth0,data) { var buffer = "", stack1, foundHelper; - buffer += "\n <span class=\""; + buffer += "\n <span class=\""; foundHelper = helpers.metadata_dbkey; if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1() : stack1; } @@ -29,13 +29,24 @@ foundHelper = helpers.metadata_dbkey; if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</span>\n"; + buffer += escapeExpression(stack1) + "</span>\n "; return buffer;} +function program5(depth0,data) { + + var buffer = "", stack1, foundHelper; + buffer += "\n<div class=\"hda-info\">"; + foundHelper = helpers.misc_info; + if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } + else { stack1 = depth0.misc_info; stack1 = typeof stack1 === functionType ? stack1() : stack1; } + buffer += escapeExpression(stack1) + "</div>\n"; + return buffer;} + + buffer += "<div class=\"hda-summary\">\n "; foundHelper = helpers.misc_blurb; if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } else { stack1 = depth0.misc_blurb; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "<br />\nformat: <span class=\""; + buffer += escapeExpression(stack1) + "<br />\n format: <span class=\""; foundHelper = helpers.data_type; if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } else { stack1 = depth0.data_type; stack1 = typeof stack1 === functionType ? stack1() : stack1; } @@ -43,9 +54,13 @@ foundHelper = helpers.data_type; if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } else { stack1 = depth0.data_type; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</span>,\ndatabase:\n"; + buffer += escapeExpression(stack1) + "</span>,\n database:\n "; stack1 = depth0.dbkey_unknown_and_editable; stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(3, program3, data),fn:self.program(1, program1, data)}); if(stack1 || stack1 === 0) { buffer += stack1; } + buffer += "\n</div>\n"; + stack1 = depth0.misc_info; + stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(5, program5, data)}); + if(stack1 || stack1 === 0) { buffer += stack1; } return buffer;}); })(); \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/compiled/template-history-tagArea.js --- /dev/null +++ b/static/scripts/templates/compiled/template-history-tagArea.js @@ -0,0 +1,10 @@ +(function() { + var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; +templates['template-history-tagArea'] = template(function (Handlebars,depth0,helpers,partials,data) { + helpers = helpers || Handlebars.helpers; + var buffer = ""; + + + buffer += "\n<div class=\"tag-area\" style=\"display: none;\">\n <strong>Tags:</strong>\n <div class=\"tag-elt\">\n </div>\n</div>"; + return buffer;}); +})(); \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/compiled/template-history-warning-messages.js --- a/static/scripts/templates/compiled/template-history-warning-messages.js +++ b/static/scripts/templates/compiled/template-history-warning-messages.js @@ -80,7 +80,7 @@ var buffer = "", stack1; buffer += "\n This dataset has been hidden.\n "; - stack1 = depth0.undelete_url; + stack1 = depth0.unhide_url; stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(11, program11, data)}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n"; diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/compiled/template-iconButton.js --- /dev/null +++ b/static/scripts/templates/compiled/template-iconButton.js @@ -0,0 +1,12 @@ +(function() { + var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; +templates['template-iconButton'] = template(function (Handlebars,depth0,helpers,partials,data) { + helpers = helpers || Handlebars.helpers; partials = partials || Handlebars.partials; + var buffer = "", stack1, self=this; + + + buffer += "\n"; + stack1 = self.invokePartial(partials.iconButton, 'iconButton', depth0, helpers, partials);; + if(stack1 || stack1 === 0) { buffer += stack1; } + return buffer;}); +})(); \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/history-templates.html --- a/static/scripts/templates/history-templates.html +++ b/static/scripts/templates/history-templates.html @@ -17,7 +17,7 @@ {{#unless visible}}{{#warningmessagesmall}} This dataset has been hidden. - {{#if undelete_url}} + {{#if unhide_url}} Click <a href="{{ unhide_url }}" class="historyItemUnhide" id="historyItemUnhider-{{ id }}" target="galaxy_history">here</a> to unhide it {{/if}} @@ -29,12 +29,44 @@ </script><script type="text/template" class="template-history" id="template-history-hdaSummary"> -{{ misc_blurb }}<br /> -format: <span class="{{ data_type }}">{{ data_type }}</span>, -database: -{{#if dbkey_unknown_and_editable }} - <a href="{{ edit_url }}" target="galaxy_main">{{ metadata_dbkey }}</a> -{{else}} - <span class="{{ metadata_dbkey }}">{{ metadata_dbkey }}</span> +<div class="hda-summary"> + {{ misc_blurb }}<br /> + format: <span class="{{ data_type }}">{{ data_type }}</span>, + database: + {{#if dbkey_unknown_and_editable }} + <a href="{{ edit_url }}" target="galaxy_main">{{ metadata_dbkey }}</a> + {{else}} + <span class="{{ metadata_dbkey }}">{{ metadata_dbkey }}</span> + {{/if}} +</div> +{{#if misc_info}} +<div class="hda-info">{{ misc_info }}</div> {{/if}} </script> + +<script type="text/template" class="template-history" id="template-history-failedMetaData"> +{{#warningmessagesmall}} +An error occurred setting the metadata for this dataset. +You may be able to <a href="{{ edit_url }}" target="galaxy_main">set it manually or retry auto-detection</a>. +{{/warningmessagesmall}} +</script> + +<script type="text/template" class="template-history" id="template-history-tagArea"> +{{! TODO: move to mvc/tag.js templates }} +<div class="tag-area" style="display: none;"> + <strong>Tags:</strong> + <div class="tag-elt"> + </div> +</div> +</script> + +<script type="text/template" class="template-history" id="template-history-annotationArea"> +{{! TODO: move to mvc/annotations.js templates, editable-text }} +<div id="{{ id }}-annotation-area" class="annotation-area" style="display: none;"> + <strong>Annotation:</strong> + <div id="{{ id }}-anotation-elt" class="annotation-elt tooltip editable-text" + style="margin: 1px 0px 1px 0px" title="Edit dataset annotation"> + </div> +</div> +</script> + diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/template-history-annotationArea.handlebars --- /dev/null +++ b/static/scripts/templates/template-history-annotationArea.handlebars @@ -0,0 +1,7 @@ +{{! TODO: move to mvc/annotations.js templates, editable-text }} +<div id="{{ id }}-annotation-area" class="annotation-area" style="display: none;"> + <strong>Annotation:</strong> + <div id="{{ id }}-anotation-elt" class="annotation-elt tooltip editable-text" + style="margin: 1px 0px 1px 0px" title="Edit dataset annotation"> + </div> +</div> \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/template-history-failedMetaData.handlebars --- /dev/null +++ b/static/scripts/templates/template-history-failedMetaData.handlebars @@ -0,0 +1,4 @@ +{{#warningmessagesmall}} +An error occurred setting the metadata for this dataset. +You may be able to <a href="{{ edit_url }}" target="galaxy_main">set it manually or retry auto-detection</a>. +{{/warningmessagesmall}} \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/template-history-hdaSummary.handlebars --- a/static/scripts/templates/template-history-hdaSummary.handlebars +++ b/static/scripts/templates/template-history-hdaSummary.handlebars @@ -1,8 +1,13 @@ -{{ misc_blurb }}<br /> -format: <span class="{{ data_type }}">{{ data_type }}</span>, -database: -{{#if dbkey_unknown_and_editable }} - <a href="{{ edit_url }}" target="galaxy_main">{{ metadata_dbkey }}</a> -{{else}} - <span class="{{ metadata_dbkey }}">{{ metadata_dbkey }}</span> +<div class="hda-summary"> + {{ misc_blurb }}<br /> + format: <span class="{{ data_type }}">{{ data_type }}</span>, + database: + {{#if dbkey_unknown_and_editable }} + <a href="{{ edit_url }}" target="galaxy_main">{{ metadata_dbkey }}</a> + {{else}} + <span class="{{ metadata_dbkey }}">{{ metadata_dbkey }}</span> + {{/if}} +</div> +{{#if misc_info}} +<div class="hda-info">{{ misc_info }}</div> {{/if}} \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/template-history-tagArea.handlebars --- /dev/null +++ b/static/scripts/templates/template-history-tagArea.handlebars @@ -0,0 +1,6 @@ +{{! TODO: move to mvc/tag.js templates }} +<div class="tag-area" style="display: none;"> + <strong>Tags:</strong> + <div class="tag-elt"> + </div> +</div> \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/template-history-warning-messages.handlebars --- a/static/scripts/templates/template-history-warning-messages.handlebars +++ b/static/scripts/templates/template-history-warning-messages.handlebars @@ -16,7 +16,7 @@ {{#unless visible}}{{#warningmessagesmall}} This dataset has been hidden. - {{#if undelete_url}} + {{#if unhide_url}} Click <a href="{{ unhide_url }}" class="historyItemUnhide" id="historyItemUnhider-{{ id }}" target="galaxy_history">here</a> to unhide it {{/if}} diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d static/scripts/templates/template-iconButton.handlebars --- /dev/null +++ b/static/scripts/templates/template-iconButton.handlebars @@ -0,0 +1,2 @@ +{{! alternate template-based icon-button }} +{{> iconButton this}} \ No newline at end of file diff -r 5088185a5bca723d5e58bb6672327e0310f86fbc -r 0bb0a2d4bf3cd19b822394f36b36f2d13c02339d templates/root/alternate_history.mako --- a/templates/root/alternate_history.mako +++ b/templates/root/alternate_history.mako @@ -302,7 +302,10 @@ "template-history-warning-messages", "template-history-titleLink", - "template-history-hdaSummary" + "template-history-hdaSummary", + "template-history-failedMetadata", + "template-history-tagArea", + "template-history-annotationArea" )} ## if using in-dom templates they need to go here (before the Backbone classes are defined) @@ -315,6 +318,53 @@ "mvc/history" ##"mvc/tags", "mvc/annotations" )} + + <script type="text/javascript"> + GalaxyLocalization.setLocalizedString( ${ create_localization_json( get_page_localized_strings() ) } ); + // add needed controller urls to GalaxyPaths + galaxy_paths.set( 'dataset_path', "${h.url_for( controller='dataset' )}" ) + + // Init. on document load. + var pageData = ${context_to_js()}; + + //USE_MOCK_DATA = true; + USE_CURR_DATA = true; + + // on ready + $(function(){ + if( console && console.debug ){ console.debug( 'using backbone.js in history panel' ); } + + if( window.USE_MOCK_DATA ){ + if( console && console.debug ){ console.debug( '\t using mock data' ); } + createMockHistoryData(); + return; + + } else if ( window.USE_CURR_DATA ){ + if( console && console.debug ){ console.debug( '\t using current history data' ); } + glx_history = new History( pageData.history ).loadDatasetsAsHistoryItems( pageData.hdas ); + glx_history_view = new HistoryView({ model: glx_history }); + glx_history_view.render(); + + hi = glx_history.items.at( 0 ); + hi_view = new HistoryItemView({ model: hi }); + $( 'body' ).append( hi_view.render() ); + return; + } + + // sandbox here + // testing iconButton + //ibm = new IconButton({ + // icon_class : 'information', + // on_click : function( event ){ console.debug( 'blerg' ); }, + //}); + //mockObj = { one : 1 }; + //ibv = new IconButtonView({ model : ibm }); + //new_click = function( event ){ console.debug( mockObj.one ); } + //$( 'body' ).append( ibv.render().$el ); + + }); + </script> + </%def><%def name="stylesheets()"> @@ -358,41 +408,4 @@ ${_('Galaxy History')} </%def> -<script type="text/javascript"> - GalaxyLocalization.setLocalizedString( ${ create_localization_json( get_page_localized_strings() ) } ); - // add needed controller urls to GalaxyPaths - galaxy_paths.set( 'dataset_path', "${h.url_for( controller='dataset' )}" ) - - // Init. on document load. - var pageData = ${context_to_js()}; - - //USE_MOCK_DATA = true; - USE_CURR_DATA = true; - - $(function(){ - if( console && console.debug ){ console.debug( 'using backbone.js in history panel' ); } - - if( window.USE_MOCK_DATA ){ - if( console && console.debug ){ console.debug( '\t using mock data' ); } - createMockHistoryData(); - return; - - } else if ( USE_CURR_DATA ){ - if( console && console.debug ){ console.debug( '\t using current history data' ); } - glx_history = new History( pageData.history ).loadDatasetsAsHistoryItems( pageData.hdas ); - glx_history_view = new HistoryView({ model: glx_history }); - glx_history_view.render(); - - hi = glx_history.items.at( 0 ); - hi_view = new HistoryItemView({ model: hi }); - $( 'body' ).append( hi_view.render() ); - return; - } - - // sandbox here - }); -</script> - - -<body class="historyPage"> -</body> +<body class="historyPage"></body> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: greg: Add fix from Bjorn Gruning for telling the user which file is the offender if an uploaded tarball gets rejected in the tool shed.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/5088185a5bca/ changeset: 5088185a5bca user: greg date: 2012-09-13 22:56:44 summary: Add fix from Bjorn Gruning for telling the user which file is the offender if an uploaded tarball gets rejected in the tool shed. affected #: 1 file diff -r 802413bc137b5701699b90ce97a2c4c8c6072679 -r 5088185a5bca723d5e58bb6672327e0310f86fbc lib/galaxy/webapps/community/controllers/upload.py --- a/lib/galaxy/webapps/community/controllers/upload.py +++ b/lib/galaxy/webapps/community/controllers/upload.py @@ -336,8 +336,8 @@ def __check_archive( self, archive ): for member in archive.getmembers(): # Allow regular files and directories only - if not ( member.isdir() or member.isfile() ): - message = "Uploaded archives can only include regular directories and files (no symbolic links, devices, etc)." + if not ( member.isdir() or member.isfile() or member.islnk() ): + message = "Uploaded archives can only include regular directories and files (no symbolic links, devices, etc). Offender: %s" % str( member ) return False, message for item in [ '.hg', '..', '/' ]: if member.name.startswith( item ): Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: greg: Copy required sample files before attempting to load a tool included in a tool shed repository that is being installed into a local Galaxy instance.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/802413bc137b/ changeset: 802413bc137b user: greg date: 2012-09-13 22:41:03 summary: Copy required sample files before attempting to load a tool included in a tool shed repository that is being installed into a local Galaxy instance. affected #: 3 files diff -r 563ab1b6b311af66818ca7031746ba7201b2d7db -r 802413bc137b5701699b90ce97a2c4c8c6072679 lib/galaxy/tool_shed/install_manager.py --- a/lib/galaxy/tool_shed/install_manager.py +++ b/lib/galaxy/tool_shed/install_manager.py @@ -147,13 +147,20 @@ else: tool_dependencies = None if 'tools' in metadata_dict: + sample_files = metadata_dict.get( 'sample_files', [] ) + tool_index_sample_files = get_tool_index_sample_files( sample_files ) + copy_sample_files( self.app, tool_index_sample_files ) + sample_files_copied = [ s for s in tool_index_sample_files ] repository_tools_tups = get_repository_tools_tups( self.app, metadata_dict ) if repository_tools_tups: - sample_files = metadata_dict.get( 'sample_files', [] ) # Handle missing data table entries for tool parameters that are dynamically generated select lists. repository_tools_tups = handle_missing_data_table_entry( self.app, relative_install_dir, self.tool_path, repository_tools_tups ) # Handle missing index files for tool parameters that are dynamically generated select lists. - repository_tools_tups, sample_files_copied = handle_missing_index_file( self.app, self.tool_path, sample_files, repository_tools_tups ) + repository_tools_tups, sample_files_copied = handle_missing_index_file( self.app, + self.tool_path, + sample_files, + repository_tools_tups, + sample_files_copied ) # Copy remaining sample files included in the repository to the ~/tool-data directory of the local Galaxy instance. copy_sample_files( self.app, sample_files, sample_files_copied=sample_files_copied ) if install_dependencies and tool_dependencies and 'tool_dependencies' in metadata_dict: diff -r 563ab1b6b311af66818ca7031746ba7201b2d7db -r 802413bc137b5701699b90ce97a2c4c8c6072679 lib/galaxy/util/shed_util.py --- a/lib/galaxy/util/shed_util.py +++ b/lib/galaxy/util/shed_util.py @@ -1170,6 +1170,12 @@ file_name = strip_path( shed_tool_conf_dict[ 'config_filename' ] ) if shed_tool_conf == file_name: return index, shed_tool_conf_dict +def get_tool_index_sample_files( sample_files ): + tool_index_sample_files = [] + for s in sample_files: + if s.endswith( '.loc.sample' ): + tool_index_sample_files.append( s ) + return tool_index_sample_files def get_tool_dependency( trans, id ): """Get a tool_dependency from the database via id""" return trans.sa_session.query( trans.model.ToolDependency ).get( trans.security.decode_id( id ) ) @@ -1341,12 +1347,11 @@ # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. reset_tool_data_tables( app ) return repository_tools_tups -def handle_missing_index_file( app, tool_path, sample_files, repository_tools_tups ): +def handle_missing_index_file( app, tool_path, sample_files, repository_tools_tups, sample_files_copied ): """ Inspect each tool to see if it has any input parameters that are dynamically generated select lists that depend on a .loc file. This method is not called from the tool shed, but from Galaxy when a repository is being installed. """ - sample_files_copied = [] for index, repository_tools_tup in enumerate( repository_tools_tups ): tup_path, guid, repository_tool = repository_tools_tup params_with_missing_index_file = repository_tool.params_with_missing_index_file diff -r 563ab1b6b311af66818ca7031746ba7201b2d7db -r 802413bc137b5701699b90ce97a2c4c8c6072679 lib/galaxy/web/controllers/admin_toolshed.py --- a/lib/galaxy/web/controllers/admin_toolshed.py +++ b/lib/galaxy/web/controllers/admin_toolshed.py @@ -720,13 +720,20 @@ tool_dependencies = create_tool_dependency_objects( trans.app, tool_shed_repository, relative_install_dir, set_status=True ) if 'tools' in metadata_dict: tool_panel_dict = generate_tool_panel_dict_for_new_install( metadata_dict[ 'tools' ], tool_section ) + sample_files = metadata_dict.get( 'sample_files', [] ) + tool_index_sample_files = get_tool_index_sample_files( sample_files ) + copy_sample_files( self.app, tool_index_sample_files ) + sample_files_copied = [ s for s in tool_index_sample_files ] repository_tools_tups = get_repository_tools_tups( trans.app, metadata_dict ) if repository_tools_tups: # Handle missing data table entries for tool parameters that are dynamically generated select lists. repository_tools_tups = handle_missing_data_table_entry( trans.app, relative_install_dir, tool_path, repository_tools_tups ) # Handle missing index files for tool parameters that are dynamically generated select lists. - sample_files = metadata_dict.get( 'sample_files', [] ) - repository_tools_tups, sample_files_copied = handle_missing_index_file( trans.app, tool_path, sample_files, repository_tools_tups ) + repository_tools_tups, sample_files_copied = handle_missing_index_file( trans.app, + tool_path, + sample_files, + repository_tools_tups, + sample_files_copied ) # Copy remaining sample files included in the repository to the ~/tool-data directory of the local Galaxy instance. copy_sample_files( trans.app, sample_files, sample_files_copied=sample_files_copied ) add_to_tool_panel( app=trans.app, Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: jgoecks: Move require.js to libs directory.