galaxy-commits April 2013

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commit/galaxy-central: dannon: Fixes logout with remote_user=True (almost, logout.mako still uses the wrong template -- bug introduced in 56de0ee7932f)
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/aad18e2fd35d/ Changeset: aad18e2fd35d User: dannon Date: 2013-04-04 16:19:17 Summary: Fixes logout with remote_user=True (almost, logout.mako still uses the wrong template -- bug introduced in 56de0ee7932f) Affected #: 1 file diff -r 4317a158fe8c90b01155e2a6e98f2c9ec44b29b1 -r aad18e2fd35d0d323b8fe01d321dbb8a65bcc740 templates/webapps/galaxy/base_panels.mako --- a/templates/webapps/galaxy/base_panels.mako +++ b/templates/webapps/galaxy/base_panels.mako @@ -157,10 +157,7 @@ else: menu_options.append( [ _('Preferences'), h.url_for( controller='/user', action='index', cntrller='user' ), "galaxy_main" ] ) menu_options.append( [ 'Custom Builds', h.url_for( controller='/user', action='dbkeys' ), "galaxy_main" ] ) - if app.config.require_login: - logout_url = h.url_for( controller='/root', action='index', m_c='user', m_a='logout' ) - else: - logout_url = h.url_for( controller='/user', action='logout' ) + logout_url = h.url_for( controller='/user', action='logout' ) menu_options.append( [ 'Logout', logout_url, "_top" ] ) menu_options.append( None ) menu_options.append( [ _('Saved Histories'), h.url_for( controller='/history', action='list' ), "galaxy_main" ] ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: SAM/BAM data providers: add support for modifying CIGAR string so that CIGAR can be used, along with reference sequence, to infer read sequence. Parameter clean up as well.
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/4317a158fe8c/ Changeset: 4317a158fe8c User: jgoecks Date: 2013-04-04 16:16:53 Summary: SAM/BAM data providers: add support for modifying CIGAR string so that CIGAR can be used, along with reference sequence, to infer read sequence. Parameter clean up as well. Affected #: 4 files diff -r f3f8ae33a02a8eef02c5ecb876bfbcd67060fdc7 -r 4317a158fe8c90b01155e2a6e98f2c9ec44b29b1 lib/galaxy/visualization/data_providers/genome.py --- a/lib/galaxy/visualization/data_providers/genome.py +++ b/lib/galaxy/visualization/data_providers/genome.py @@ -2,7 +2,7 @@ Data providers for genome visualizations. """ -import os, sys +import os, sys, operator from math import ceil, log import pkg_resources pkg_resources.require( "bx-python" ) @@ -179,7 +179,7 @@ """ start, end = int( low ), int( high ) iterator = self.get_iterator( chrom, start, end, **kwargs ) - return self.process_data( iterator, start_val, max_vals, **kwargs ) + return self.process_data( iterator, start_val, max_vals, start=start, end=end, **kwargs ) def get_genome_data( self, chroms_info, **kwargs ): """ @@ -897,7 +897,7 @@ return None return data - def process_data( self, iterator, start_val=0, max_vals=None, **kwargs ): + def process_data( self, iterator, start_val=0, max_vals=None, ref_seq=None, start=0, **kwargs ): """ Returns a dict with the following attributes:: @@ -925,7 +925,86 @@ # No iterator indicates no reads. if iterator is None: return { 'data': [], 'message': None } - + + # + # Helper functions: + # + + def counter( s1, p1, s2, p2 ): + ''' + Count consecutive matches/mismatches between strings s1 and s2 + starting at p1 and p2, respectively. + ''' + + # Do initial comparison to determine whether to count matches or + # mismatches. + if s1[ p1 ] == s2[ p2 ]: + cmp_fn = operator.eq + match = True + else: + cmp_fn = operator.ne + match = False + + # Increment counts to move to next characters. + count = 1 + p1 += 1 + p2 += 1 + + # Count matches/mismatches. + while p1 < len( s1 ) and p2 < len( s2 ) and cmp_fn( s1[ p1 ], s2[ p2 ] ): + count += 1 + p1 += 1 + p2 += 1 + + return match, count + + def transform_cigar( read_seq, read_start, ref_seq, cigar ): + ''' + Returns a new cigar with =s and Xs replacing Ms; M operation is + imprecise because it can denote a sequence match or mismatch. + New cigar can be used with reference to reconstruct read sequence. + ''' + + if not ref_seq: + return read_seq, cigar + + # Set up position for reference, read. + ref_seq_pos = read_start - start + read_pos = 0 + + # Create new cigar. + new_cigar = [] + for op_tuple in cigar: + op, op_len = op_tuple + + # Op is index into string 'MIDNSHP=X' + if op == 0: # Match + # Transform Ms to =s and Xs. + new_op = [] + while read_pos < op_len: + match, count = counter( read_seq, read_pos, ref_seq, ref_seq_pos ) + if match: + new_op = 7 + else: + new_op = 8 + read_pos += count + ref_seq_pos += count + new_cigar.append( ( new_op, count ) ) + elif op == 1: # Insertion + new_cigar.append( op_tuple ) + elif op in [ 2, 3, 5, 6 ]: # Deletion, Skip, Soft Clipping or Padding + ref_seq_pos += op_len + new_cigar.append( op_tuple ) + elif op == 4: # Soft clipping + read_pos += op_len + new_cigar.append( op_tuple ) + elif op in [ 7, 8 ]: # Match or mismatch + read_pos += op_len + ref_seq_pos += op_len + new_cigar.append( op_tuple ) + + return new_cigar + # Decode strand from read flag. def decode_strand( read_flag, mask ): strand_flag = ( read_flag & mask == 0 ) @@ -934,7 +1013,11 @@ else: return "-" + # # Encode reads as list of lists. + # + if ref_seq: + ref_seq = ref_seq.upper() results = [] paired_pending = {} unmapped = 0 diff -r f3f8ae33a02a8eef02c5ecb876bfbcd67060fdc7 -r 4317a158fe8c90b01155e2a6e98f2c9ec44b29b1 lib/galaxy/visualization/genomes.py --- a/lib/galaxy/visualization/genomes.py +++ b/lib/galaxy/visualization/genomes.py @@ -296,7 +296,7 @@ return False - def reference( self, trans, dbkey, chrom, low, high, **kwargs ): + def reference( self, trans, dbkey, chrom, low, high ): """ Return reference data for a build. """ diff -r f3f8ae33a02a8eef02c5ecb876bfbcd67060fdc7 -r 4317a158fe8c90b01155e2a6e98f2c9ec44b29b1 lib/galaxy/webapps/galaxy/api/datasets.py --- a/lib/galaxy/webapps/galaxy/api/datasets.py +++ b/lib/galaxy/webapps/galaxy/api/datasets.py @@ -176,8 +176,16 @@ if max_vals is None: max_vals = data_provider.get_default_max_vals() + # Get reference sequence for region; this is used by providers for aligned reads. + ref_seq = None + if dataset.dbkey: + data_dict = self.app.genomes.reference( trans, dbkey=dataset.dbkey, chrom=chrom, low=low, high=high ) + if data_dict: + ref_seq = data_dict[ 'data' ] + # Get and return data from data_provider. - result = data_provider.get_data( chrom, int( low ), int( high ), int( start_val ), int( max_vals ), **kwargs ) + result = data_provider.get_data( chrom, int( low ), int( high ), int( start_val ), int( max_vals ), + ref_seq=ref_seq, **kwargs ) result.update( { 'dataset_type': data_provider.dataset_type, 'extra_info': extra_info } ) return result diff -r f3f8ae33a02a8eef02c5ecb876bfbcd67060fdc7 -r 4317a158fe8c90b01155e2a6e98f2c9ec44b29b1 lib/galaxy/webapps/galaxy/api/genomes.py --- a/lib/galaxy/webapps/galaxy/api/genomes.py +++ b/lib/galaxy/webapps/galaxy/api/genomes.py @@ -37,7 +37,7 @@ # Return info. rval = None if reference: - rval = self.app.genomes.reference( trans, dbkey=id, chrom=chrom, low=low, high=high, **kwd ) + rval = self.app.genomes.reference( trans, dbkey=id, chrom=chrom, low=low, high=high ) else: rval = self.app.genomes.chroms( trans, dbkey=id, num=num, chrom=chrom, low=low ) return rval Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: greg: Enhance the tool shed repositories API controller with a new method to return an ordered list of changeset revision hash strings that are associated with installable revisions of a repository defined by name and owner.
