January 2013 - galaxy-commits - lists.galaxyproject.org

commit/galaxy-central: james_taylor: workflow: tool search always on, fix tool menu padding, using cog icon for options menu
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/e81e8298d157/ changeset: e81e8298d157 user: james_taylor date: 2013-01-03 22:21:57 summary: workflow: tool search always on, fix tool menu padding, using cog icon for options menu affected #: 1 file <HgDiff e81e8298d157:4c96179f6fe1 ['templates/workflow/editor.mako']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Add missing import to visualization controller.
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/4c96179f6fe1/ changeset: 4c96179f6fe1 user: jgoecks date: 2013-01-03 21:12:51 summary: Add missing import to visualization controller. affected #: 1 file <HgDiff 4c96179f6fe1:3fb6035cdc66 ['lib/galaxy/webapps/galaxy/controllers/visualization.py']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Enable BBI data provider to work even when chromosome naming conventions are mixed.
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/3fb6035cdc66/ changeset: 3fb6035cdc66 user: jgoecks date: 2013-01-03 20:54:50 summary: Enable BBI data provider to work even when chromosome naming conventions are mixed. affected #: 1 file <HgDiff 3fb6035cdc66:ddccdd0341f7 ['lib/galaxy/visualization/data_providers/genome.py']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: greg: Restrict discovery of repository dependencies to those occasions where the user chose to install them.
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/ddccdd0341f7/ changeset: ddccdd0341f7 user: greg date: 2013-01-03 20:48:26 summary: Restrict discovery of repository dependencies to those occasions where the user chose to install them. affected #: 2 files <HgDiff ddccdd0341f7:b3a3660604f7 ['lib/galaxy/util/shed_util.py']><HgDiff ddccdd0341f7:b3a3660604f7 ['lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: 3 new changesets
by Bitbucket 03 Jan '13

03 Jan '13

3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/11870bfc1795/ changeset: 11870bfc1795 user: james_taylor date: 2013-01-03 20:17:59 summary: styles: update to latest boostrap (2.2.2) and Font-Awesome (3.0) affected #: 51 files <HgDiff 11870bfc1795:8acc7bfa21a2 ['static/images/fonts/fontawesome-webfont.eot']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/images/fonts/fontawesome-webfont.ttf']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/images/fonts/fontawesome-webfont.woff']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/base.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/blue/base.css']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/accordion.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/alerts.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/bootstrap.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/breadcrumbs.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/button-groups.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/buttons.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/carousel.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/close.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/code.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/component-animations.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/dropdowns.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/forms.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/grid.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/hero-unit.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/labels-badges.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/layouts.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/media.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/mixins.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/modals.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/navbar.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/navs.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/pager.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/pagination.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/popovers.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/progress-bars.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/reset.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/responsive-1200px-min.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/responsive-767px-max.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/responsive-768px-979px.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/responsive-navbar.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/responsive-utilities.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/responsive.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/scaffolding.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/sprites.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/tables.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/thumbnails.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/tooltip.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/type.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/utilities.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/variables.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/bootstrap/wells.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/fontawesome/font-awesome.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/galaxy_bootstrap.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['static/june_2007_style/galaxy_bootstrap_variables.less']><HgDiff 11870bfc1795:8acc7bfa21a2 ['templates/root/history_common.mako']><HgDiff 11870bfc1795:8acc7bfa21a2 ['templates/root/index.mako']> https://bitbucket.org/galaxy/galaxy-central/changeset/4e20f8e109e6/ changeset: 4e20f8e109e6 user: james_taylor date: 2013-01-03 20:25:48 summary: admin: fix scrolling for admin left menu affected #: 1 file <HgDiff 4e20f8e109e6:11870bfc1795 ['templates/webapps/galaxy/admin/index.mako']> https://bitbucket.org/galaxy/galaxy-central/changeset/b3a3660604f7/ changeset: b3a3660604f7 user: james_taylor date: 2013-01-03 20:28:41 summary: styles: remove old font-awesome svg fonts affected #: 2 files <HgDiff b3a3660604f7:4e20f8e109e6 ['static/images/fonts/fontawesome-webfont.svg']><HgDiff b3a3660604f7:4e20f8e109e6 ['static/images/fonts/fontawesome-webfont.svgz']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: inithello: Functional tests for installing a repository that contains a workflow.
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/8acc7bfa21a2/ changeset: 8acc7bfa21a2 user: inithello date: 2013-01-03 20:31:09 summary: Functional tests for installing a repository that contains a workflow. affected #: 2 files <HgDiff 8acc7bfa21a2:5521bfd71d8b ['test/tool_shed/base/twilltestcase.py']><HgDiff 8acc7bfa21a2:5521bfd71d8b ['test/tool_shed/functional/test_1060_install_repository_with_workflow.py']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: inithello: Fix for installing repository without repository dependencies.
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/5521bfd71d8b/ changeset: 5521bfd71d8b user: inithello date: 2013-01-03 19:28:12 summary: Fix for installing repository without repository dependencies. affected #: 1 file <HgDiff 5521bfd71d8b:1d0fe5115b85 ['lib/galaxy/util/shed_util.py']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: greg: Fix for discovering repository dependencies for a tool shed repository being installed into Galaxy.
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/1d0fe5115b85/ changeset: 1d0fe5115b85 user: greg date: 2013-01-03 17:29:01 summary: Fix for discovering repository dependencies for a tool shed repository being installed into Galaxy. affected #: 2 files <HgDiff 1d0fe5115b85:86e6bf3b9934 ['lib/galaxy/util/shed_util.py']><HgDiff 1d0fe5115b85:86e6bf3b9934 ['lib/galaxy/util/shed_util_common.py']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Make Galaxy Q&A URL optional and disable by default.
by Bitbucket 03 Jan '13

03 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/86e6bf3b9934/ changeset: 86e6bf3b9934 user: jgoecks date: 2013-01-03 15:43:53 summary: Make Galaxy Q&A URL optional and disable by default. affected #: 3 files <HgDiff 86e6bf3b9934:7424f6498807 ['templates/webapps/community/base_panels.mako']><HgDiff 86e6bf3b9934:7424f6498807 ['templates/webapps/galaxy/base_panels.mako']><HgDiff 86e6bf3b9934:7424f6498807 ['universe_wsgi.ini.sample']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: greg: Fix for discovering all repository dependencies for a tool shed repository being installed into Galaxy.
by Bitbucket 02 Jan '13

02 Jan '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/7424f6498807/ changeset: 7424f6498807 user: greg date: 2013-01-02 23:02:25 summary: Fix for discovering all repository dependencies for a tool shed repository being installed into Galaxy. affected #: 3 files <HgDiff 7424f6498807:9ee9956888d7 ['lib/galaxy/tool_shed/install_manager.py']><HgDiff 7424f6498807:9ee9956888d7 ['lib/galaxy/util/shed_util.py']><HgDiff 7424f6498807:9ee9956888d7 ['lib/galaxy/util/shed_util_common.py']> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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