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/563ab1b6b311/ changeset: 563ab1b6b311 user: jgoecks date: 2012-09-13 22:23:08 summary: Move require.js to libs directory. affected #: 3 files diff -r 4368df9df27896599a64236a6f8f80ebb0baf8c5 -r 563ab1b6b311af66818ca7031746ba7201b2d7db static/scripts/libs/require.js --- /dev/null +++ b/static/scripts/libs/require.js @@ -0,0 +1,2041 @@ +/** vim: et:ts=4:sw=4:sts=4 + * @license RequireJS 2.0.6 Copyright (c) 2010-2012, The Dojo Foundation All Rights Reserved. + * Available via the MIT or new BSD license. + * see: http://github.com/jrburke/requirejs for details + */ +//Not using strict: uneven strict support in browsers, #392, and causes +//problems with requirejs.exec()/transpiler plugins that may not be strict. +/*jslint regexp: true, nomen: true, sloppy: true */ +/*global window, navigator, document, importScripts, jQuery, setTimeout, opera */ + +var requirejs, require, define; +(function (global) { + var req, s, head, baseElement, dataMain, src, + interactiveScript, currentlyAddingScript, mainScript, subPath, + version = '2.0.6', + commentRegExp = /(\/\*([\s\S]*?)\*\/|([^:]|^)\/\/(.*)$)/mg, + cjsRequireRegExp = /[^.]\s*require\s*$\s*["']([^'"\s]+)["']\s*$/g, + jsSuffixRegExp = /\.js$/, + currDirRegExp = /^\.\//, + op = Object.prototype, + ostring = op.toString, + hasOwn = op.hasOwnProperty, + ap = Array.prototype, + aps = ap.slice, + apsp = ap.splice, + isBrowser = !!(typeof window !== 'undefined' && navigator && document), + isWebWorker = !isBrowser && typeof importScripts !== 'undefined', + //PS3 indicates loaded and complete, but need to wait for complete + //specifically. Sequence is 'loading', 'loaded', execution, + // then 'complete'. The UA check is unfortunate, but not sure how + //to feature test w/o causing perf issues. + readyRegExp = isBrowser && navigator.platform === 'PLAYSTATION 3' ? + /^complete$/ : /^(complete|loaded)$/, + defContextName = '_', + //Oh the tragedy, detecting opera. See the usage of isOpera for reason. + isOpera = typeof opera !== 'undefined' && opera.toString() === '[object Opera]', + contexts = {}, + cfg = {}, + globalDefQueue = [], + useInteractive = false; + + function isFunction(it) { + return ostring.call(it) === '[object Function]'; + } + + function isArray(it) { + return ostring.call(it) === '[object Array]'; + } + + /** + * Helper function for iterating over an array. If the func returns + * a true value, it will break out of the loop. + */ + function each(ary, func) { + if (ary) { + var i; + for (i = 0; i < ary.length; i += 1) { + if (ary[i] && func(ary[i], i, ary)) { + break; + } + } + } + } + + /** + * Helper function for iterating over an array backwards. If the func + * returns a true value, it will break out of the loop. + */ + function eachReverse(ary, func) { + if (ary) { + var i; + for (i = ary.length - 1; i > -1; i -= 1) { + if (ary[i] && func(ary[i], i, ary)) { + break; + } + } + } + } + + function hasProp(obj, prop) { + return hasOwn.call(obj, prop); + } + + /** + * Cycles over properties in an object and calls a function for each + * property value. If the function returns a truthy value, then the + * iteration is stopped. + */ + function eachProp(obj, func) { + var prop; + for (prop in obj) { + if (obj.hasOwnProperty(prop)) { + if (func(obj[prop], prop)) { + break; + } + } + } + } + + /** + * Simple function to mix in properties from source into target, + * but only if target does not already have a property of the same name. + * This is not robust in IE for transferring methods that match + * Object.prototype names, but the uses of mixin here seem unlikely to + * trigger a problem related to that. + */ + function mixin(target, source, force, deepStringMixin) { + if (source) { + eachProp(source, function (value, prop) { + if (force || !hasProp(target, prop)) { + if (deepStringMixin && typeof value !== 'string') { + if (!target[prop]) { + target[prop] = {}; + } + mixin(target[prop], value, force, deepStringMixin); + } else { + target[prop] = value; + } + } + }); + } + return target; + } + + //Similar to Function.prototype.bind, but the 'this' object is specified + //first, since it is easier to read/figure out what 'this' will be. + function bind(obj, fn) { + return function () { + return fn.apply(obj, arguments); + }; + } + + function scripts() { + return document.getElementsByTagName('script'); + } + + //Allow getting a global that expressed in + //dot notation, like 'a.b.c'. + function getGlobal(value) { + if (!value) { + return value; + } + var g = global; + each(value.split('.'), function (part) { + g = g[part]; + }); + return g; + } + + function makeContextModuleFunc(func, relMap, enableBuildCallback) { + return function () { + //A version of a require function that passes a moduleName + //value for items that may need to + //look up paths relative to the moduleName + var args = aps.call(arguments, 0), lastArg; + if (enableBuildCallback && + isFunction((lastArg = args[args.length - 1]))) { + lastArg.__requireJsBuild = true; + } + args.push(relMap); + return func.apply(null, args); + }; + } + + function addRequireMethods(req, context, relMap) { + each([ + ['toUrl'], + ['undef'], + ['defined', 'requireDefined'], + ['specified', 'requireSpecified'] + ], function (item) { + var prop = item[1] || item[0]; + req[item[0]] = context ? makeContextModuleFunc(context[prop], relMap) : + //If no context, then use default context. Reference from + //contexts instead of early binding to default context, so + //that during builds, the latest instance of the default + //context with its config gets used. + function () { + var ctx = contexts[defContextName]; + return ctx[prop].apply(ctx, arguments); + }; + }); + } + + /** + * Constructs an error with a pointer to an URL with more information. + * @param {String} id the error ID that maps to an ID on a web page. + * @param {String} message human readable error. + * @param {Error} [err] the original error, if there is one. + * + * @returns {Error} + */ + function makeError(id, msg, err, requireModules) { + var e = new Error(msg + '\nhttp://requirejs.org/docs/errors.html#' + id); + e.requireType = id; + e.requireModules = requireModules; + if (err) { + e.originalError = err; + } + return e; + } + + if (typeof define !== 'undefined') { + //If a define is already in play via another AMD loader, + //do not overwrite. + return; + } + + if (typeof requirejs !== 'undefined') { + if (isFunction(requirejs)) { + //Do not overwrite and existing requirejs instance. + return; + } + cfg = requirejs; + requirejs = undefined; + } + + //Allow for a require config object + if (typeof require !== 'undefined' && !isFunction(require)) { + //assume it is a config object. + cfg = require; + require = undefined; + } + + function newContext(contextName) { + var inCheckLoaded, Module, context, handlers, + checkLoadedTimeoutId, + config = { + waitSeconds: 7, + baseUrl: './', + paths: {}, + pkgs: {}, + shim: {} + }, + registry = {}, + undefEvents = {}, + defQueue = [], + defined = {}, + urlFetched = {}, + requireCounter = 1, + unnormalizedCounter = 1, + //Used to track the order in which modules + //should be executed, by the order they + //load. Important for consistent cycle resolution + //behavior. + waitAry = []; + + /** + * Trims the . and .. from an array of path segments. + * It will keep a leading path segment if a .. will become + * the first path segment, to help with module name lookups, + * which act like paths, but can be remapped. But the end result, + * all paths that use this function should look normalized. + * NOTE: this method MODIFIES the input array. + * @param {Array} ary the array of path segments. + */ + function trimDots(ary) { + var i, part; + for (i = 0; ary[i]; i += 1) { + part = ary[i]; + if (part === '.') { + ary.splice(i, 1); + i -= 1; + } else if (part === '..') { + if (i === 1 && (ary[2] === '..' || ary[0] === '..')) { + //End of the line. Keep at least one non-dot + //path segment at the front so it can be mapped + //correctly to disk. Otherwise, there is likely + //no path mapping for a path starting with '..'. + //This can still fail, but catches the most reasonable + //uses of .. + break; + } else if (i > 0) { + ary.splice(i - 1, 2); + i -= 2; + } + } + } + } + + /** + * Given a relative module name, like ./something, normalize it to + * a real name that can be mapped to a path. + * @param {String} name the relative name + * @param {String} baseName a real name that the name arg is relative + * to. + * @param {Boolean} applyMap apply the map config to the value. Should + * only be done if this normalization is for a dependency ID. + * @returns {String} normalized name + */ + function normalize(name, baseName, applyMap) { + var pkgName, pkgConfig, mapValue, nameParts, i, j, nameSegment, + foundMap, foundI, foundStarMap, starI, + baseParts = baseName && baseName.split('/'), + normalizedBaseParts = baseParts, + map = config.map, + starMap = map && map['*']; + + //Adjust any relative paths. + if (name && name.charAt(0) === '.') { + //If have a base name, try to normalize against it, + //otherwise, assume it is a top-level require that will + //be relative to baseUrl in the end. + if (baseName) { + if (config.pkgs[baseName]) { + //If the baseName is a package name, then just treat it as one + //name to concat the name with. + normalizedBaseParts = baseParts = [baseName]; + } else { + //Convert baseName to array, and lop off the last part, + //so that . matches that 'directory' and not name of the baseName's + //module. For instance, baseName of 'one/two/three', maps to + //'one/two/three.js', but we want the directory, 'one/two' for + //this normalization. + normalizedBaseParts = baseParts.slice(0, baseParts.length - 1); + } + + name = normalizedBaseParts.concat(name.split('/')); + trimDots(name); + + //Some use of packages may use a . path to reference the + //'main' module name, so normalize for that. + pkgConfig = config.pkgs[(pkgName = name[0])]; + name = name.join('/'); + if (pkgConfig && name === pkgName + '/' + pkgConfig.main) { + name = pkgName; + } + } else if (name.indexOf('./') === 0) { + // No baseName, so this is ID is resolved relative + // to baseUrl, pull off the leading dot. + name = name.substring(2); + } + } + + //Apply map config if available. + if (applyMap && (baseParts || starMap) && map) { + nameParts = name.split('/'); + + for (i = nameParts.length; i > 0; i -= 1) { + nameSegment = nameParts.slice(0, i).join('/'); + + if (baseParts) { + //Find the longest baseName segment match in the config. + //So, do joins on the biggest to smallest lengths of baseParts. + for (j = baseParts.length; j > 0; j -= 1) { + mapValue = map[baseParts.slice(0, j).join('/')]; + + //baseName segment has config, find if it has one for + //this name. + if (mapValue) { + mapValue = mapValue[nameSegment]; + if (mapValue) { + //Match, update name to the new value. + foundMap = mapValue; + foundI = i; + break; + } + } + } + } + + if (foundMap) { + break; + } + + //Check for a star map match, but just hold on to it, + //if there is a shorter segment match later in a matching + //config, then favor over this star map. + if (!foundStarMap && starMap && starMap[nameSegment]) { + foundStarMap = starMap[nameSegment]; + starI = i; + } + } + + if (!foundMap && foundStarMap) { + foundMap = foundStarMap; + foundI = starI; + } + + if (foundMap) { + nameParts.splice(0, foundI, foundMap); + name = nameParts.join('/'); + } + } + + return name; + } + + function removeScript(name) { + if (isBrowser) { + each(scripts(), function (scriptNode) { + if (scriptNode.getAttribute('data-requiremodule') === name && + scriptNode.getAttribute('data-requirecontext') === context.contextName) { + scriptNode.parentNode.removeChild(scriptNode); + return true; + } + }); + } + } + + function hasPathFallback(id) { + var pathConfig = config.paths[id]; + if (pathConfig && isArray(pathConfig) && pathConfig.length > 1) { + removeScript(id); + //Pop off the first array value, since it failed, and + //retry + pathConfig.shift(); + context.undef(id); + context.require([id]); + return true; + } + } + + /** + * Creates a module mapping that includes plugin prefix, module + * name, and path. If parentModuleMap is provided it will + * also normalize the name via require.normalize() + * + * @param {String} name the module name + * @param {String} [parentModuleMap] parent module map + * for the module name, used to resolve relative names. + * @param {Boolean} isNormalized: is the ID already normalized. + * This is true if this call is done for a define() module ID. + * @param {Boolean} applyMap: apply the map config to the ID. + * Should only be true if this map is for a dependency. + * + * @returns {Object} + */ + function makeModuleMap(name, parentModuleMap, isNormalized, applyMap) { + var url, pluginModule, suffix, + index = name ? name.indexOf('!') : -1, + prefix = null, + parentName = parentModuleMap ? parentModuleMap.name : null, + originalName = name, + isDefine = true, + normalizedName = ''; + + //If no name, then it means it is a require call, generate an + //internal name. + if (!name) { + isDefine = false; + name = '_@r' + (requireCounter += 1); + } + + if (index !== -1) { + prefix = name.substring(0, index); + name = name.substring(index + 1, name.length); + } + + if (prefix) { + prefix = normalize(prefix, parentName, applyMap); + pluginModule = defined[prefix]; + } + + //Account for relative paths if there is a base name. + if (name) { + if (prefix) { + if (pluginModule && pluginModule.normalize) { + //Plugin is loaded, use its normalize method. + normalizedName = pluginModule.normalize(name, function (name) { + return normalize(name, parentName, applyMap); + }); + } else { + normalizedName = normalize(name, parentName, applyMap); + } + } else { + //A regular module. + normalizedName = normalize(name, parentName, applyMap); + url = context.nameToUrl(normalizedName); + } + } + + //If the id is a plugin id that cannot be determined if it needs + //normalization, stamp it with a unique ID so two matching relative + //ids that may conflict can be separate. + suffix = prefix && !pluginModule && !isNormalized ? + '_unnormalized' + (unnormalizedCounter += 1) : + ''; + + return { + prefix: prefix, + name: normalizedName, + parentMap: parentModuleMap, + unnormalized: !!suffix, + url: url, + originalName: originalName, + isDefine: isDefine, + id: (prefix ? + prefix + '!' + normalizedName : + normalizedName) + suffix + }; + } + + function getModule(depMap) { + var id = depMap.id, + mod = registry[id]; + + if (!mod) { + mod = registry[id] = new context.Module(depMap); + } + + return mod; + } + + function on(depMap, name, fn) { + var id = depMap.id, + mod = registry[id]; + + if (hasProp(defined, id) && + (!mod || mod.defineEmitComplete)) { + if (name === 'defined') { + fn(defined[id]); + } + } else { + getModule(depMap).on(name, fn); + } + } + + function onError(err, errback) { + var ids = err.requireModules, + notified = false; + + if (errback) { + errback(err); + } else { + each(ids, function (id) { + var mod = registry[id]; + if (mod) { + //Set error on module, so it skips timeout checks. + mod.error = err; + if (mod.events.error) { + notified = true; + mod.emit('error', err); + } + } + }); + + if (!notified) { + req.onError(err); + } + } + } + + /** + * Internal method to transfer globalQueue items to this context's + * defQueue. + */ + function takeGlobalQueue() { + //Push all the globalDefQueue items into the context's defQueue + if (globalDefQueue.length) { + //Array splice in the values since the context code has a + //local var ref to defQueue, so cannot just reassign the one + //on context. + apsp.apply(defQueue, + [defQueue.length - 1, 0].concat(globalDefQueue)); + globalDefQueue = []; + } + } + + /** + * Helper function that creates a require function object to give to + * modules that ask for it as a dependency. It needs to be specific + * per module because of the implication of path mappings that may + * need to be relative to the module name. + */ + function makeRequire(mod, enableBuildCallback, altRequire) { + var relMap = mod && mod.map, + modRequire = makeContextModuleFunc(altRequire || context.require, + relMap, + enableBuildCallback); + + addRequireMethods(modRequire, context, relMap); + modRequire.isBrowser = isBrowser; + + return modRequire; + } + + handlers = { + 'require': function (mod) { + return makeRequire(mod); + }, + 'exports': function (mod) { + mod.usingExports = true; + if (mod.map.isDefine) { + return (mod.exports = defined[mod.map.id] = {}); + } + }, + 'module': function (mod) { + return (mod.module = { + id: mod.map.id, + uri: mod.map.url, + config: function () { + return (config.config && config.config[mod.map.id]) || {}; + }, + exports: defined[mod.map.id] + }); + } + }; + + function removeWaiting(id) { + //Clean up machinery used for waiting modules. + delete registry[id]; + + each(waitAry, function (mod, i) { + if (mod.map.id === id) { + waitAry.splice(i, 1); + if (!mod.defined) { + context.waitCount -= 1; + } + return true; + } + }); + } + + function findCycle(mod, traced, processed) { + var id = mod.map.id, + depArray = mod.depMaps, + foundModule; + + //Do not bother with unitialized modules or not yet enabled + //modules. + if (!mod.inited) { + return; + } + + //Found the cycle. + if (traced[id]) { + return mod; + } + + traced[id] = true; + + //Trace through the dependencies. + each(depArray, function (depMap) { + var depId = depMap.id, + depMod = registry[depId]; + + if (!depMod || processed[depId] || + !depMod.inited || !depMod.enabled) { + return; + } + + return (foundModule = findCycle(depMod, traced, processed)); + }); + + processed[id] = true; + + return foundModule; + } + + function forceExec(mod, traced, uninited) { + var id = mod.map.id, + depArray = mod.depMaps; + + if (!mod.inited || !mod.map.isDefine) { + return; + } + + if (traced[id]) { + return defined[id]; + } + + traced[id] = mod; + + each(depArray, function (depMap) { + var depId = depMap.id, + depMod = registry[depId], + value; + + if (handlers[depId]) { + return; + } + + if (depMod) { + if (!depMod.inited || !depMod.enabled) { + //Dependency is not inited, + //so this module cannot be + //given a forced value yet. + uninited[id] = true; + return; + } + + //Get the value for the current dependency + value = forceExec(depMod, traced, uninited); + + //Even with forcing it may not be done, + //in particular if the module is waiting + //on a plugin resource. + if (!uninited[depId]) { + mod.defineDepById(depId, value); + } + } + }); + + mod.check(true); + + return defined[id]; + } + + function modCheck(mod) { + mod.check(); + } + + function checkLoaded() { + var map, modId, err, usingPathFallback, + waitInterval = config.waitSeconds * 1000, + //It is possible to disable the wait interval by using waitSeconds of 0. + expired = waitInterval && (context.startTime + waitInterval) < new Date().getTime(), + noLoads = [], + stillLoading = false, + needCycleCheck = true; + + //Do not bother if this call was a result of a cycle break. + if (inCheckLoaded) { + return; + } + + inCheckLoaded = true; + + //Figure out the state of all the modules. + eachProp(registry, function (mod) { + map = mod.map; + modId = map.id; + + //Skip things that are not enabled or in error state. + if (!mod.enabled) { + return; + } + + if (!mod.error) { + //If the module should be executed, and it has not + //been inited and time is up, remember it. + if (!mod.inited && expired) { + if (hasPathFallback(modId)) { + usingPathFallback = true; + stillLoading = true; + } else { + noLoads.push(modId); + removeScript(modId); + } + } else if (!mod.inited && mod.fetched && map.isDefine) { + stillLoading = true; + if (!map.prefix) { + //No reason to keep looking for unfinished + //loading. If the only stillLoading is a + //plugin resource though, keep going, + //because it may be that a plugin resource + //is waiting on a non-plugin cycle. + return (needCycleCheck = false); + } + } + } + }); + + if (expired && noLoads.length) { + //If wait time expired, throw error of unloaded modules. + err = makeError('timeout', 'Load timeout for modules: ' + noLoads, null, noLoads); + err.contextName = context.contextName; + return onError(err); + } + + //Not expired, check for a cycle. + if (needCycleCheck) { + + each(waitAry, function (mod) { + if (mod.defined) { + return; + } + + var cycleMod = findCycle(mod, {}, {}), + traced = {}; + + if (cycleMod) { + forceExec(cycleMod, traced, {}); + + //traced modules may have been + //removed from the registry, but + //their listeners still need to + //be called. + eachProp(traced, modCheck); + } + }); + + //Now that dependencies have + //been satisfied, trigger the + //completion check that then + //notifies listeners. + eachProp(registry, modCheck); + } + + //If still waiting on loads, and the waiting load is something + //other than a plugin resource, or there are still outstanding + //scripts, then just try back later. + if ((!expired || usingPathFallback) && stillLoading) { + //Something is still waiting to load. Wait for it, but only + //if a timeout is not already in effect. + if ((isBrowser || isWebWorker) && !checkLoadedTimeoutId) { + checkLoadedTimeoutId = setTimeout(function () { + checkLoadedTimeoutId = 0; + checkLoaded(); + }, 50); + } + } + + inCheckLoaded = false; + } + + Module = function (map) { + this.events = undefEvents[map.id] || {}; + this.map = map; + this.shim = config.shim[map.id]; + this.depExports = []; + this.depMaps = []; + this.depMatched = []; + this.pluginMaps = {}; + this.depCount = 0; + + /* this.exports this.factory + this.depMaps = [], + this.enabled, this.fetched + */ + }; + + Module.prototype = { + init: function (depMaps, factory, errback, options) { + options = options || {}; + + //Do not do more inits if already done. Can happen if there + //are multiple define calls for the same module. That is not + //a normal, common case, but it is also not unexpected. + if (this.inited) { + return; + } + + this.factory = factory; + + if (errback) { + //Register for errors on this module. + this.on('error', errback); + } else if (this.events.error) { + //If no errback already, but there are error listeners + //on this module, set up an errback to pass to the deps. + errback = bind(this, function (err) { + this.emit('error', err); + }); + } + + //Do a copy of the dependency array, so that + //source inputs are not modified. For example + //"shim" deps are passed in here directly, and + //doing a direct modification of the depMaps array + //would affect that config. + this.depMaps = depMaps && depMaps.slice(0); + this.depMaps.rjsSkipMap = depMaps.rjsSkipMap; + + this.errback = errback; + + //Indicate this module has be initialized + this.inited = true; + + this.ignore = options.ignore; + + //Could have option to init this module in enabled mode, + //or could have been previously marked as enabled. However, + //the dependencies are not known until init is called. So + //if enabled previously, now trigger dependencies as enabled. + if (options.enabled || this.enabled) { + //Enable this module and dependencies. + //Will call this.check() + this.enable(); + } else { + this.check(); + } + }, + + defineDepById: function (id, depExports) { + var i; + + //Find the index for this dependency. + each(this.depMaps, function (map, index) { + if (map.id === id) { + i = index; + return true; + } + }); + + return this.defineDep(i, depExports); + }, + + defineDep: function (i, depExports) { + //Because of cycles, defined callback for a given + //export can be called more than once. + if (!this.depMatched[i]) { + this.depMatched[i] = true; + this.depCount -= 1; + this.depExports[i] = depExports; + } + }, + + fetch: function () { + if (this.fetched) { + return; + } + this.fetched = true; + + context.startTime = (new Date()).getTime(); + + var map = this.map; + + //If the manager is for a plugin managed resource, + //ask the plugin to load it now. + if (this.shim) { + makeRequire(this, true)(this.shim.deps || [], bind(this, function () { + return map.prefix ? this.callPlugin() : this.load(); + })); + } else { + //Regular dependency. + return map.prefix ? this.callPlugin() : this.load(); + } + }, + + load: function () { + var url = this.map.url; + + //Regular dependency. + if (!urlFetched[url]) { + urlFetched[url] = true; + context.load(this.map.id, url); + } + }, + + /** + * Checks is the module is ready to define itself, and if so, + * define it. If the silent argument is true, then it will just + * define, but not notify listeners, and not ask for a context-wide + * check of all loaded modules. That is useful for cycle breaking. + */ + check: function (silent) { + if (!this.enabled || this.enabling) { + return; + } + + var err, cjsModule, + id = this.map.id, + depExports = this.depExports, + exports = this.exports, + factory = this.factory; + + if (!this.inited) { + this.fetch(); + } else if (this.error) { + this.emit('error', this.error); + } else if (!this.defining) { + //The factory could trigger another require call + //that would result in checking this module to + //define itself again. If already in the process + //of doing that, skip this work. + this.defining = true; + + if (this.depCount < 1 && !this.defined) { + if (isFunction(factory)) { + //If there is an error listener, favor passing + //to that instead of throwing an error. + if (this.events.error) { + try { + exports = context.execCb(id, factory, depExports, exports); + } catch (e) { + err = e; + } + } else { + exports = context.execCb(id, factory, depExports, exports); + } + + if (this.map.isDefine) { + //If setting exports via 'module' is in play, + //favor that over return value and exports. After that, + //favor a non-undefined return value over exports use. + cjsModule = this.module; + if (cjsModule && + cjsModule.exports !== undefined && + //Make sure it is not already the exports value + cjsModule.exports !== this.exports) { + exports = cjsModule.exports; + } else if (exports === undefined && this.usingExports) { + //exports already set the defined value. + exports = this.exports; + } + } + + if (err) { + err.requireMap = this.map; + err.requireModules = [this.map.id]; + err.requireType = 'define'; + return onError((this.error = err)); + } + + } else { + //Just a literal value + exports = factory; + } + + this.exports = exports; + + if (this.map.isDefine && !this.ignore) { + defined[id] = exports; + + if (req.onResourceLoad) { + req.onResourceLoad(context, this.map, this.depMaps); + } + } + + //Clean up + delete registry[id]; + + this.defined = true; + context.waitCount -= 1; + if (context.waitCount === 0) { + //Clear the wait array used for cycles. + waitAry = []; + } + } + + //Finished the define stage. Allow calling check again + //to allow define notifications below in the case of a + //cycle. + this.defining = false; + + if (!silent) { + if (this.defined && !this.defineEmitted) { + this.defineEmitted = true; + this.emit('defined', this.exports); + this.defineEmitComplete = true; + } + } + } + }, + + callPlugin: function () { + var map = this.map, + id = map.id, + pluginMap = makeModuleMap(map.prefix, null, false, true); + + on(pluginMap, 'defined', bind(this, function (plugin) { + var load, normalizedMap, normalizedMod, + name = this.map.name, + parentName = this.map.parentMap ? this.map.parentMap.name : null; + + //If current map is not normalized, wait for that + //normalized name to load instead of continuing. + if (this.map.unnormalized) { + //Normalize the ID if the plugin allows it. + if (plugin.normalize) { + name = plugin.normalize(name, function (name) { + return normalize(name, parentName, true); + }) || ''; + } + + normalizedMap = makeModuleMap(map.prefix + '!' + name, + this.map.parentMap, + false, + true); + on(normalizedMap, + 'defined', bind(this, function (value) { + this.init([], function () { return value; }, null, { + enabled: true, + ignore: true + }); + })); + normalizedMod = registry[normalizedMap.id]; + if (normalizedMod) { + if (this.events.error) { + normalizedMod.on('error', bind(this, function (err) { + this.emit('error', err); + })); + } + normalizedMod.enable(); + } + + return; + } + + load = bind(this, function (value) { + this.init([], function () { return value; }, null, { + enabled: true + }); + }); + + load.error = bind(this, function (err) { + this.inited = true; + this.error = err; + err.requireModules = [id]; + + //Remove temp unnormalized modules for this module, + //since they will never be resolved otherwise now. + eachProp(registry, function (mod) { + if (mod.map.id.indexOf(id + '_unnormalized') === 0) { + removeWaiting(mod.map.id); + } + }); + + onError(err); + }); + + //Allow plugins to load other code without having to know the + //context or how to 'complete' the load. + load.fromText = function (moduleName, text) { + /*jslint evil: true */ + var hasInteractive = useInteractive; + + //Turn off interactive script matching for IE for any define + //calls in the text, then turn it back on at the end. + if (hasInteractive) { + useInteractive = false; + } + + //Prime the system by creating a module instance for + //it. + getModule(makeModuleMap(moduleName)); + + req.exec(text); + + if (hasInteractive) { + useInteractive = true; + } + + //Support anonymous modules. + context.completeLoad(moduleName); + }; + + //Use parentName here since the plugin's name is not reliable, + //could be some weird string with no path that actually wants to + //reference the parentName's path. + plugin.load(map.name, makeRequire(map.parentMap, true, function (deps, cb, er) { + deps.rjsSkipMap = true; + return context.require(deps, cb, er); + }), load, config); + })); + + context.enable(pluginMap, this); + this.pluginMaps[pluginMap.id] = pluginMap; + }, + + enable: function () { + this.enabled = true; + + if (!this.waitPushed) { + waitAry.push(this); + context.waitCount += 1; + this.waitPushed = true; + } + + //Set flag mentioning that the module is enabling, + //so that immediate calls to the defined callbacks + //for dependencies do not trigger inadvertent load + //with the depCount still being zero. + this.enabling = true; + + //Enable each dependency + each(this.depMaps, bind(this, function (depMap, i) { + var id, mod, handler; + + if (typeof depMap === 'string') { + //Dependency needs to be converted to a depMap + //and wired up to this module. + depMap = makeModuleMap(depMap, + (this.map.isDefine ? this.map : this.map.parentMap), + false, + !this.depMaps.rjsSkipMap); + this.depMaps[i] = depMap; + + handler = handlers[depMap.id]; + + if (handler) { + this.depExports[i] = handler(this); + return; + } + + this.depCount += 1; + + on(depMap, 'defined', bind(this, function (depExports) { + this.defineDep(i, depExports); + this.check(); + })); + + if (this.errback) { + on(depMap, 'error', this.errback); + } + } + + id = depMap.id; + mod = registry[id]; + + //Skip special modules like 'require', 'exports', 'module' + //Also, don't call enable if it is already enabled, + //important in circular dependency cases. + if (!handlers[id] && mod && !mod.enabled) { + context.enable(depMap, this); + } + })); + + //Enable each plugin that is used in + //a dependency + eachProp(this.pluginMaps, bind(this, function (pluginMap) { + var mod = registry[pluginMap.id]; + if (mod && !mod.enabled) { + context.enable(pluginMap, this); + } + })); + + this.enabling = false; + + this.check(); + }, + + on: function (name, cb) { + var cbs = this.events[name]; + if (!cbs) { + cbs = this.events[name] = []; + } + cbs.push(cb); + }, + + emit: function (name, evt) { + each(this.events[name], function (cb) { + cb(evt); + }); + if (name === 'error') { + //Now that the error handler was triggered, remove + //the listeners, since this broken Module instance + //can stay around for a while in the registry/waitAry. + delete this.events[name]; + } + } + }; + + function callGetModule(args) { + getModule(makeModuleMap(args[0], null, true)).init(args[1], args[2]); + } + + function removeListener(node, func, name, ieName) { + //Favor detachEvent because of IE9 + //issue, see attachEvent/addEventListener comment elsewhere + //in this file. + if (node.detachEvent && !isOpera) { + //Probably IE. If not it will throw an error, which will be + //useful to know. + if (ieName) { + node.detachEvent(ieName, func); + } + } else { + node.removeEventListener(name, func, false); + } + } + + /** + * Given an event from a script node, get the requirejs info from it, + * and then removes the event listeners on the node. + * @param {Event} evt + * @returns {Object} + */ + function getScriptData(evt) { + //Using currentTarget instead of target for Firefox 2.0's sake. Not + //all old browsers will be supported, but this one was easy enough + //to support and still makes sense. + var node = evt.currentTarget || evt.srcElement; + + //Remove the listeners once here. + removeListener(node, context.onScriptLoad, 'load', 'onreadystatechange'); + removeListener(node, context.onScriptError, 'error'); + + return { + node: node, + id: node && node.getAttribute('data-requiremodule') + }; + } + + return (context = { + config: config, + contextName: contextName, + registry: registry, + defined: defined, + urlFetched: urlFetched, + waitCount: 0, + defQueue: defQueue, + Module: Module, + makeModuleMap: makeModuleMap, + + /** + * Set a configuration for the context. + * @param {Object} cfg config object to integrate. + */ + configure: function (cfg) { + //Make sure the baseUrl ends in a slash. + if (cfg.baseUrl) { + if (cfg.baseUrl.charAt(cfg.baseUrl.length - 1) !== '/') { + cfg.baseUrl += '/'; + } + } + + //Save off the paths and packages since they require special processing, + //they are additive. + var pkgs = config.pkgs, + shim = config.shim, + paths = config.paths, + map = config.map; + + //Mix in the config values, favoring the new values over + //existing ones in context.config. + mixin(config, cfg, true); + + //Merge paths. + config.paths = mixin(paths, cfg.paths, true); + + //Merge map + if (cfg.map) { + config.map = mixin(map || {}, cfg.map, true, true); + } + + //Merge shim + if (cfg.shim) { + eachProp(cfg.shim, function (value, id) { + //Normalize the structure + if (isArray(value)) { + value = { + deps: value + }; + } + if (value.exports && !value.exports.__buildReady) { + value.exports = context.makeShimExports(value.exports); + } + shim[id] = value; + }); + config.shim = shim; + } + + //Adjust packages if necessary. + if (cfg.packages) { + each(cfg.packages, function (pkgObj) { + var location; + + pkgObj = typeof pkgObj === 'string' ? { name: pkgObj } : pkgObj; + location = pkgObj.location; + + //Create a brand new object on pkgs, since currentPackages can + //be passed in again, and config.pkgs is the internal transformed + //state for all package configs. + pkgs[pkgObj.name] = { + name: pkgObj.name, + location: location || pkgObj.name, + //Remove leading dot in main, so main paths are normalized, + //and remove any trailing .js, since different package + //envs have different conventions: some use a module name, + //some use a file name. + main: (pkgObj.main || 'main') + .replace(currDirRegExp, '') + .replace(jsSuffixRegExp, '') + }; + }); + + //Done with modifications, assing packages back to context config + config.pkgs = pkgs; + } + + //If there are any "waiting to execute" modules in the registry, + //update the maps for them, since their info, like URLs to load, + //may have changed. + eachProp(registry, function (mod, id) { + //If module already has init called, since it is too + //late to modify them, and ignore unnormalized ones + //since they are transient. + if (!mod.inited && !mod.map.unnormalized) { + mod.map = makeModuleMap(id); + } + }); + + //If a deps array or a config callback is specified, then call + //require with those args. This is useful when require is defined as a + //config object before require.js is loaded. + if (cfg.deps || cfg.callback) { + context.require(cfg.deps || [], cfg.callback); + } + }, + + makeShimExports: function (exports) { + var func; + if (typeof exports === 'string') { + func = function () { + return getGlobal(exports); + }; + //Save the exports for use in nodefine checking. + func.exports = exports; + return func; + } else { + return function () { + return exports.apply(global, arguments); + }; + } + }, + + requireDefined: function (id, relMap) { + return hasProp(defined, makeModuleMap(id, relMap, false, true).id); + }, + + requireSpecified: function (id, relMap) { + id = makeModuleMap(id, relMap, false, true).id; + return hasProp(defined, id) || hasProp(registry, id); + }, + + require: function (deps, callback, errback, relMap) { + var moduleName, id, map, requireMod, args; + if (typeof deps === 'string') { + if (isFunction(callback)) { + //Invalid call + return onError(makeError('requireargs', 'Invalid require call'), errback); + } + + //Synchronous access to one module. If require.get is + //available (as in the Node adapter), prefer that. + //In this case deps is the moduleName and callback is + //the relMap + if (req.get) { + return req.get(context, deps, callback); + } + + //Just return the module wanted. In this scenario, the + //second arg (if passed) is just the relMap. + moduleName = deps; + relMap = callback; + + //Normalize module name, if it contains . or .. + map = makeModuleMap(moduleName, relMap, false, true); + id = map.id; + + if (!hasProp(defined, id)) { + return onError(makeError('notloaded', 'Module name "' + + id + + '" has not been loaded yet for context: ' + + contextName)); + } + return defined[id]; + } + + //Callback require. Normalize args. if callback or errback is + //not a function, it means it is a relMap. Test errback first. + if (errback && !isFunction(errback)) { + relMap = errback; + errback = undefined; + } + if (callback && !isFunction(callback)) { + relMap = callback; + callback = undefined; + } + + //Any defined modules in the global queue, intake them now. + takeGlobalQueue(); + + //Make sure any remaining defQueue items get properly processed. + while (defQueue.length) { + args = defQueue.shift(); + if (args[0] === null) { + return onError(makeError('mismatch', 'Mismatched anonymous define() module: ' + args[args.length - 1])); + } else { + //args