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/f3f8ae33a02a/ Changeset: f3f8ae33a02a User: greg Date: 2013-04-04 15:56:24 Summary: Enhance the tool shed repositories API controller with a new method to return an ordered list of changeset revision hash strings that are associated with installable revisions of a repository defined by name and owner. Affected #: 3 files diff -r e587038cd8cb5d29a3c664f3dedfef0f98491918 -r f3f8ae33a02a8eef02c5ecb876bfbcd67060fdc7 lib/galaxy/webapps/tool_shed/api/repositories.py --- a/lib/galaxy/webapps/tool_shed/api/repositories.py +++ b/lib/galaxy/webapps/tool_shed/api/repositories.py @@ -31,50 +31,27 @@ """RESTful controller for interactions with repositories in the Tool Shed.""" @web.expose_api_anonymous - def index( self, trans, deleted=False, **kwd ): + def get_ordered_installable_revisions( self, trans, name, owner, **kwd ): """ - GET /api/repositories - Displays a collection (list) of repositories. + GET /api/repository/get_ordered_installable_revisions + + :param name: the name of the Repository + :param owner: the owner of the Repository + + Returns the ordered list of changeset revision hash strings that are associated with installable revisions. As in the changelog, the + list is ordered oldest to newest. """ - # Example URL: http://localhost:9009/api/repositories - repository_dicts = [] - deleted = util.string_as_bool( deleted ) + # Example URL: http://localhost:9009/api/repositories/get_installable_revisions?name=add_c… try: - query = trans.sa_session.query( trans.app.model.Repository ) \ - .filter( trans.app.model.Repository.table.c.deleted == deleted ) \ - .order_by( trans.app.model.Repository.table.c.name ) \ - .all() - for repository in query: - repository_dict = repository.get_api_value( view='collection', value_mapper=default_repository_value_mapper( trans, repository ) ) - repository_dict[ 'url' ] = web.url_for( controller='repositories', - action='show', - id=trans.security.encode_id( repository.id ) ) - repository_dicts.append( repository_dict ) - return repository_dicts + # Get the repository information. + repository = suc.get_repository_by_name_and_owner( trans.app, name, owner ) + encoded_repository_id = trans.security.encode_id( repository.id ) + repo_dir = repository.repo_path( trans.app ) + repo = hg.repository( suc.get_configured_ui(), repo_dir ) + ordered_installable_revisions = suc.get_ordered_downloadable_changeset_revisions( repository, repo ) + return ordered_installable_revisions except Exception, e: - message = "Error in the Tool Shed repositories API in index: %s" % str( e ) - log.error( message, exc_info=True ) - trans.response.status = 500 - return message - - @web.expose_api_anonymous - def show( self, trans, id, **kwd ): - """ - GET /api/repositories/{encoded_repository_id} - Returns information about a repository in the Tool Shed. - - :param id: the encoded id of the Repository object - """ - # Example URL: http://localhost:9009/api/repositories/f9cad7b01a472135 - try: - repository = suc.get_repository_in_tool_shed( trans, id ) - repository_dict = repository.get_api_value( view='element', value_mapper=default_repository_value_mapper( trans, repository ) ) - repository_dict[ 'url' ] = web.url_for( controller='repositories', - action='show', - id=trans.security.encode_id( repository.id ) ) - return repository_dict - except Exception, e: - message = "Error in the Tool Shed repositories API in show: %s" % str( e ) + message = "Error in the Tool Shed repositories API in get_ordered_installable_revisions: %s" % str( e ) log.error( message, exc_info=True ) trans.response.status = 500 return message @@ -103,7 +80,7 @@ "url": "/api/repositories/f9cad7b01a472135", "user_id": "f9cad7b01a472135" } - - a dictionary defining the Repsoitory revision (RepositoryMetadata). For example: + - a dictionary defining the Repository revision (RepositoryMetadata). For example: { "changeset_revision": "3a08cc21466f", "downloadable": true, @@ -171,3 +148,52 @@ log.error( message, exc_info=True ) trans.response.status = 500 return message + + @web.expose_api_anonymous + def index( self, trans, deleted=False, **kwd ): + """ + GET /api/repositories + Displays a collection (list) of repositories. + """ + # Example URL: http://localhost:9009/api/repositories + repository_dicts = [] + deleted = util.string_as_bool( deleted ) + try: + query = trans.sa_session.query( trans.app.model.Repository ) \ + .filter( trans.app.model.Repository.table.c.deleted == deleted ) \ + .order_by( trans.app.model.Repository.table.c.name ) \ + .all() + for repository in query: + repository_dict = repository.get_api_value( view='collection', value_mapper=default_repository_value_mapper( trans, repository ) ) + repository_dict[ 'url' ] = web.url_for( controller='repositories', + action='show', + id=trans.security.encode_id( repository.id ) ) + repository_dicts.append( repository_dict ) + return repository_dicts + except Exception, e: + message = "Error in the Tool Shed repositories API in index: %s" % str( e ) + log.error( message, exc_info=True ) + trans.response.status = 500 + return message + + @web.expose_api_anonymous + def show( self, trans, id, **kwd ): + """ + GET /api/repositories/{encoded_repository_id} + Returns information about a repository in the Tool Shed. + + :param id: the encoded id of the Repository object + """ + # Example URL: http://localhost:9009/api/repositories/f9cad7b01a472135 + try: + repository = suc.get_repository_in_tool_shed( trans, id ) + repository_dict = repository.get_api_value( view='element', value_mapper=default_repository_value_mapper( trans, repository ) ) + repository_dict[ 'url' ] = web.url_for( controller='repositories', + action='show', + id=trans.security.encode_id( repository.id ) ) + return repository_dict + except Exception, e: + message = "Error in the Tool Shed repositories API in show: %s" % str( e ) + log.error( message, exc_info=True ) + trans.response.status = 500 + return message diff -r e587038cd8cb5d29a3c664f3dedfef0f98491918 -r f3f8ae33a02a8eef02c5ecb876bfbcd67060fdc7 lib/galaxy/webapps/tool_shed/buildapp.py --- a/lib/galaxy/webapps/tool_shed/buildapp.py +++ b/lib/galaxy/webapps/tool_shed/buildapp.py @@ -79,7 +79,8 @@ webapp.mapper.resource( 'repository', 'repositories', controller='repositories', - collection={ 'get_repository_revision_install_info' : 'GET' }, + collection={ 'get_repository_revision_install_info' : 'GET', + 'get_ordered_installable_revisions' : 'GET' }, name_prefix='repository_', path_prefix='/api', parent_resources=dict( member_name='repository', collection_name='repositories' ) ) diff -r e587038cd8cb5d29a3c664f3dedfef0f98491918 -r f3f8ae33a02a8eef02c5ecb876bfbcd67060fdc7 lib/tool_shed/util/shed_util_common.py --- a/lib/tool_shed/util/shed_util_common.py +++ b/lib/tool_shed/util/shed_util_common.py @@ -1121,6 +1121,7 @@ def set_prior_installation_required( repository, required_repository ): """Return True if the received required_repository must be installed before the received repository.""" + # This method is called only from Galaxy when rendering repository dependencies for an installed tool shed repository. required_repository_tup = [ required_repository.tool_shed, required_repository.name, required_repository.owner, required_repository.changeset_revision ] # Get the list of repository dependency tuples associated with the received repository where prior_installation_required is True. required_rd_tups_that_must_be_installed = repository.requires_prior_installation_of Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: 2 new changesets
