1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/f166886d97a0/
Changeset: f166886d97a0
User: jmchilton
Date: 2013-12-03 19:59:35
Summary: Another attempt to fix nosetests' handling of rods.py.
Further dirtying @dannon's code :(, sorry.
Affected #: 1 file
diff -r 1d75d75f9f82b9f9e7c19ef7d9d5df5e1565c962 -r f166886d97a0e7dcb926c2e5f83db8f52982748f lib/galaxy/objectstore/rods.py
--- a/lib/galaxy/objectstore/rods.py
+++ b/lib/galaxy/objectstore/rods.py
@@ -18,6 +18,9 @@
try:
import galaxy.eggs
galaxy.eggs.require( 'PyRods' )
+except Exception:
+ pass
+try:
import irods
except ImportError:
irods = None
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/1d75d75f9f82/
Changeset: 1d75d75f9f82
User: jmchilton
Date: 2013-12-03 18:54:56
Summary: Remove unused get_missing_tool_dependencies in install_and_test_tool_shed_repositories/base/test_db_util.py.
Looks to have been replaced by method with same name in install_and_test_tool_shed_repositories/functional_tests.py and would throw a NameError on repository_id if ever used.
Affected #: 1 file
diff -r 34d18fc63a7c9232dc23184094fef3f022e12036 -r 1d75d75f9f82b9f9e7c19ef7d9d5df5e1565c962 test/install_and_test_tool_shed_repositories/base/test_db_util.py
--- a/test/install_and_test_tool_shed_repositories/base/test_db_util.py
+++ b/test/install_and_test_tool_shed_repositories/base/test_db_util.py
@@ -30,11 +30,6 @@
model.ToolShedRepository.table.c.installed_changeset_revision == changeset_revision ) ) \
.one()
-def get_missing_tool_dependencies( repository ):
- return sa_session.query( model.ToolDependency ) \
- .filter( and_( model.ToolDependency.table.c.tool_shed_repository_id == repository_id,
- model.ToolDependency.table.c.status != model.ToolDependency.installation_status.INSTALLED ) ) \
- .all()
def get_private_role( user ):
for role in user.all_roles():
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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