are id, deps, factory. Should be normalized by the + //define() function. + callGetModule(args); + } + } + + //Mark all the dependencies as needing to be loaded. + requireMod = getModule(makeModuleMap(null, relMap)); + + requireMod.init(deps, callback, errback, { + enabled: true + }); + + checkLoaded(); + + return context.require; + }, + + undef: function (id) { + //Bind any waiting define() calls to this context, + //fix for #408 + takeGlobalQueue(); + + var map = makeModuleMap(id, null, true), + mod = registry[id]; + + delete defined[id]; + delete urlFetched[map.url]; + delete undefEvents[id]; + + if (mod) { + //Hold on to listeners in case the + //module will be attempted to be reloaded + //using a different config. + if (mod.events.defined) { + undefEvents[id] = mod.events; + } + + removeWaiting(id); + } + }, + + /** + * Called to enable a module if it is still in the registry + * awaiting enablement. parent module is passed in for context, + * used by the optimizer. + */ + enable: function (depMap, parent) { + var mod = registry[depMap.id]; + if (mod) { + getModule(depMap).enable(); + } + }, + + /** + * Internal method used by environment adapters to complete a load event. + * A load event could be a script load or just a load pass from a synchronous + * load call. + * @param {String} moduleName the name of the module to potentially complete. + */ + completeLoad: function (moduleName) { + var found, args, mod, + shim = config.shim[moduleName] || {}, + shExports = shim.exports && shim.exports.exports; + + takeGlobalQueue(); + + while (defQueue.length) { + args = defQueue.shift(); + if (args[0] === null) { + args[0] = moduleName; + //If already found an anonymous module and bound it + //to this name, then this is some other anon module + //waiting for its completeLoad to fire. + if (found) { + break; + } + found = true; + } else if (args[0] === moduleName) { + //Found matching define call for this script! + found = true; + } + + callGetModule(args); + } + + //Do this after the cycle of callGetModule in case the result + //of those calls/init calls changes the registry. + mod = registry[moduleName]; + + if (!found && !defined[moduleName] && mod && !mod.inited) { + if (config.enforceDefine && (!shExports || !getGlobal(shExports))) { + if (hasPathFallback(moduleName)) { + return; + } else { + return onError(makeError('nodefine', + 'No define call for ' + moduleName, + null, + [moduleName])); + } + } else { + //A script that does not call define(), so just simulate + //the call for it. + callGetModule([moduleName, (shim.deps || []), shim.exports]); + } + } + + checkLoaded(); + }, + + /** + * Converts a module name + .extension into an URL path. + * *Requires* the use of a module name. It does not support using + * plain URLs like nameToUrl. + */ + toUrl: function (moduleNamePlusExt, relModuleMap) { + var index = moduleNamePlusExt.lastIndexOf('.'), + ext = null; + + if (index !== -1) { + ext = moduleNamePlusExt.substring(index, moduleNamePlusExt.length); + moduleNamePlusExt = moduleNamePlusExt.substring(0, index); + } + + return context.nameToUrl(normalize(moduleNamePlusExt, relModuleMap && relModuleMap.id, true), + ext); + }, + + /** + * Converts a module name to a file path. Supports cases where + * moduleName may actually be just an URL. + * Note that it **does not** call normalize on the moduleName, + * it is assumed to have already been normalized. This is an + * internal API, not a public one. Use toUrl for the public API. + */ + nameToUrl: function (moduleName, ext) { + var paths, pkgs, pkg, pkgPath, syms, i, parentModule, url, + parentPath; + + //If a colon is in the URL, it indicates a protocol is used and it is just + //an URL to a file, or if it starts with a slash, contains a query arg (i.e. ?) + //or ends with .js, then assume the user meant to use an url and not a module id. + //The slash is important for protocol-less URLs as well as full paths. + if (req.jsExtRegExp.test(moduleName)) { + //Just a plain path, not module name lookup, so just return it. + //Add extension if it is included. This is a bit wonky, only non-.js things pass + //an extension, this method probably needs to be reworked. + url = moduleName + (ext || ''); + } else { + //A module that needs to be converted to a path. + paths = config.paths; + pkgs = config.pkgs; + + syms = moduleName.split('/'); + //For each module name segment, see if there is a path + //registered for it. Start with most specific name + //and work up from it. + for (i = syms.length; i > 0; i -= 1) { + parentModule = syms.slice(0, i).join('/'); + pkg = pkgs[parentModule]; + parentPath = paths[parentModule]; + if (parentPath) { + //If an array, it means there are a few choices, + //Choose the one that is desired + if (isArray(parentPath)) { + parentPath = parentPath[0]; + } + syms.splice(0, i, parentPath); + break; + } else if (pkg) { + //If module name is just the package name, then looking + //for the main module. + if (moduleName === pkg.name) { + pkgPath = pkg.location + '/' + pkg.main; + } else { + pkgPath = pkg.location; + } + syms.splice(0, i, pkgPath); + break; + } + } + + //Join the path parts together, then figure out if baseUrl is needed. + url = syms.join('/'); + url += (ext || (/\?/.test(url) ? '' : '.js')); + url = (url.charAt(0) === '/' || url.match(/^[\w\+\.\-]+:/) ? '' : config.baseUrl) + url; + } + + return config.urlArgs ? url + + ((url.indexOf('?') === -1 ? '?' : '&') + + config.urlArgs) : url; + }, + + //Delegates to req.load. Broken out as a separate function to + //allow overriding in the optimizer. + load: function (id, url) { + req.load(context, id, url); + }, + + /** + * Executes a module callack function. Broken out as a separate function + * solely to allow the build system to sequence the files in the built + * layer in the right sequence. + * + * @private + */ + execCb: function (name, callback, args, exports) { + return callback.apply(exports, args); + }, + + /** + * callback for script loads, used to check status of loading. + * + * @param {Event} evt the event from the browser for the script + * that was loaded. + */ + onScriptLoad: function (evt) { + //Using currentTarget instead of target for Firefox 2.0's sake. Not + //all old browsers will be supported, but this one was easy enough + //to support and still makes sense. + if (evt.type === 'load' || + (readyRegExp.test((evt.currentTarget || evt.srcElement).readyState))) { + //Reset interactive script so a script node is not held onto for + //to long. + interactiveScript = null; + + //Pull out the name of the module and the context. + var data = getScriptData(evt); + context.completeLoad(data.id); + } + }, + + /** + * Callback for script errors. + */ + onScriptError: function (evt) { + var data = getScriptData(evt); + if (!hasPathFallback(data.id)) { + return onError(makeError('scripterror', 'Script error', evt, [data.id])); + } + } + }); + } + + /** + * Main entry point. + * + * If the only argument to require is a string, then the module that + * is represented by that string is fetched for the appropriate context. + * + * If the first argument is an array, then it will be treated as an array + * of dependency string names to fetch. An optional function callback can + * be specified to execute when all of those dependencies are available. + * + * Make a local req variable to help Caja compliance (it assumes things + * on a require that are not standardized), and to give a short + * name for minification/local scope use. + */ + req = requirejs = function (deps, callback, errback, optional) { + + //Find the right context, use default + var context, config, + contextName = defContextName; + + // Determine if have config object in the call. + if (!isArray(deps) && typeof deps !== 'string') { + // deps is a config object + config = deps; + if (isArray(callback)) { + // Adjust args if there are dependencies + deps = callback; + callback = errback; + errback = optional; + } else { + deps = []; + } + } + + if (config && config.context) { + contextName = config.context; + } + + context = contexts[contextName]; + if (!context) { + context = contexts[contextName] = req.s.newContext(contextName); + } + + if (config) { + context.configure(config); + } + + return context.require(deps, callback, errback); + }; + + /** + * Support require.config() to make it easier to cooperate with other + * AMD loaders on globally agreed names. + */ + req.config = function (config) { + return req(config); + }; + + /** + * Export require as a global, but only if it does not already exist. + */ + if (!require) { + require = req; + } + + req.version = version; + + //Used to filter out dependencies that are already paths. + req.jsExtRegExp = /^\/|:|\?|\.js$/; + req.isBrowser = isBrowser; + s = req.s = { + contexts: contexts, + newContext: newContext + }; + + //Create default context. + req({}); + + //Exports some context-sensitive methods on global require, using + //default context if no context specified. + addRequireMethods(req); + + if (isBrowser) { + head = s.head = document.getElementsByTagName('head')[0]; + //If BASE tag is in play, using appendChild is a problem for IE6. + //When that browser dies, this can be removed. Details in this jQuery bug: + //http://dev.jquery.com/ticket/2709 + baseElement = document.getElementsByTagName('base')[0]; + if (baseElement) { + head = s.head = baseElement.parentNode; + } + } + + /** + * Any errors that require explicitly generates will be passed to this + * function. Intercept/override it if you want custom error handling. + * @param {Error} err the error object. + */ + req.onError = function (err) { + throw err; + }; + + /** + * Does the request to load a module for the browser case. + * Make this a separate function to allow other environments + * to override it. + * + * @param {Object} context the require context to find state. + * @param {String} moduleName the name of the module. + * @param {Object} url the URL to the module. + */ + req.load = function (context, moduleName, url) { + var config = (context && context.config) || {}, + node; + if (isBrowser) { + //In the browser so use a script tag + node = config.xhtml ? + document.createElementNS('http://www.w3.org/1999/xhtml', 'html:script') : + document.createElement('script'); + node.type = config.scriptType || 'text/javascript'; + node.charset = 'utf-8'; + node.async = true; + + node.setAttribute('data-requirecontext', context.contextName); + node.setAttribute('data-requiremodule', moduleName); + + //Set up load listener. Test attachEvent first because IE9 has + //a subtle issue in its addEventListener and script onload firings + //that do not match the behavior of all other browsers with + //addEventListener support, which fire the onload event for a + //script right after the script execution. See: + //https://connect.microsoft.com/IE/feedback/details/648057/script-onload-event-is-not-fired-immediately-after-script-execution + //UNFORTUNATELY Opera implements attachEvent but does not follow the script + //script execution mode. + if (node.attachEvent && + //Check if node.attachEvent is artificially added by custom script or + //natively supported by browser + //read https://github.com/jrburke/requirejs/issues/187 + //if we can NOT find [native code] then it must NOT natively supported. + //in IE8, node.attachEvent does not have toString() + //Note the test for "[native code" with no closing brace, see: + //https://github.com/jrburke/requirejs/issues/273 + !(node.attachEvent.toString && node.attachEvent.toString().indexOf('[native code') < 0) && + !isOpera) { + //Probably IE. IE (at least 6-8) do not fire + //script onload right after executing the script, so + //we cannot tie the anonymous define call to a name. + //However, IE reports the script as being in 'interactive' + //readyState at the time of the define call. + useInteractive = true; + + node.attachEvent('onreadystatechange', context.onScriptLoad); + //It would be great to add an error handler here to catch + //404s in IE9+. However, onreadystatechange will fire before + //the error handler, so that does not help. If addEvenListener + //is used, then IE will fire error before load, but we cannot + //use that pathway given the connect.microsoft.com issue + //mentioned above about not doing the 'script execute, + //then fire the script load event listener before execute + //next script' that other browsers do. + //Best hope: IE10 fixes the issues, + //and then destroys all installs of IE 6-9. + //node.attachEvent('onerror', context.onScriptError); + } else { + node.addEventListener('load', context.onScriptLoad, false); + node.addEventListener('error', context.onScriptError, false); + } + node.src = url; + + //For some cache cases in IE 6-8, the script executes before the end + //of the appendChild execution, so to tie an anonymous define + //call to the module name (which is stored on the node), hold on + //to a reference to this node, but clear after the DOM insertion. + currentlyAddingScript = node; + if (baseElement) { + head.insertBefore(node, baseElement); + } else { + head.appendChild(node); + } + currentlyAddingScript = null; + + return node; + } else if (isWebWorker) { + //In a web worker, use importScripts. This is not a very + //efficient use of importScripts, importScripts will block until + //its script is downloaded and evaluated. However, if web workers + //are in play, the expectation that a build has been done so that + //only one script needs to be loaded anyway. This may need to be + //reevaluated if other use cases become common. + importScripts(url); + + //Account for anonymous modules + context.completeLoad(moduleName); + } + }; + + function getInteractiveScript() { + if (interactiveScript && interactiveScript.readyState === 'interactive') { + return interactiveScript; + } + + eachReverse(scripts(), function (script) { + if (script.readyState === 'interactive') { + return (interactiveScript = script); + } + }); + return interactiveScript; + } + + //Look for a data-main script attribute, which could also adjust the baseUrl. + if (isBrowser) { + //Figure out baseUrl. Get it from the script tag with require.js in it. + eachReverse(scripts(), function (script) { + //Set the 'head' where we can append children by + //using the script's parent. + if (!head) { + head = script.parentNode; + } + + //Look for a data-main attribute to set main script for the page + //to load. If it is there, the path to data main becomes the + //baseUrl, if it is not already set. + dataMain = script.getAttribute('data-main'); + if (dataMain) { + //Set final baseUrl if there is not already an explicit one. + if (!cfg.baseUrl) { + //Pull off the directory of data-main for use as the + //baseUrl. + src = dataMain.split('/'); + mainScript = src.pop(); + subPath = src.length ? src.join('/') + '/' : './'; + + cfg.baseUrl = subPath; + dataMain = mainScript; + } + + //Strip off any trailing .js since dataMain is now + //like a module name. + dataMain = dataMain.replace(jsSuffixRegExp, ''); + + //Put the data-main script in the files to load. + cfg.deps = cfg.deps ? cfg.deps.concat(dataMain) : [dataMain]; + + return true; + } + }); + } + + /** + * The function that handles definitions of modules. Differs from + * require() in that a string for the module should be the first argument, + * and the function to execute after dependencies are loaded should + * return a value to define the module corresponding to the first argument's + * name. + */ + define = function (name, deps, callback) { + var node, context; + + //Allow for anonymous functions + if (typeof name !== 'string') { + //Adjust args appropriately + callback = deps; + deps = name; + name = null; + } + + //This module may not have dependencies + if (!isArray(deps)) { + callback = deps; + deps = []; + } + + //If no name, and callback is a function, then figure out if it a + //CommonJS thing with dependencies. + if (!deps.length && isFunction(callback)) { + //Remove comments from the callback string, + //look for require calls, and pull them into the dependencies, + //but only if there are function args. + if (callback.length) { + callback + .toString() + .replace(commentRegExp, '') + .replace(cjsRequireRegExp, function (match, dep) { + deps.push(dep); + }); + + //May be a CommonJS thing even without require calls, but still + //could use exports, and module. Avoid doing exports and module + //work though if it just needs require. + //REQUIRES the function to expect the CommonJS variables in the + //order listed below. + deps = (callback.length === 1 ? ['require'] : ['require', 'exports', 'module']).concat(deps); + } + } + + //If in IE 6-8 and hit an anonymous define() call, do the interactive + //work. + if (useInteractive) { + node = currentlyAddingScript || getInteractiveScript(); + if (node) { + if (!name) { + name = node.getAttribute('data-requiremodule'); + } + context = contexts[node.getAttribute('data-requirecontext')]; + } + } + + //Always save off evaluating the def call until the script onload handler. + //This allows multiple modules to be in a file without prematurely + //tracing dependencies, and allows for anonymous module support, + //where the module name is not known until the script onload event + //occurs. If no context, use the global queue, and get it processed + //in the onscript load callback. + (context ? context.defQueue : globalDefQueue).push([name, deps, callback]); + }; + + define.amd = { + jQuery: true + }; + + + /** + * Executes the text. Normally just uses eval, but can be modified + * to use a better, environment-specific call. Only used for transpiling + * loader plugins, not for plain JS modules. + * @param {String} text the text to execute/evaluate. + */ + req.exec = function (text) { + /*jslint evil: true */ + return eval(text); + }; + + //Set up with config info. + req(cfg); +}(this)); diff -r 4368df9df27896599a64236a6f8f80ebb0baf8c5 -r 563ab1b6b311af66818ca7031746ba7201b2d7db static/scripts/require.js --- a/static/scripts/require.js +++ /dev/null @@ -1,2041 +0,0 @@ -/** vim: et:ts=4:sw=4:sts=4 - * @license RequireJS 2.0.6 Copyright (c) 2010-2012, The Dojo Foundation All Rights Reserved. - * Available via the MIT or new BSD license. - * see: http://github.com/jrburke/requirejs for details - */ -//Not using strict: uneven strict support in browsers, #392, and causes -//problems with requirejs.exec()/transpiler plugins that may not be strict. -/*jslint regexp: true, nomen: true, sloppy: true */ -/*global window, navigator, document, importScripts, jQuery, setTimeout, opera */ - -var requirejs, require, define; -(function (global) { - var req, s, head, baseElement, dataMain, src, - interactiveScript, currentlyAddingScript, mainScript, subPath, - version = '2.0.6', - commentRegExp = /(\/\*([\s\S]*?)\*\/|([^:]|^)\/\/(.*)$)/mg, - cjsRequireRegExp = /[^.]\s*require\s*$\s*["']([^'"\s]+)["']\s*$/g, - jsSuffixRegExp = /\.js$/, - currDirRegExp = /^\.\//, - op = Object.prototype, - ostring = op.toString, - hasOwn = op.hasOwnProperty, - ap = Array.prototype, - aps = ap.slice, - apsp = ap.splice, - isBrowser = !!(typeof window !== 'undefined' && navigator && document), - isWebWorker = !isBrowser && typeof importScripts !== 'undefined', - //PS3 indicates loaded and complete, but need to wait for complete - //specifically. Sequence is 'loading', 'loaded', execution, - // then 'complete'. The UA check is unfortunate, but not sure how - //to feature test w/o causing perf issues. - readyRegExp = isBrowser && navigator.platform === 'PLAYSTATION 3' ? - /^complete$/ : /^(complete|loaded)$/, - defContextName = '_', - //Oh the tragedy, detecting opera. See the usage of isOpera for reason. - isOpera = typeof opera !== 'undefined' && opera.toString() === '[object Opera]', - contexts = {}, - cfg = {}, - globalDefQueue = [], - useInteractive = false; - - function isFunction(it) { - return ostring.call(it) === '[object Function]'; - } - - function isArray(it) { - return ostring.call(it) === '[object Array]'; - } - - /** - * Helper function for iterating over an array. If the func returns - * a true value, it will break out of the loop. - */ - function each(ary, func) { - if (ary) { - var i; - for (i = 0; i < ary.length; i += 1) { - if (ary[i] && func(ary[i], i, ary)) { - break; - } - } - } - } - - /** - * Helper function for iterating over an array backwards. If the func - * returns a true value, it will break out of the loop. - */ - function eachReverse(ary, func) { - if (ary) { - var i; - for (i = ary.length - 1; i > -1; i -= 1) { - if (ary[i] && func(ary[i], i, ary)) { - break; - } - } - } - } - - function hasProp(obj, prop) { - return hasOwn.call(obj, prop); - } - - /** - * Cycles over properties in an object and calls a function for each - * property value. If the function returns a truthy value, then the - * iteration is stopped. - */ - function eachProp(obj, func) { - var prop; - for (prop in obj) { - if (obj.hasOwnProperty(prop)) { - if (func(obj[prop], prop)) { - break; - } - } - } - } - - /** - * Simple function to mix in properties from source into target, - * but only if target does not already have a property of the same name. - * This is not robust in IE for transferring methods that match - * Object.prototype names, but the uses of mixin here seem unlikely to - * trigger a problem related to that. - */ - function mixin(target, source, force, deepStringMixin) { - if (source) { - eachProp(source, function (value, prop) { - if (force || !hasProp(target, prop)) { - if (deepStringMixin && typeof value !== 'string') { - if (!target[prop]) { - target[prop] = {}; - } - mixin(target[prop], value, force, deepStringMixin); - } else { - target[prop] = value; - } - } - }); - } - return target; - } - - //Similar to Function.prototype.bind, but the 'this' object is specified - //first, since it is easier to read/figure out what 'this' will be. - function bind(obj, fn) { - return function () { - return fn.apply(obj, arguments); - }; - } - - function scripts() { - return document.getElementsByTagName('script'); - } - - //Allow getting a global that expressed in - //dot notation, like 'a.b.c'. - function getGlobal(value) { - if (!value) { - return value; - } - var g = global; - each(value.split('.'), function (part) { - g = g[part]; - }); - return g; - } - - function makeContextModuleFunc(func, relMap, enableBuildCallback) { - return function () { - //A version of a require function that passes a moduleName - //value for items that may need to - //look up paths relative to the moduleName - var args = aps.call(arguments, 0), lastArg; - if (enableBuildCallback && - isFunction((lastArg = args[args.length - 1]))) { - lastArg.__requireJsBuild = true; - } - args.push(relMap); - return func.apply(null, args); - }; - } - - function addRequireMethods(req, context, relMap) { - each([ - ['toUrl'], - ['undef'], - ['defined', 'requireDefined'], - ['specified', 'requireSpecified'] - ], function (item) { - var prop = item[1] || item[0]; - req[item[0]] = context ? makeContextModuleFunc(context[prop], relMap) : - //If no context, then use default context. Reference from - //contexts instead of early binding to default context, so - //that during builds, the latest instance of the default - //context with its config gets used. - function () { - var ctx = contexts[defContextName]; - return ctx[prop].apply(ctx, arguments); - }; - }); - } - - /** - * Constructs an error with a pointer to an URL with more information. - * @param {String} id the error ID that maps to an ID on a web page. - * @param {String} message human readable error. - * @param {Error} [err] the original error, if there is one. - * - * @returns {Error} - */ - function makeError(id, msg, err, requireModules) { - var e = new Error(msg + '\nhttp://requirejs.org/docs/errors.html#' + id); - e.requireType = id; - e.requireModules = requireModules; - if (err) { - e.originalError = err; - } - return e; - } - - if (typeof define !== 'undefined') { - //If a define is already in play via another AMD loader, - //do not overwrite. - return; - } - - if (typeof requirejs !== 'undefined') { - if (isFunction(requirejs)) { - //Do not overwrite and existing requirejs instance. - return; - } - cfg = requirejs; - requirejs = undefined; - } - - //Allow for a require config object - if (typeof require !== 'undefined' && !isFunction(require)) { - //assume it is a config object. - cfg = require; - require = undefined; - } - - function newContext(contextName) { - var inCheckLoaded, Module, context, handlers, - checkLoadedTimeoutId, - config = { - waitSeconds: 7, - baseUrl: './', - paths: {}, - pkgs: {}, - shim: {} - }, - registry = {}, - undefEvents = {}, - defQueue = [], - defined = {}, - urlFetched = {}, - requireCounter = 1, - unnormalizedCounter = 1, - //Used to track the order in which modules - //should be executed, by the order they - //load. Important for consistent cycle resolution - //behavior. - waitAry = []; - - /** - * Trims the . and .. from an array of path segments. - * It will keep a leading path segment if a .. will become - * the first path segment, to help with module name lookups, - * which act like paths, but can be remapped. But the end result, - * all paths that use this function should look normalized. - * NOTE: this method MODIFIES the input array. - * @param {Array} ary the array of path segments. - */ - function trimDots(ary) { - var i, part; - for (i = 0; ary[i]; i += 1) { - part = ary[i]; - if (part === '.') { - ary.splice(i, 1); - i -= 1; - } else if (part === '..') { - if (i === 1 && (ary[2] === '..' || ary[0] === '..')) { - //End of the line. Keep at least one non-dot - //path segment at the front so it can be mapped - //correctly to disk. Otherwise, there is likely - //no path mapping for a path starting with '..'. - //This can still fail, but catches the most reasonable - //uses of .. - break; - } else if (i > 0) { - ary.splice(i - 1, 2); - i -= 2; - } - } - } - } - - /** - * Given a relative module name, like ./something, normalize it to - * a real name that can be mapped to a path. - * @param {String} name the relative name - * @param {String} baseName a real name that the name arg is relative - * to. - * @param {Boolean} applyMap apply the map config to the value. Should - * only be done if this normalization is for a dependency ID. - * @returns {String} normalized name - */ - function normalize(name, baseName, applyMap) { - var pkgName, pkgConfig, mapValue, nameParts, i, j, nameSegment, - foundMap, foundI, foundStarMap, starI, - baseParts = baseName && baseName.split('/'), - normalizedBaseParts = baseParts, - map = config.map, - starMap = map && map['*']; - - //Adjust any relative paths. - if (name && name.charAt(0) === '.') { - //If have a base name, try to normalize against it, - //otherwise, assume it is a top-level require that will - //be relative to baseUrl in the end. - if (baseName) { - if (config.pkgs[baseName]) { - //If the baseName is a package name, then just treat it as one - //name to concat the name with. - normalizedBaseParts = baseParts = [baseName]; - } else { - //Convert baseName to array, and lop off the last part, - //so that . matches that 'directory' and not name of the baseName's - //module. For instance, baseName of 'one/two/three', maps to - //'one/two/three.js', but we want the directory, 'one/two' for - //this normalization. - normalizedBaseParts = baseParts.slice(0, baseParts.length - 1); - } - - name = normalizedBaseParts.concat(name.split('/')); - trimDots(name); - - //Some use of packages may use a . path to reference the - //'main' module name, so normalize for that. - pkgConfig = config.pkgs[(pkgName = name[0])]; - name = name.join('/'); - if (pkgConfig && name === pkgName + '/' + pkgConfig.main) { - name = pkgName; - } - } else if (name.indexOf('./') === 0) { - // No baseName, so this is ID is resolved relative - // to baseUrl, pull off the leading dot. - name = name.substring(2); - } - } - - //Apply map config if available. - if (applyMap && (baseParts || starMap) && map) { - nameParts = name.split('/'); - - for (i = nameParts.length; i > 0; i -= 1) { - nameSegment = nameParts.slice(0, i).join('/'); - - if (baseParts) { - //Find the longest baseName segment match in the config. - //So, do joins on the biggest to smallest lengths of baseParts. - for (j = baseParts.length; j > 0; j -= 1) { - mapValue = map[baseParts.slice(0, j).join('/')]; - - //baseName segment has config, find if it has one for - //this name. - if (mapValue) { - mapValue = mapValue[nameSegment]; - if (mapValue) { - //Match, update name to the new value. - foundMap = mapValue; - foundI = i; - break; - } - } - } - } - - if (foundMap) { - break; - } - - //Check for a star map match, but just hold on to it, - //if there is a shorter segment match later in a matching - //config, then favor over this star map. - if (!foundStarMap && starMap && starMap[nameSegment]) { - foundStarMap = starMap[nameSegment]; - starI = i; - } - } - - if (!foundMap && foundStarMap) { - foundMap = foundStarMap; - foundI = starI; - } - - if (foundMap) { - nameParts.splice(0, foundI, foundMap); - name = nameParts.join('/'); - } - } - - return name; - } - - function removeScript(name) { - if (isBrowser) { - each(scripts(), function (scriptNode) { - if (scriptNode.getAttribute('data-requiremodule') === name && - scriptNode.getAttribute('data-requirecontext') === context.contextName) { - scriptNode.parentNode.removeChild(scriptNode); - return true; - } - }); - } - } - - function hasPathFallback(id) { - var pathConfig = config.paths[id]; - if (pathConfig && isArray(pathConfig) && pathConfig.length > 1) { - removeScript(id); - //Pop off the first array value, since it failed, and - //retry - pathConfig.shift(); - context.undef(id); - context.require([id]); - return true; - } - } - - /** - * Creates a module mapping that includes plugin prefix, module - * name, and path. If parentModuleMap is provided it will - * also normalize the name via require.normalize() - * - * @param {String} name the module name - * @param {String} [parentModuleMap] parent module map - * for the module name, used to resolve relative names. - * @param {Boolean} isNormalized: is the ID already normalized. - * This is true if this call is done for a define() module ID. - * @param {Boolean} applyMap: apply the map config to the ID. - * Should only be true if this map is for a dependency. - * - * @returns {Object} - */ - function makeModuleMap(name, parentModuleMap, isNormalized, applyMap) { - var url, pluginModule, suffix, - index = name ? name.indexOf('!') : -1, - prefix = null, - parentName = parentModuleMap ? parentModuleMap.name : null, - originalName = name, - isDefine = true, - normalizedName = ''; - - //If no name, then it means it is a require call, generate an - //internal name. - if (!name) { - isDefine = false; - name = '_@r' + (requireCounter += 1); - } - - if (index !== -1) { - prefix = name.substring(0, index); - name = name.substring(index + 1, name.length); - } - - if (prefix) { - prefix = normalize(prefix, parentName, applyMap); - pluginModule = defined[prefix]; - } - - //Account for relative paths if there is a base name. - if (name) { - if (prefix) { - if (pluginModule && pluginModule.normalize) { - //Plugin is loaded, use its normalize method. - normalizedName = pluginModule.normalize(name, function (name) { - return normalize(name, parentName, applyMap); - }); - } else { - normalizedName = normalize(name, parentName, applyMap); - } - } else { - //A regular module. - normalizedName = normalize(name, parentName, applyMap); - url = context.nameToUrl(normalizedName); - } - } - - //If the id is a plugin id that cannot be determined if it needs - //normalization, stamp it with a unique ID so two matching relative - //ids that may conflict can be separate. - suffix = prefix && !pluginModule && !isNormalized ? - '_unnormalized' + (unnormalizedCounter += 1) : - ''; - - return { - prefix: prefix, - name: normalizedName, - parentMap: parentModuleMap, - unnormalized: !!suffix, - url: url, - originalName: originalName, - isDefine: isDefine, - id: (prefix ? - prefix + '!' + normalizedName : - normalizedName) + suffix - }; - } - - function getModule(depMap) { - var id = depMap.id, - mod = registry[id]; - - if (!mod) { - mod = registry[id] = new context.Module(depMap); - } - - return mod; - } - - function on(depMap, name, fn) { - var id = depMap.id, - mod = registry[id]; - - if (hasProp(defined, id) && - (!mod || mod.defineEmitComplete)) { - if (name === 'defined') { - fn(defined[id]); - } - } else { - getModule(depMap).on(name, fn); - } - } - - function onError(err, errback) { - var ids = err.requireModules, - notified = false; - - if (errback) { - errback(err); - } else { - each(ids, function (id) { - var mod = registry[id]; - if (mod) { - //Set error on module, so it skips timeout checks. - mod.error = err; - if (mod.events.error) { - notified = true; - mod.emit('error', err); - } - } - }); - - if (!notified) { - req.onError(err); - } - } - } - - /** - * Internal method to transfer globalQueue items to this context's - * defQueue. - */ - function takeGlobalQueue() { - //Push all the globalDefQueue items into the context's defQueue - if (globalDefQueue.length) { - //Array splice in the values since the context code has a - //local var ref to defQueue, so cannot just reassign the one - //on context. - apsp.apply(defQueue, - [defQueue.length - 1, 0].concat(globalDefQueue)); - globalDefQueue = []; - } - } - - /** - * Helper function that creates a require function object to give to - * modules that ask for it as a dependency. It needs to be specific - * per module because of the implication of path mappings that may - * need to be relative to the module name. - */ - function makeRequire(mod, enableBuildCallback, altRequire) { - var relMap = mod && mod.map, - modRequire = makeContextModuleFunc(altRequire || context.require, - relMap, - enableBuildCallback); - - addRequireMethods(modRequire, context, relMap); - modRequire.isBrowser = isBrowser; - - return modRequire; - } - - handlers = { - 'require': function (mod) { - return makeRequire(mod); - }, - 'exports': function (mod) { - mod.usingExports = true; - if (mod.map.isDefine) { - return (mod.exports = defined[mod.map.id] = {}); - } - }, - 'module': function (mod) { - return (mod.module = { - id: mod.map.id, - uri: mod.map.url, - config: function () { - return (config.config && config.config[mod.map.id]) || {}; - }, - exports: defined[mod.map.id] - }); - } - }; - - function removeWaiting(id) { - //Clean up machinery used for waiting modules. - delete registry[id]; - - each(waitAry, function (mod, i) { - if (mod.map.id === id) { - waitAry.splice(i, 1); - if (!mod.defined) { - context.waitCount -= 1; - } - return true; - } - }); - } - - function findCycle(mod, traced, processed) { - var id = mod.map.id, - depArray = mod.depMaps, - foundModule; - - //Do not bother with unitialized modules or not yet enabled - //modules. - if (!mod.inited) { - return; - } - - //Found the cycle. - if (traced[id]) { - return mod; - } - - traced[id] = true; - - //Trace through the dependencies. - each(depArray, function (depMap) { - var depId = depMap.id, - depMod = registry[depId]; - - if (!depMod || processed[depId] || - !depMod.inited || !depMod.enabled) { - return; - } - - return (foundModule = findCycle(depMod, traced, processed)); - }); - - processed[id] = true; - - return foundModule; - } - - function forceExec(mod, traced, uninited) { - var id = mod.map.id, - depArray = mod.depMaps; - - if (!mod.inited || !mod.map.isDefine) { - return; - } - - if (traced[id]) { - return defined[id]; - } - - traced[id] = mod; - - each(depArray, function (depMap) { - var depId = depMap.id, - depMod = registry[depId], - value; - - if (handlers[depId]) { - return; - } - - if (depMod) { - if (!depMod.inited || !depMod.enabled) { - //Dependency is not inited, - //so this module cannot be - //given a forced value yet. - uninited[id] = true; - return; - } - - //Get the value for the current dependency - value = forceExec(depMod, traced, uninited); - - //Even with forcing it may not be done, - //in particular if the module is waiting - //on a plugin resource. - if (!uninited[depId]) { - mod.defineDepById(depId, value); - } - } - }); - - mod.check(true); - - return defined[id]; - } - - function modCheck(mod) { - mod.check(); - } - - function checkLoaded() { - var map, modId, err, usingPathFallback, - waitInterval = config.waitSeconds * 1000, - //It is possible to disable the wait interval by using waitSeconds of 0. - expired = waitInterval && (context.startTime + waitInterval) < new Date().getTime(), - noLoads = [], - stillLoading = false, - needCycleCheck = true; - - //Do not bother if this call was a result of a cycle break. - if (inCheckLoaded) { - return; - } - - inCheckLoaded = true; - - //Figure out the state of all the modules. - eachProp(registry, function (mod) { - map = mod.map; - modId = map.id; - - //Skip things that are not enabled or in error state. - if (!mod.enabled) { - return; - } - - if (!mod.error) { - //If the module should be executed, and it has not - //been inited and time is up, remember it. - if (!mod.inited && expired) { - if (hasPathFallback(modId)) { - usingPathFallback = true; - stillLoading = true; - } else { - noLoads.push(modId); - removeScript(modId); - } - } else if (!mod.inited && mod.fetched && map.isDefine) { - stillLoading = true; - if (!map.prefix) { - //No reason to keep looking for unfinished - //loading. If the only stillLoading is a - //plugin resource though, keep going, - //because it may be that a plugin resource - //is waiting on a non-plugin cycle. - return (needCycleCheck = false); - } - } - } - }); - - if (expired && noLoads.length) { - //If wait time expired, throw error of unloaded modules. - err = makeError('timeout', 'Load timeout for modules: ' + noLoads, null, noLoads); - err.contextName = context.contextName; - return onError(err); - } - - //Not expired, check for a cycle. - if (needCycleCheck) { - - each(waitAry, function (mod) { - if (mod.defined) { - return; - } - - var cycleMod = findCycle(mod, {}, {}), - traced = {}; - - if (cycleMod) { - forceExec(cycleMod, traced, {}); - - //traced modules may have been - //removed from the registry, but - //their listeners still need to - //be called. - eachProp(traced, modCheck); - } - }); - - //Now that dependencies have - //been satisfied, trigger the - //completion check that then - //notifies listeners. - eachProp(registry, modCheck); - } - - //If still waiting on loads, and the waiting load is something - //other than a plugin resource, or there are still outstanding - //scripts, then just try back later. - if ((!expired || usingPathFallback) && stillLoading) { - //Something is still waiting to load. Wait for it, but only - //if a timeout is not already in effect. - if ((isBrowser || isWebWorker) && !checkLoadedTimeoutId) { - checkLoadedTimeoutId = setTimeout(function () { - checkLoadedTimeoutId = 0; - checkLoaded(); - }, 50); - } - } - - inCheckLoaded = false; - } - - Module = function (map) { - this.events = undefEvents[map.id] || {}; - this.map = map; - this.shim = config.shim[map.id]; - this.depExports = []; - this.depMaps = []; - this.depMatched = []; - this.pluginMaps = {}; - this.depCount = 0; - - /* this.exports this.factory - this.depMaps = [], - this.enabled, this.fetched - */ - }; - - Module.prototype = { - init: function (depMaps, factory, errback, options) { - options = options || {}; - - //Do not do more inits if already done. Can happen if there - //are multiple define calls for the same module. That is not - //a normal, common case, but it is also not unexpected. - if (this.inited) { - return; - } - - this.factory = factory; - - if (errback) { - //Register for errors on this module. - this.on('error', errback); - } else if (this.events.error) { - //If no errback already, but there are error listeners - //on this module, set up an errback to pass to the deps. - errback = bind(this, function (err) { - this.emit('error', err); - }); - } - - //Do a copy of the dependency array, so that - //source inputs are not modified. For example - //"shim" deps are passed in here directly, and - //doing a direct modification of the depMaps array - //would affect that config. - this.depMaps = depMaps && depMaps.slice(0); - this.depMaps.rjsSkipMap = depMaps.rjsSkipMap; - - this.errback = errback; - - //Indicate this module has be initialized - this.inited = true; - - this.ignore = options.ignore; - - //Could have option to init this module in enabled mode, - //or could have been previously marked as enabled. However, - //the dependencies are not known until init is called. So - //if enabled previously, now trigger dependencies as enabled. - if (options.enabled || this.enabled) { - //Enable this module and dependencies. - //Will call this.check() - this.enable(); - } else { - this.check(); - } - }, - - defineDepById: function (id, depExports) { - var i; - - //Find the index for this dependency. - each(this.depMaps, function (map, index) { - if (map.id === id) { - i = index; - return true; - } - }); - - return this.defineDep(i, depExports); - }, - - defineDep: function (i, depExports) { - //Because of cycles, defined callback for a given - //export can be called more than once. - if (!this.depMatched[i]) { - this.depMatched[i] = true; - this.depCount -= 1; - this.depExports[i] = depExports; - } - }, - - fetch: function () { - if (this.fetched) { - return; - } - this.fetched = true; - - context.startTime = (new Date()).getTime(); - - var map = this.map; - - //If the manager is for a plugin managed resource, - //ask the plugin to load it now. - if (this.shim) { - makeRequire(this, true)(this.shim.deps || [], bind(this, function () { - return map.prefix ? this.callPlugin() : this.load(); - })); - } else { - //Regular dependency. - return map.prefix ? this.callPlugin() : this.load(); - } - }, - - load: function () { - var url = this.map.url; - - //Regular dependency. - if (!urlFetched[url]) { - urlFetched[url] = true; - context.load(this.map.id, url); - } - }, - - /** - * Checks is the module is ready to define itself, and if so, - * define it. If the silent argument is true, then it will just - * define, but not notify listeners, and not ask for a context-wide - * check of all loaded modules. That is useful for cycle breaking. - */ - check: function (silent) { - if (!this.enabled || this.enabling) { - return; - } - - var err, cjsModule, - id = this.map.id, - depExports = this.depExports, - exports = this.exports, - factory = this.factory; - - if (!this.inited) { - this.fetch(); - } else if (this.error) { - this.emit('error', this.error); - } else if (!this.defining) { - //The factory could trigger another require call - //that would result in checking this module to - //define itself again. If already in the process - //of doing that, skip this work. - this.defining = true; - - if (this.depCount < 1 && !this.defined) { - if (isFunction(factory)) { - //If there is an error listener, favor passing - //to that instead of throwing an error. - if (this.events.error) { - try { - exports = context.execCb(id, factory, depExports, exports); - } catch (e) { - err = e; - } - } else { - exports = context.execCb(id, factory, depExports, exports); - } - - if (this.map.isDefine) { - //If setting exports via 'module' is in play, - //favor that over return value and exports. After that, - //favor a non-undefined return value over exports use. - cjsModule = this.module; - if (cjsModule && - cjsModule.exports !== undefined && - //Make sure it is not already the exports value - cjsModule.exports !== this.exports) { - exports = cjsModule.exports; - } else if (exports === undefined && this.usingExports) { - //exports already set the defined value. - exports = this.exports; - } - } - - if (err) { - err.requireMap = this.map; - err.requireModules = [this.map.id]; - err.requireType = 'define'; - return onError((this.error = err)); - } - - } else { - //Just a literal value - exports = factory; - } - - this.exports = exports; - - if (this.map.isDefine && !this.ignore) { - defined[id] = exports; - - if (req.onResourceLoad) { - req.onResourceLoad(context, this.map, this.depMaps); - } - } - - //Clean up - delete registry[id]; - - this.defined = true; - context.waitCount -= 1; - if (context.waitCount === 0) { - //Clear the wait array used for cycles. - waitAry = []; - } - } - - //Finished the define stage. Allow calling check again - //to allow define notifications below in the case of a - //cycle. - this.defining = false; - - if (!silent) { - if (this.defined && !this.defineEmitted) { - this.defineEmitted = true; - this.emit('defined', this.exports); - this.defineEmitComplete = true; - } - } - } - }, - - callPlugin: function () { - var map = this.map, - id = map.id, - pluginMap = makeModuleMap(map.prefix, null, false, true); - - on(pluginMap, 'defined', bind(this, function (plugin) { - var load, normalizedMap, normalizedMod, - name = this.map.name, - parentName = this.map.parentMap ? this.map.parentMap.name : null; - - //If current map is not normalized, wait for that - //normalized name to load instead of continuing. - if (this.map.unnormalized) { - //Normalize the ID if the plugin allows it. - if (plugin.normalize) { - name = plugin.normalize(name, function (name) { - return normalize(name, parentName, true); - }) || ''; - } - - normalizedMap = makeModuleMap(map.prefix + '!' + name, - this.map.parentMap, - false, - true); - on(normalizedMap, - 'defined', bind(this, function (value) { - this.init([], function () { return value; }, null, { - enabled: true, - ignore: true - }); - })); - normalizedMod = registry[normalizedMap.id]; - if (normalizedMod) { - if (this.events.error) { - normalizedMod.on('error', bind(this, function (err) { - this.emit('error', err); - })); - } - normalizedMod.enable(); - } - - return; - } - - load = bind(this, function (value) { - this.init([], function () { return value; }, null, { - enabled: true - }); - }); - - load.error = bind(this, function (err) { - this.inited = true; - this.error = err; - err.requireModules = [id]; - - //Remove temp unnormalized modules for this module, - //since they will never be resolved otherwise now. - eachProp(registry, function (mod) { - if (mod.map.id.indexOf(id + '_unnormalized') === 0) { - removeWaiting(mod.map.id); - } - }); - - onError(err); - }); - - //Allow plugins to load other code without having to know the - //context or how to 'complete' the load. - load.fromText = function (moduleName, text) { - /*jslint evil: true */ - var hasInteractive = useInteractive; - - //Turn off interactive script matching for IE for any define - //calls in the text, then turn it back on at the end. - if (hasInteractive) { - useInteractive = false; - } - - //Prime the system by creating a module instance for - //it. - getModule(makeModuleMap(moduleName)); - - req.exec(text); - - if (hasInteractive) { - useInteractive = true; - } - - //Support anonymous modules. - context.completeLoad(moduleName); - }; - - //Use parentName here since the plugin's name is not reliable, - //could be some weird string with no path that actually wants to - //reference the parentName's path. - plugin.load(map.name, makeRequire(map.parentMap, true, function (deps, cb, er) { - deps.rjsSkipMap = true; - return context.require(deps, cb, er); - }), load, config); - })); - - context.enable(pluginMap, this); - this.pluginMaps[pluginMap.id] = pluginMap; - }, - - enable: function () { - this.enabled = true; - - if (!this.waitPushed) { - waitAry.push(this); - context.waitCount += 1; - this.waitPushed = true; - } - - //Set flag mentioning that the module is enabling, - //so that immediate calls to the defined callbacks - //for dependencies do not trigger inadvertent load - //with the depCount still being zero. - this.enabling = true; - - //Enable each dependency - each(this.depMaps, bind(this, function (depMap, i) { - var id, mod, handler; - - if (typeof depMap === 'string') { - //Dependency needs to be converted to a depMap - //and wired up to this module. - depMap = makeModuleMap(depMap, - (this.map.isDefine ? this.map : this.map.parentMap), - false, - !this.depMaps.rjsSkipMap); - this.depMaps[i] = depMap; - - handler = handlers[depMap.id]; - - if (handler) { - this.depExports[i] = handler(this); - return; - } - - this.depCount += 1; - - on(depMap, 'defined', bind(this, function (depExports) { - this.defineDep(i, depExports); - this.check(); - })); - - if (this.errback) { - on(depMap, 'error', this.errback); - } - } - - id = depMap.id; - mod = registry[id]; - - //Skip special modules like 'require', 'exports', 'module' - //Also, don't call enable if it is already enabled, - //important in circular dependency cases. - if (!handlers[id] && mod && !mod.enabled) { - context.enable(depMap, this); - } - })); - - //Enable each plugin that is used in - //a dependency - eachProp(this.pluginMaps, bind(this, function (pluginMap) { - var mod = registry[pluginMap.id]; - if (mod && !mod.enabled) { - context.enable(pluginMap, this); - } - })); - - this.enabling = false; - - this.check(); - }, - - on: function (name, cb) { - var cbs = this.events[name]; - if (!cbs) { - cbs = this.events[name] = []; - } - cbs.push(cb); - }, - - emit: function (name, evt) { - each(this.events[name], function (cb) { - cb(evt); - }); - if (name === 'error') { - //Now that the error handler was triggered, remove - //the listeners, since this broken Module instance - //can stay around for a while in the registry/waitAry. - delete this.events[name]; - } - } - }; - - function callGetModule(args) { - getModule(makeModuleMap(args[0], null, true)).init(args[1], args[2]); - } - - function removeListener(node, func, name, ieName) { - //Favor detachEvent because of IE9 - //issue, see attachEvent/addEventListener comment elsewhere - //in this file. - if (node.detachEvent && !isOpera) { - //Probably IE. If not it will throw an error, which will be - //useful to know. - if (ieName) { - node.detachEvent(ieName, func); - } - } else { - node.removeEventListener(name, func, false); - } - } - - /** - * Given an event from a script node, get the requirejs info from it, - * and then removes the event listeners on the node. - * @param {Event} evt - * @returns {Object} - */ - function getScriptData(evt) { - //Using currentTarget instead of target for Firefox 2.0's sake. Not - //all old browsers will be supported, but this one was easy enough - //to support and still makes sense. - var node = evt.currentTarget || evt.srcElement; - - //Remove the listeners once here. - removeListener(node, context.onScriptLoad, 'load', 'onreadystatechange'); - removeListener(node, context.onScriptError, 'error'); - - return { - node: node, - id: node && node.getAttribute('data-requiremodule') - }; - } - - return (context = { - config: config, - contextName: contextName, - registry: registry, - defined: defined, - urlFetched: urlFetched, - waitCount: 0, - defQueue: defQueue, - Module: Module, - makeModuleMap: makeModuleMap, - - /** - * Set a configuration for the context. - * @param {Object} cfg config object to integrate. - */ - configure: function (cfg) { - //Make sure the baseUrl ends in a slash. - if (cfg.baseUrl) { - if (cfg.baseUrl.charAt(cfg.baseUrl.length - 1) !== '/') { - cfg.baseUrl += '/'; - } - } - - //Save off the paths and packages since they require special processing, - //they are additive. - var pkgs = config.pkgs, - shim = config.shim, - paths = config.paths, - map = config.map; - - //Mix in the config values, favoring the new values over - //existing ones in context.config. - mixin(config, cfg, true); - - //Merge paths. - config.paths = mixin(paths, cfg.paths, true); - - //Merge map - if (cfg.map) { - config.map = mixin(map || {}, cfg.map, true, true); - } - - //Merge shim - if (cfg.shim) { - eachProp(cfg.shim, function (value, id) { - //Normalize the structure - if (isArray(value)) { - value = { - deps: value - }; - } - if (value.exports && !value.exports.__buildReady) { - value.exports = context.makeShimExports(value.exports); - } - shim[id] = value; - }); - config.shim = shim; - } - - //Adjust packages if necessary. - if (cfg.packages) { - each(cfg.packages, function (pkgObj) { - var location; - - pkgObj = typeof pkgObj === 'string' ? { name: pkgObj } : pkgObj; - location = pkgObj.location; - - //Create a brand new object on pkgs, since currentPackages can - //be passed in again, and config.pkgs is the internal transformed - //state for all package configs. - pkgs[pkgObj.name] = { - name: pkgObj.name, - location: location || pkgObj.name, - //Remove leading dot in main, so main paths are normalized, - //and remove any trailing .js, since different package - //envs have different conventions: some use a module name, - //some use a file name. - main: (pkgObj.main || 'main') - .replace(currDirRegExp, '') - .replace(jsSuffixRegExp, '') - }; - }); - - //Done with modifications, assing packages back to context config - config.pkgs = pkgs; - } - - //If there are any "waiting to execute" modules in the registry, - //update the maps for them, since their info, like URLs to load, - //may have changed. - eachProp(registry, function (mod, id) { - //If module already has init called, since it is too - //late to modify them, and ignore unnormalized ones - //since they are transient. - if (!mod.inited && !mod.map.unnormalized) { - mod.map = makeModuleMap(id); - } - }); - - //If a deps array or a config callback is specified, then call - //require with those args. This is useful when require is defined as a - //config object before require.js is loaded. - if (cfg.deps || cfg.callback) { - context.require(cfg.deps || [], cfg.callback); - } - }, - - makeShimExports: function (exports) { - var func; - if (typeof exports === 'string') { - func = function () { - return getGlobal(exports); - }; - //Save the exports for use in nodefine checking. - func.exports = exports; - return func; - } else { - return function () { - return exports.apply(global, arguments); - }; - } - }, - - requireDefined: function (id, relMap) { - return hasProp(defined, makeModuleMap(id, relMap, false, true).id); - }, - - requireSpecified: function (id, relMap) { - id = makeModuleMap(id, relMap, false, true).id; - return hasProp(defined, id) || hasProp(registry, id); - }, - - require: function (deps, callback, errback, relMap) { - var moduleName, id, map, requireMod, args; - if (typeof deps === 'string') { - if (isFunction(callback)) { - //Invalid call - return onError(makeError('requireargs', 'Invalid require call'), errback); - } - - //Synchronous access to one module. If require.get is - //available (as in the Node adapter), prefer that. - //In this case deps is the moduleName and callback is - //the relMap - if (req.get) { - return req.get(context, deps, callback); - } - - //Just return the module wanted. In this scenario, the - //second arg (if passed) is just the relMap. - moduleName = deps; - relMap = callback; - - //Normalize module name, if it contains . or .. - map = makeModuleMap(moduleName, relMap, false, true); - id = map.id; - - if (!hasProp(defined, id)) { - return onError(makeError('notloaded', 'Module name "' + - id + - '" has not been loaded yet for context: ' + - contextName)); - } - return defined[id]; - } - - //Callback require. Normalize args. if callback or errback is - //not a function, it means it is a relMap. Test errback first. - if (errback && !isFunction(errback)) { - relMap = errback; - errback = undefined; - } - if (callback && !isFunction(callback)) { - relMap = callback; - callback = undefined; - } - - //Any defined modules in the global queue, intake them now. - takeGlobalQueue(); - - //Make sure any remaining defQueue items get properly processed. - while (defQueue.length) { - args = defQueue.shift(); - if (args[0] === null) { - return onError(makeError('mismatch', 'Mismatched anonymous define() module: ' + args[args.length - 1])); - } else { - //args are id, deps, factory. Should be normalized by the - //define() function. - callGetModule(args); - } - } - - //Mark all the dependencies as needing to be loaded. - requireMod = getModule(makeModuleMap(null, relMap)); - - requireMod.init(deps, callback, errback, { - enabled: true - }); - - checkLoaded(); - - return context.require; - }, - - undef: function (id) { - //Bind any waiting define() calls to this context, - //fix for #408 - takeGlobalQueue(); - - var map = makeModuleMap(id, null, true), - mod = registry[id]; - - delete defined[id]; - delete urlFetched[map.url]; - delete undefEvents[id]; - - if (mod) { - //Hold on to listeners in case the - //module will be attempted to be reloaded - //using a different config. - if (mod.events.defined) { - undefEvents[id] = mod.events; - } - - removeWaiting(id); - } - }, - - /** - * Called to enable a module if it is still in the registry - * awaiting enablement. parent module is passed in for context, - * used by the optimizer. - */ - enable: function (depMap, parent) { - var mod = registry[depMap.id]; - if (mod) { - getModule(depMap).enable(); - } - }, - - /** - * Internal method used by environment adapters to complete a load event. - * A load event could be a script load or just a load pass from a synchronous - * load call. - * @param {String} moduleName the name of the module to potentially complete. - */ - completeLoad: function (moduleName) { - var found, args, mod, - shim = config.shim[moduleName] || {}, - shExports = shim.exports && shim.exports.exports; - - takeGlobalQueue(); - - while (defQueue.length) { - args = defQueue.shift(); - if (args[0] === null) { - args[0] = moduleName; - //If already found an anonymous module and bound it - //to this name, then this is some other anon module - //waiting for its completeLoad to fire. - if (found) { - break; - } - found = true; - } else if (args[0] === moduleName) { - //Found matching define call for this script! - found = true; - } - - callGetModule(args); - } - - //Do this after the cycle of callGetModule in case the result - //of those calls/init calls changes the registry. - mod = registry[moduleName]; - - if (!found && !defined[moduleName] && mod && !mod.inited) { - if (config.enforceDefine && (!shExports || !getGlobal(shExports))) { - if (hasPathFallback(moduleName)) { - return; - } else { - return onError(makeError('nodefine', - 'No define call for ' + moduleName, - null, - [moduleName])); - } - } else { - //A script that does not call define(), so just simulate - //the call for it. - callGetModule([moduleName, (shim.deps || []), shim.exports]); - } - } - - checkLoaded(); - }, - - /** - * Converts a module name + .extension into an URL path. - * *Requires* the use of a module name. It does not support using - * plain URLs like nameToUrl. - */ - toUrl: function (moduleNamePlusExt, relModuleMap) { - var index = moduleNamePlusExt.lastIndexOf('.'), - ext = null; - - if (index !== -1) { - ext = moduleNamePlusExt.substring(index, moduleNamePlusExt.length); - moduleNamePlusExt = moduleNamePlusExt.substring(0, index); - } - - return context.nameToUrl(normalize(moduleNamePlusExt, relModuleMap && relModuleMap.id, true), - ext); - }, - - /** - * Converts a module name to a file path. Supports cases where - * moduleName may actually be just an URL. - * Note that it **does not** call normalize on the moduleName, - * it is assumed to have already been normalized. This is an - * internal API, not a public one. Use toUrl for the public API. - */ - nameToUrl: function (moduleName, ext) { - var paths, pkgs, pkg, pkgPath, syms, i, parentModule, url, - parentPath; - - //If a colon is in the URL, it indicates a protocol is used and it is just - //an URL to a file, or if it starts with a slash, contains a query arg (i.e. ?) - //or ends with .js, then assume the user meant to use an url and not a module id. - //The slash is important for protocol-less URLs as well as full paths. - if (req.jsExtRegExp.test(moduleName)) { - //Just a plain path, not module name lookup, so just return it. - //Add extension if it is included. This is a bit wonky, only non-.js things pass - //an extension, this method probably needs to be reworked. - url = moduleName + (ext || ''); - } else { - //A module that needs to be converted to a path. - paths = config.paths; - pkgs = config.pkgs; - - syms = moduleName.split('/'); - //For each module name segment, see if there is a path - //registered for it. Start with most specific name - //and work up from it. - for (i = syms.length; i > 0; i -= 1) { - parentModule = syms.slice(0, i).join('/'); - pkg = pkgs[parentModule]; - parentPath = paths[parentModule]; - if (parentPath) { - //If an array, it means there are a few choices, - //Choose the one that is desired - if (isArray(parentPath)) { - parentPath = parentPath[0]; - } - syms.splice(0, i, parentPath); - break; - } else if (pkg) { - //If module name is just the package name, then looking - //for the main module. - if (moduleName === pkg.name) { - pkgPath = pkg.location + '/' + pkg.main; - } else { - pkgPath = pkg.location; - } - syms.splice(0, i, pkgPath); - break; - } - } - - //Join the path parts together, then figure out if baseUrl is needed. - url = syms.join('/'); - url += (ext || (/\?/.test(url) ? '' : '.js')); - url = (url.charAt(0) === '/' || url.match(/^[\w\+\.\-]+:/) ? '' : config.baseUrl) + url; - } - - return config.urlArgs ? url + - ((url.indexOf('?') === -1 ? '?' : '&') + - config.urlArgs) : url; - }, - - //Delegates to req.load. Broken out as a separate function to - //allow overriding in the optimizer. - load: function (id, url) { - req.load(context, id, url); - }, - - /** - * Executes a module callack function. Broken out as a separate function - * solely to allow the build system to sequence the files in the built - * layer in the right sequence. - * - * @private - */ - execCb: function (name, callback, args, exports) { - return callback.apply(exports, args); - }, - - /** - * callback for script loads, used to check status of loading. - * - * @param {Event} evt the event from the browser for the script - * that was loaded. - */ - onScriptLoad: function (evt) { - //Using currentTarget instead of target for Firefox 2.0's sake. Not - //all old browsers will be supported, but this one was easy enough - //to support and still makes sense. - if (evt.type === 'load' || - (readyRegExp.test((evt.currentTarget || evt.srcElement).readyState))) { - //Reset interactive script so a script node is not held onto for - //to long. - interactiveScript = null; - - //Pull out the name of the module and the context. - var data = getScriptData(evt); - context.completeLoad(data.id); - } - }, - - /** - * Callback for script errors. - */ - onScriptError: function (evt) { - var data = getScriptData(evt); - if (!hasPathFallback(data.id)) { - return onError(makeError('scripterror', 'Script error', evt, [data.id])); - } - } - }); - } - - /** - * Main entry point. - * - * If the only argument to require is a string, then the module that - * is represented by that string is fetched for the appropriate context. - * - * If the first argument is an array, then it will be treated as an array - * of dependency string names to fetch. An optional function callback can - * be specified to execute when all of those dependencies are available. - * - * Make a local req variable to help Caja compliance (it assumes things - * on a require that are not standardized), and to give a short - * name for minification/local scope use. - */ - req = requirejs = function (deps, callback, errback, optional) { - - //Find the right context, use default - var context, config, - contextName = defContextName; - - // Determine if have config object in the call. - if (!isArray(deps) && typeof deps !== 'string') { - // deps is a config object - config = deps; - if (isArray(callback)) { - // Adjust args if there are dependencies - deps = callback; - callback = errback; - errback = optional; - } else { - deps = []; - } - } - - if (config && config.context) { - contextName = config.context; - } - - context = contexts[contextName]; - if (!context) { - context = contexts[contextName] = req.s.newContext(contextName); - } - - if (config) { - context.configure(config); - } - - return context.require(deps, callback, errback); - }; - - /** - * Support require.config() to make it easier to cooperate with other - * AMD loaders on globally agreed names. - */ - req.config = function (config) { - return req(config); - }; - - /** - * Export require as a global, but only if it does not already exist. - */ - if (!require) { - require = req; - } - - req.version = version; - - //Used to filter out dependencies that are already paths. - req.jsExtRegExp = /^\/|:|\?|\.js$/; - req.isBrowser = isBrowser; - s = req.s = { - contexts: contexts, - newContext: newContext - }; - - //Create default context. - req({}); - - //Exports some context-sensitive methods on global require, using - //default context if no context specified. - addRequireMethods(req); - - if (isBrowser) { - head = s.head = document.getElementsByTagName('head')[0]; - //If BASE tag is in play, using appendChild is a problem for IE6. - //When that browser dies, this can be removed. Details in this jQuery bug: - //http://dev.jquery.com/ticket/2709 - baseElement = document.getElementsByTagName('base')[0]; - if (baseElement) { - head = s.head = baseElement.parentNode; - } - } - - /** - * Any errors that require explicitly generates will be passed to this - * function. Intercept/override it if you want custom error handling. - * @param {Error} err the error object. - */ - req.onError = function (err) { - throw err; - }; - - /** - * Does the request to load a module for the browser case. - * Make this a separate function to allow other environments - * to override it. - * - * @param {Object} context the require context to find state. - * @param {String} moduleName the name of the module. - * @param {Object} url the URL to the module. - */ - req.load = function (context, moduleName, url) { - var config = (context && context.config) || {}, - node; - if (isBrowser) { - //In the browser so use a script tag - node = config.xhtml ? - document.createElementNS('http://www.w3.org/1999/xhtml', 'html:script') : - document.createElement('script'); - node.type = config.scriptType || 'text/javascript'; - node.charset = 'utf-8'; - node.async = true; - - node.setAttribute('data-requirecontext', context.contextName); - node.setAttribute('data-requiremodule', moduleName); - - //Set up load listener. Test attachEvent first because IE9 has - //a subtle issue in its addEventListener and script onload firings - //that do not match the behavior of all other browsers with - //addEventListener support, which fire the onload event for a - //script right after the script execution. See: - //https://connect.microsoft.com/IE/feedback/details/648057/script-onload-event-is-not-fired-immediately-after-script-execution - //UNFORTUNATELY Opera implements attachEvent but does not follow the script - //script execution mode. - if (node.attachEvent && - //Check if node.attachEvent is artificially added by custom script or - //natively supported by browser - //read https://github.com/jrburke/requirejs/issues/187 - //if we can NOT find [native code] then it must NOT natively supported. - //in IE8, node.attachEvent does not have toString() - //Note the test for "[native code" with no closing brace, see: - //https://github.com/jrburke/requirejs/issues/273 - !(node.attachEvent.toString && node.attachEvent.toString().indexOf('[native code') < 0) && - !isOpera) { - //Probably IE. IE (at least 6-8) do not fire - //script onload right after executing the script, so - //we cannot tie the anonymous define call to a name. - //However, IE reports the script as being in 'interactive' - //readyState at the time of the define call. - useInteractive = true; - - node.attachEvent('onreadystatechange', context.onScriptLoad); - //It would be great to add an error handler here to catch - //404s in IE9+. However, onreadystatechange will fire before - //the error handler, so that does not help. If addEvenListener - //is used, then IE will fire error before load, but we cannot - //use that pathway given the connect.microsoft.com issue - //mentioned above about not doing the 'script execute, - //then fire the script load event listener before execute - //next script' that other browsers do. - //Best hope: IE10 fixes the issues, - //and then destroys all installs of IE 6-9. - //node.attachEvent('onerror', context.onScriptError); - } else { - node.addEventListener('load', context.onScriptLoad, false); - node.addEventListener('error', context.onScriptError, false); - } - node.src = url; - - //For some cache cases in IE 6-8, the script executes before the end - //of the appendChild execution, so to tie an anonymous define - //call to the module name (which is stored on the node), hold on - //to a reference to this node, but clear after the DOM insertion. - currentlyAddingScript = node; - if (baseElement) { - head.insertBefore(node, baseElement); - } else { - head.appendChild(node); - } - currentlyAddingScript = null; - - return node; - } else if (isWebWorker) { - //In a web worker, use importScripts. This is not a very - //efficient use of importScripts, importScripts will block until - //its script is downloaded and evaluated. However, if web workers - //are in play, the expectation that a build has been done so that - //only one script needs to be loaded anyway. This may need to be - //reevaluated if other use cases become common. - importScripts(url); - - //Account for anonymous modules - context.completeLoad(moduleName); - } - }; - - function getInteractiveScript() { - if (interactiveScript && interactiveScript.readyState === 'interactive') { - return interactiveScript; - } - - eachReverse(scripts(), function (script) { - if (script.readyState === 'interactive') { - return (interactiveScript = script); - } - }); - return interactiveScript; - } - - //Look for a data-main script attribute, which could also adjust the baseUrl. - if (isBrowser) { - //Figure out baseUrl. Get it from the script tag with require.js in it. - eachReverse(scripts(), function (script) { - //Set the 'head' where we can append children by - //using the script's parent. - if (!head) { - head = script.parentNode; - } - - //Look for a data-main attribute to set main script for the page - //to load. If it is there, the path to data main becomes the - //baseUrl, if it is not already set. - dataMain = script.getAttribute('data-main'); - if (dataMain) { - //Set final baseUrl if there is not already an explicit one. - if (!cfg.baseUrl) { - //Pull off the directory of data-main for use as the - //baseUrl. - src = dataMain.split('/'); - mainScript = src.pop(); - subPath = src.length ? src.join('/') + '/' : './'; - - cfg.baseUrl = subPath; - dataMain = mainScript; - } - - //Strip off any trailing .js since dataMain is now - //like a module name. - dataMain = dataMain.replace(jsSuffixRegExp, ''); - - //Put the data-main script in the files to load. - cfg.deps = cfg.deps ? cfg.deps.concat(dataMain) : [dataMain]; - - return true; - } - }); - } - - /** - * The function that handles definitions of modules. Differs from - * require() in that a string for the module should be the first argument, - * and the function to execute after dependencies are loaded should - * return a value to define the module corresponding to the first argument's - * name. - */ - define = function (name, deps, callback) { - var node, context; - - //Allow for anonymous functions - if (typeof name !== 'string') { - //Adjust args appropriately - callback = deps; - deps = name; - name = null; - } - - //This module may not have dependencies - if (!isArray(deps)) { - callback = deps; - deps = []; - } - - //If no name, and callback is a function, then figure out if it a - //CommonJS thing with dependencies. - if (!deps.length && isFunction(callback)) { - //Remove comments from the callback string, - //look for require calls, and pull them into the dependencies, - //but only if there are function args. - if (callback.length) { - callback - .toString() - .replace(commentRegExp, '') - .replace(cjsRequireRegExp, function (match, dep) { - deps.push(dep); - }); - - //May be a CommonJS thing even without require calls, but still - //could use exports, and module. Avoid doing exports and module - //work though if it just needs require. - //REQUIRES the function to expect the CommonJS variables in the - //order listed below. - deps = (callback.length === 1 ? ['require'] : ['require', 'exports', 'module']).concat(deps); - } - } - - //If in IE 6-8 and hit an anonymous define() call, do the interactive - //work. - if (useInteractive) { - node = currentlyAddingScript || getInteractiveScript(); - if (node) { - if (!name) { - name = node.getAttribute('data-requiremodule'); - } - context = contexts[node.getAttribute('data-requirecontext')]; - } - } - - //Always save off evaluating the def call until the script onload handler. - //This allows multiple modules to be in a file without prematurely - //tracing dependencies, and allows for anonymous module support, - //where the module name is not known until the script onload event - //occurs. If no context, use the global queue, and get it processed - //in the onscript load callback. - (context ? context.defQueue : globalDefQueue).push([name, deps, callback]); - }; - - define.amd = { - jQuery: true - }; - - - /** - * Executes the text. Normally just uses eval, but can be modified - * to use a better, environment-specific call. Only used for transpiling - * loader plugins, not for plain JS modules. - * @param {String} text the text to execute/evaluate. - */ - req.exec = function (text) { - /*jslint evil: true */ - return eval(text); - }; - - //Set up with config info. - req(cfg); -}(this)); diff -r 4368df9df27896599a64236a6f8f80ebb0baf8c5 -r 563ab1b6b311af66818ca7031746ba7201b2d7db templates/visualization/circster.mako --- a/templates/visualization/circster.mako +++ b/templates/visualization/circster.mako @@ -16,7 +16,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js( "require", "mvc/data" )} + ${h.js( "libs/require", "mvc/data" )} <script type="text/javascript"> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Fix bug in tool_form JS reorganization and fix labels for two Cuffdiff options.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/4368df9df278/ changeset: 4368df9df278 user: jgoecks date: 2012-09-13 22:04:03 summary: Fix bug in tool_form JS reorganization and fix labels for two Cuffdiff options. affected #: 2 files diff -r a683489600be0deb53e5abe6eb07c399e417342e -r 4368df9df27896599a64236a6f8f80ebb0baf8c5 templates/tool_form.mako --- a/templates/tool_form.mako +++ b/templates/tool_form.mako @@ -12,6 +12,7 @@ </%def><%def name="javascripts()"> + ${parent.javascripts()} ${h.js( "galaxy.panels", "libs/jquery/jquery.autocomplete", "libs/jquery/jstorage" )} <script type="text/javascript"> $(function() { diff -r a683489600be0deb53e5abe6eb07c399e417342e -r 4368df9df27896599a64236a6f8f80ebb0baf8c5 tools/ngs_rna/cuffdiff_wrapper.xml --- a/tools/ngs_rna/cuffdiff_wrapper.xml +++ b/tools/ngs_rna/cuffdiff_wrapper.xml @@ -24,8 +24,8 @@ ## Set paired-end data parameters? #if $singlePaired.sPaired == "Yes": - -m $singlePaired.mean_inner_distance - -s $singlePaired.inner_distance_std_dev + -m $singlePaired.frag_mean_len + -s $singlePaired.frag_len_std_dev #end if ## Normalization? @@ -120,8 +120,8 @@ </param><when value="No"></when><when value="Yes"> - <param name="mean_inner_distance" type="integer" value="20" label="Mean Inner Distance between Mate Pairs"/> - <param name="inner_distance_std_dev" type="integer" value="20" label="Standard Deviation for Inner Distance between Mate Pairs"/> + <param name="frag_mean_len" type="integer" value="20" label="Average Fragment Length"/> + <param name="frag_len_std_dev" type="integer" value="20" label="Fragment Length Standard Deviation"/></when></conditional></inputs> @@ -226,8 +226,8 @@ This is a list of implemented Cuffdiff options:: - -m INT This is the expected (mean) inner distance between mate pairs. For, example, for paired end runs with fragments selected at 300bp, where each end is 50bp, you should set -r to be 200. The default is 45bp. - -s INT The standard deviation for the distribution on inner distances between mate pairs. The default is 20bp. + -m INT Average fragement length; default 200 + -s INT Fragment legnth standard deviation; default 80 -c INT The minimum number of alignments in a locus for needed to conduct significance testing on changes in that locus observed between samples. If no testing is performed, changes in the locus are deemed not significant, and the locus' observed changes don't contribute to correction for multiple testing. The default is 1,000 fragment alignments (up to 2,000 paired reads). --FDR FLOAT The allowed false discovery rate. The default is 0.05. --num-importance-samples INT Sets the number of importance samples generated for each locus during abundance estimation. Default: 1000 Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: greg: import re into ~/tools.__init__ since some recent methods use it.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/a683489600be/ changeset: a683489600be user: greg date: 2012-09-13 21:57:48 summary: import re into ~/tools.__init__ since some recent methods use it. affected #: 1 file diff -r 9b13c3554a09eefd75387f1740ed9e4b0c32c50f -r a683489600be0deb53e5abe6eb07c399e417342e lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -6,7 +6,7 @@ pkg_resources.require( "simplejson" ) pkg_resources.require( "Mako" ) -import logging, os, string, sys, tempfile, glob, shutil, types, urllib, subprocess, random, math, traceback +import logging, os, string, sys, tempfile, glob, shutil, types, urllib, subprocess, random, math, traceback, re import simplejson import binascii from mako.template import Template Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Add mako template for rendering common trackster dependencies. This fixes shared/embedded visualizations, which were broken in recent commits.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/9b13c3554a09/ changeset: 9b13c3554a09 user: jgoecks date: 2012-09-13 21:51:50 summary: Add mako template for rendering common trackster dependencies. This fixes shared/embedded visualizations, which were broken in recent commits. affected #: 5 files diff -r cc064ff4249b2701198a4121154f62182cd048ce -r 9b13c3554a09eefd75387f1740ed9e4b0c32c50f templates/base_panels.mako --- a/templates/base_panels.mako +++ b/templates/base_panels.mako @@ -48,7 +48,7 @@  - ${h.js( 'libs/jquery/jquery', 'libs/json2', 'libs/bootstrap', 'libs/underscore', 'libs/backbone/backbone', 'libs/backbone/backbone-relational', 'libs/handlebars.runtime', 'mvc/ui' )} + ${h.js( 'libs/jquery/jquery', 'libs/json2', 'libs/bootstrap', 'libs/underscore', 'libs/backbone/backbone', 'libs/backbone/backbone-relational', 'libs/handlebars.runtime', 'mvc/ui', 'galaxy.base' )} <script type="text/javascript"> // Set up needed paths. var galaxy_paths = new GalaxyPaths({ @@ -73,7 +73,7 @@ <%def name="late_javascripts()"> ## Scripts can be loaded later since they progressively add features to ## the panels, but do not change layout - ${h.js( 'libs/jquery/jquery.event.drag', 'libs/jquery/jquery.event.hover', 'libs/jquery/jquery.form', 'libs/jquery/jquery.rating', 'galaxy.base', 'galaxy.panels' )} + ${h.js( 'libs/jquery/jquery.event.drag', 'libs/jquery/jquery.event.hover', 'libs/jquery/jquery.form', 'libs/jquery/jquery.rating', 'galaxy.panels' )} <script type="text/javascript"> ensure_dd_helper(); diff -r cc064ff4249b2701198a4121154f62182cd048ce -r 9b13c3554a09eefd75387f1740ed9e4b0c32c50f templates/display_base.mako --- a/templates/display_base.mako +++ b/templates/display_base.mako @@ -11,6 +11,7 @@ <%inherit file="${inherit( context )}"/><%namespace file="/tagging_common.mako" import="render_individual_tagging_element, render_community_tagging_element" /><%namespace file="/display_common.mako" import="*" /> +<%namespace file="/visualization/trackster_common.mako" import="*" /> ## ## Functions used by base.mako and base_panels.mako to display content. @@ -33,8 +34,8 @@ <%def name="javascripts()"> ${parent.javascripts()} ${h.js( "libs/jquery/jstorage", "libs/jquery/jquery.autocomplete", "libs/jquery/jquery.rating", - "galaxy.autocom_tagging", "viz/trackster", "viz/trackster_ui", "libs/jquery/jquery.event.drag", "libs/jquery/jquery.mousewheel", - "libs/jquery/jquery.autocomplete", "libs/jquery/jquery.ui.sortable.slider", "libs/farbtastic", "mvc/data", "viz/visualization" )} + "galaxy.autocom_tagging" )} + ${render_trackster_js_files()} <script type="text/javascript"> @@ -113,7 +114,8 @@ <%def name="stylesheets()"> ${parent.stylesheets()} - ${h.css( "autocomplete_tagging", "embed_item", "trackster", "jquery.rating", "jquery-ui/smoothness/jquery-ui-1.8.23.custom" )} + ${h.css( "autocomplete_tagging", "embed_item", "jquery.rating" )} + ${render_trackster_css_files()} <style type="text/css"> .page-body { diff -r cc064ff4249b2701198a4121154f62182cd048ce -r 9b13c3554a09eefd75387f1740ed9e4b0c32c50f templates/tracks/browser.mako --- a/templates/tracks/browser.mako +++ b/templates/tracks/browser.mako @@ -1,4 +1,5 @@ <%inherit file="/webapps/galaxy/base_panels.mako"/> +<%namespace file="/visualization/trackster_common.mako" import="*" /><%def name="init()"><% @@ -11,7 +12,7 @@ <%def name="stylesheets()"> ${parent.stylesheets()} - ${h.css( "history", "autocomplete_tagging", "trackster", "library", "jquery-ui/smoothness/jquery-ui-1.8.23.custom" )} + ${render_trackster_css_files()} </%def><%def name="javascripts()"> @@ -21,7 +22,7 @@ <script type='text/javascript' src="${h.url_for('/static/scripts/libs/IE/excanvas.js')}"></script><![endif]--> -${h.js( "galaxy.panels", "libs/jquery/jstorage", "libs/jquery/jquery.event.drag", "libs/jquery/jquery.event.hover","libs/jquery/jquery.mousewheel", "libs/jquery/jquery-ui-1.8.23.custom.min", "mvc/data", "viz/visualization", "viz/trackster", "viz/trackster_ui", "libs/farbtastic" )} +${render_trackster_js_files()} <script type="text/javascript"> // @@ -30,17 +31,10 @@ galaxy_paths.set({ visualization_url: "${h.url_for( action='save' )}" }); - var - add_track_async_url = "${h.url_for( action='add_track_async' )}", - add_datasets_url = "${h.url_for( action='list_current_history_datasets' )}", - default_data_url = "${h.url_for( action='data' )}", - raw_data_url = "${h.url_for( action='raw_data' )}", - reference_url = "${h.url_for( action='reference' )}", - chrom_url = "${h.url_for( action='chroms' )}", - dataset_state_url = "${h.url_for( action='dataset_state' )}", - converted_datasets_state_url = "${h.url_for( action='converted_datasets_state' )}", - feature_search_url = "${h.url_for( action='search_features' )}", - view, + + ${render_trackster_js_vars()} + + var view, browser_router; /** diff -r cc064ff4249b2701198a4121154f62182cd048ce -r 9b13c3554a09eefd75387f1740ed9e4b0c32c50f templates/visualization/display.mako --- a/templates/visualization/display.mako +++ b/templates/visualization/display.mako @@ -1,4 +1,5 @@ <%inherit file="/display_base.mako"/> +<%namespace file="/visualization/trackster_common.mako" import="*" /><%def name="javascripts()"><% config = item_data %> @@ -54,20 +55,9 @@ <script type="text/javascript"> // TODO: much of this code is copied from browser.mako -- create shared base and use in both places. - - // - // Place URLs here so that url_for can be used to generate them. - // - var default_data_url = "${h.url_for( controller='/tracks', action='data' )}", - raw_data_url = "${h.url_for( controller='/tracks', action='raw_data' )}", - run_tool_url = "${h.url_for( controller='/tracks', action='run_tool' )}", - rerun_tool_url = "${h.url_for( controller='/tracks', action='rerun_tool' )}", - reference_url = "${h.url_for( controller='/tracks', action='reference' )}", - chrom_url = "${h.url_for( controller='/tracks', action='chroms' )}", - dataset_state_url = "${h.url_for( controller='/tracks', action='dataset_state' )}", - converted_datasets_state_url = "${h.url_for( controller='/tracks', action='converted_datasets_state' )}", - addable_track_types = { "LineTrack": LineTrack, "FeatureTrack": FeatureTrack, "ReadTrack": ReadTrack }, - view, + ${render_trackster_js_vars()} + + var view, container_element = $("#${trans.security.encode_id( visualization.id )}"); $(function() { diff -r cc064ff4249b2701198a4121154f62182cd048ce -r 9b13c3554a09eefd75387f1740ed9e4b0c32c50f templates/visualization/trackster_common.mako --- /dev/null +++ b/templates/visualization/trackster_common.mako @@ -0,0 +1,28 @@ +## +## Utilities for creating Trackster visualizations. +## + +## Render needed CSS files. +<%def name="render_trackster_css_files()"> + ${h.css( "history", "autocomplete_tagging", "trackster", "library", + "jquery-ui/smoothness/jquery-ui-1.8.23.custom" )} +</%def> + + +## Render needed JavaScript files. +<%def name="render_trackster_js_files()"> + ${h.js( "galaxy.panels", "libs/jquery/jstorage", "libs/jquery/jquery.event.drag", "libs/jquery/jquery.event.hover","libs/jquery/jquery.mousewheel", "libs/jquery/jquery-ui-1.8.23.custom.min", "mvc/data", "viz/visualization", "viz/trackster", "viz/trackster_ui", "libs/farbtastic" )} +</%def> + +## Render a block of JavaScript that contains all necessary variables for Trackster. +<%def name="render_trackster_js_vars()"> + var add_track_async_url = "${h.url_for( controller='/tracks', action='add_track_async' )}", + add_datasets_url = "${h.url_for( controller='/tracks', action='list_current_history_datasets' )}", + default_data_url = "${h.url_for( controller='/tracks', action='data' )}", + raw_data_url = "${h.url_for( controller='/tracks', action='raw_data' )}", + reference_url = "${h.url_for( controller='/tracks', action='reference' )}", + chrom_url = "${h.url_for( controller='/tracks', action='chroms' )}", + dataset_state_url = "${h.url_for( controller='/tracks', action='dataset_state' )}", + converted_datasets_state_url = "${h.url_for( controller='/tracks', action='converted_datasets_state' )}", + feature_search_url = "${h.url_for( controller='/tracks', action='search_features' )}"; +</%def> \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: dan: Fix for fastq filter tool single-ended reads.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/cc064ff4249b/ changeset: cc064ff4249b user: dan date: 2012-09-13 21:41:18 summary: Fix for fastq filter tool single-ended reads. affected #: 1 file diff -r c4ced3262d0d50719dd5d7d24ed10627b75d67ba -r cc064ff4249b2701198a4121154f62182cd048ce tools/fastq/fastq_filter.xml --- a/tools/fastq/fastq_filter.xml +++ b/tools/fastq/fastq_filter.xml @@ -74,7 +74,7 @@ return False else: num_deviates -= 1 -#if $paired_end.value == 'single_end': +#if not $paired_end: qual_scores_split = [ qual_scores ] #else: qual_scores_split = [ qual_scores[ 0:int( len( qual_scores ) / 2 ) ], qual_scores[ int( len( qual_scores ) / 2 ): ] ] Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: greg: Another fix for handling Galaxy's ToolDataTableManager correctly in the tool shed.
by Bitbucket 13 Sep '12

13 Sep '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/c4ced3262d0d/ changeset: c4ced3262d0d user: greg date: 2012-09-13 21:31:56 summary: Another fix for handling Galaxy's ToolDataTableManager correctly in the tool shed. affected #: 4 files diff -r 2551b8632edea0df8b71ef6b426e30b7159153a4 -r c4ced3262d0d50719dd5d7d24ed10627b75d67ba lib/galaxy/util/shed_util.py --- a/lib/galaxy/util/shed_util.py +++ b/lib/galaxy/util/shed_util.py @@ -340,9 +340,6 @@ correction_msg = "This file refers to a file named <b>%s</b>. " % str( index_file ) correction_msg += "Upload a file named <b>%s.sample</b> to the repository to correct this error." % str( index_file_name ) invalid_files_and_errors_tups.append( ( tool_config_name, correction_msg ) ) - if webapp == 'community': - # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. - reset_tool_data_tables( app ) return invalid_files_and_errors_tups def config_elems_to_xml_file( app, config_elems, config_filename, tool_path ): # Persist the current in-memory list of config_elems to a file named by the value of config_filename. @@ -583,31 +580,6 @@ else: tool_dependencies_dict[ 'set_environment' ] = [ requirements_dict ] return tool_dependencies_dict -def generate_tool_dependency_metadata( tool_dependencies_config, metadata_dict ): - """ - If the combination of name, version and type of each element is defined in the <requirement> tag for at least one tool in the repository, - then update the received metadata_dict with information from the parsed tool_dependencies_config. - """ - try: - tree = ElementTree.parse( tool_dependencies_config ) - except Exception, e: - log.debug( "Exception attempting to parse tool_dependencies.xml: %s" %str( e ) ) - return metadata_dict - root = tree.getroot() - ElementInclude.include( root ) - tool_dependencies_dict = {} - if can_generate_tool_dependency_metadata( root, metadata_dict ): - for elem in root: - if elem.tag == 'package': - tool_dependencies_dict = generate_package_dependency_metadata( elem, tool_dependencies_dict ) - elif elem.tag == 'set_environment': - tool_dependencies_dict = generate_environment_dependency_metadata( elem, tool_dependencies_dict ) - # Handle tool dependency installation via other means here (future). - if tool_dependencies_dict: - metadata_dict[ 'tool_dependencies' ] = tool_dependencies_dict - if tool_dependencies_dict: - metadata_dict[ 'tool_dependencies' ] = tool_dependencies_dict - return metadata_dict def generate_metadata_for_changeset_revision( app, repository_clone_url, relative_install_dir=None, repository_files_dir=None, resetting_all_metadata_on_repository=False, webapp='galaxy' ): """ @@ -621,6 +593,7 @@ invalid_tool_configs = [] tool_dependencies_config = None original_tool_data_path = app.config.tool_data_path + original_tool_data_table_config_path = app.config.tool_data_table_config_path if resetting_all_metadata_on_repository: if not relative_install_dir: raise Exception( "The value of repository.repo_path must be sent when resetting all metadata on a repository." ) @@ -630,12 +603,14 @@ files_dir = repository_files_dir # Since we're working from a temporary directory, we can safely copy sample files included in the repository to the repository root. app.config.tool_data_path = repository_files_dir + app.config.tool_data_table_config_path = repository_files_dir else: # Use a temporary working directory to copy all sample files. work_dir = tempfile.mkdtemp() # All other files are on disk in the repository's repo_path, which is the value of relative_install_dir. files_dir = relative_install_dir app.config.tool_data_path = work_dir + app.config.tool_data_table_config_path = work_dir # Handle proprietary datatypes, if any. datatypes_config = get_config_from_disk( 'datatypes_conf.xml', files_dir ) if datatypes_config: @@ -719,11 +694,9 @@ metadata_dict = generate_tool_dependency_metadata( tool_dependencies_config, metadata_dict ) if invalid_tool_configs: metadata_dict [ 'invalid_tools' ] = invalid_tool_configs - if webapp == 'community' and resetting_all_metadata_on_repository: - # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. - reset_tool_data_tables( app ) - # Reset the value of the app's tool_data_path to it's original value. - app.config.tool_data_path = original_tool_data_path + # Reset the value of the app's tool_data_path and tool_data_table_config_path to their respective original values. + app.config.tool_data_path = original_tool_data_path + app.config.tool_data_table_config_path = original_tool_data_table_config_path return metadata_dict, invalid_file_tups def generate_package_dependency_metadata( elem, tool_dependencies_dict ): """The value of package_name must match the value of the "package" type in the tool config's <requirements> tag set.""" @@ -741,6 +714,31 @@ if requirements_dict: tool_dependencies_dict[ dependency_key ] = requirements_dict return tool_dependencies_dict +def generate_tool_dependency_metadata( tool_dependencies_config, metadata_dict ): + """ + If the combination of name, version and type of each element is defined in the <requirement> tag for at least one tool in the repository, + then update the received metadata_dict with information from the parsed tool_dependencies_config. + """ + try: + tree = ElementTree.parse( tool_dependencies_config ) + except Exception, e: + log.debug( "Exception attempting to parse tool_dependencies.xml: %s" %str( e ) ) + return metadata_dict + root = tree.getroot() + ElementInclude.include( root ) + tool_dependencies_dict = {} + if can_generate_tool_dependency_metadata( root, metadata_dict ): + for elem in root: + if elem.tag == 'package': + tool_dependencies_dict = generate_package_dependency_metadata( elem, tool_dependencies_dict ) + elif elem.tag == 'set_environment': + tool_dependencies_dict = generate_environment_dependency_metadata( elem, tool_dependencies_dict ) + # Handle tool dependency installation via other means here (future). + if tool_dependencies_dict: + metadata_dict[ 'tool_dependencies' ] = tool_dependencies_dict + if tool_dependencies_dict: + metadata_dict[ 'tool_dependencies' ] = tool_dependencies_dict + return metadata_dict def generate_tool_guid( repository_clone_url, tool ): """ Generate a guid for the installed tool. It is critical that this guid matches the guid for diff -r 2551b8632edea0df8b71ef6b426e30b7159153a4 -r c4ced3262d0d50719dd5d7d24ed10627b75d67ba lib/galaxy/webapps/community/controllers/admin.py --- a/lib/galaxy/webapps/community/controllers/admin.py +++ b/lib/galaxy/webapps/community/controllers/admin.py @@ -696,7 +696,7 @@ owner = repository_name_owner_list[ 1 ] repository = get_repository_by_name_and_owner( trans, name, owner ) try: - invalid_file_tups = reset_all_metadata_on_repository( trans, trans.security.encode_id( repository.id ) ) + invalid_file_tups, metadata_dict = reset_all_metadata_on_repository( trans, trans.security.encode_id( repository.id ) ) if invalid_file_tups: message = generate_message_for_invalid_tools( invalid_file_tups, repository, None, as_html=False ) log.debug( message ) diff -r 2551b8632edea0df8b71ef6b426e30b7159153a4 -r c4ced3262d0d50719dd5d7d24ed10627b75d67ba lib/galaxy/webapps/community/controllers/common.py --- a/lib/galaxy/webapps/community/controllers/common.py +++ b/lib/galaxy/webapps/community/controllers/common.py @@ -937,7 +937,9 @@ clean_repository_metadata( trans, id, changeset_revisions ) # Set tool version information for all downloadable changeset revisions. Get the list of changeset revisions from the changelog. reset_all_tool_versions( trans, id, repo ) - return invalid_file_tups + # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. + reset_tool_data_tables( trans.app ) + return invalid_file_tups, metadata_dict def set_repository_metadata( trans, repository, content_alert_str='', **kwd ): """ Set metadata using the repository's current disk files, returning specific error messages (if any) to alert the repository owner that the changeset @@ -1000,6 +1002,8 @@ if invalid_file_tups: message = generate_message_for_invalid_tools( invalid_file_tups, repository, metadata_dict ) status = 'error' + # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. + reset_tool_data_tables( trans.app ) return message, status def set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=None, **kwd ): # Set metadata on the repository tip. diff -r 2551b8632edea0df8b71ef6b426e30b7159153a4 -r c4ced3262d0d50719dd5d7d24ed10627b75d67ba lib/galaxy/webapps/community/controllers/repository.py --- a/lib/galaxy/webapps/community/controllers/repository.py +++ b/lib/galaxy/webapps/community/controllers/repository.py @@ -1817,10 +1817,10 @@ status=status ) @web.expose def reset_all_metadata( self, trans, id, **kwd ): - invalid_file_tups = reset_all_metadata_on_repository( trans, id, **kwd ) + invalid_file_tups, metadata_dict = reset_all_metadata_on_repository( trans, id, **kwd ) if invalid_file_tups: repository = get_repository( trans, id ) - message = generate_message_for_invalid_tools( invalid_file_tups, repository, None ) + message = generate_message_for_invalid_tools( invalid_file_tups, repository, metadata_dict ) status = 'error' else: message = "All repository metadata has been reset." 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