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/1014dbf6256a/ Changeset: 1014dbf6256a User: Kyle Ellrott Date: 2013-04-02 21:36:14 Summary: Adding API ID values to HDA show_params page Affected #: 1 file diff -r 715dc4f4c8e218f50d08eb81dc1b3ef0453860a5 -r 1014dbf6256a44f77ed1a029193fa6d1f05bac52 templates/show_params.mako --- a/templates/show_params.mako +++ b/templates/show_params.mako @@ -116,6 +116,7 @@ <tr><td>Tool Standard Output:</td><td><a href="${h.url_for( controller='dataset', action='stdout')}">stdout</a></td></tr><tr><td>Tool Standard Error:</td><td><a href="${h.url_for( controller='dataset', action='stderr')}">stderr</a></td></tr><tr><td>Tool Exit Code:</td><td>${job.exit_code | h}</td></tr> + <tr><td>API ID:</td><td>${trans.security.encode_id(hda.id)}</td></tr> %if trans.user_is_admin() or trans.app.config.expose_dataset_path: <tr><td>Full Path:</td><td>${hda.file_name | h}</td></tr> %endif https://bitbucket.org/galaxy/galaxy-central/commits/e587038cd8cb/ Changeset: e587038cd8cb User: jgoecks Date: 2013-04-04 15:22:58 Summary: Merged in kellrott/galaxy-central (pull request #148) Adding API ID values to HDA show_params page Affected #: 1 file diff -r c43fff394fd02f868d3c8c669344c0f0870fdaa9 -r e587038cd8cb5d29a3c664f3dedfef0f98491918 templates/show_params.mako --- a/templates/show_params.mako +++ b/templates/show_params.mako @@ -116,6 +116,7 @@ <tr><td>Tool Standard Output:</td><td><a href="${h.url_for( controller='dataset', action='stdout')}">stdout</a></td></tr><tr><td>Tool Standard Error:</td><td><a href="${h.url_for( controller='dataset', action='stderr')}">stderr</a></td></tr><tr><td>Tool Exit Code:</td><td>${job.exit_code | h}</td></tr> + <tr><td>API ID:</td><td>${trans.security.encode_id(hda.id)}</td></tr> %if trans.user_is_admin() or trans.app.config.expose_dataset_path: <tr><td>Full Path:</td><td>${hda.file_name | h}</td></tr> %endif Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: 3 new changesets
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/16e5c3e19479/ Changeset: 16e5c3e19479 User: raj76 Date: 2013-04-01 22:59:55 Summary: Changed the logic in the trinity wrapper to handle stranded/un-stranded ran-seq data. Got the wrapper working with the latest trinity package. Affected #: 1 file diff -r b167cc662167404c49b3ff0a9535f448669d93d5 -r 16e5c3e1947986102b11fe050691c722ba923696 tools/ngs_rna/trinity_all.xml --- a/tools/ngs_rna/trinity_all.xml +++ b/tools/ngs_rna/trinity_all.xml @@ -20,9 +20,6 @@ #else: --seqType fq #end if - #if $inputs.library_type != 'None': - --SS_lib_type $inputs.library_type - #end if #else: --single $inputs.input #if $inputs.input.ext == 'fa': @@ -30,15 +27,16 @@ #else: --seqType fq #end if - #if $inputs.library_type != 'None': - --SS_lib_type $inputs.library_type - #end if + #end if + + #if $strand.is_strand_specific == "yes": + --SS_lib_type $strand.library_type #end if - --kmer_method meryl - + --JM 100G --full_cleanup + ## CPU and butterfly options. - --CPU 4 --bfly_opts "-V 10 --stderr" > $trinity_log 2>&1 + --CPU 6 --bfly_opts "-V 10 --stderr" > $trinity_log 2>&1 </command><inputs><conditional name="inputs"> @@ -49,22 +47,28 @@ <when value="paired"><param format="fasta,fastq" name="left_input" type="data" label="Left/Forward strand reads" help=""/><param format="fasta,fastq" name="right_input" type="data" label="Right/Reverse strand reads" help=""/> - <param name="library_type" type="select" label="Strand-specific Library Type"> - <option value="None">None</option> - <option value="FR">FR</option> - <option value="RF">RF</option> - </param><param name="paired_fragment_length" type="integer" value="300" min="1" label="Paired Fragment Length" help="Maximum length expected between fragment pairs"/></when><when value="single"><param format="fasta,fastq" name="input" type="data" label="Single-end reads" help=""/> - <param name="library_type" type="select" label="Strand-specific Library Type"> - <option value="None">None</option> - <option value="F">F</option> - <option value="R">R</option> - </param></when></conditional> + <conditional name="strand"> + <param name="is_strand_specific" type="select" label="Is it strand specific data?" help=""> + <option value="no">No</option> + <option value="yes">Yes</option> + </param> + <when value="no"> + </when> + <when value="yes"> + <param name="library_type" type="select" label="Strand-specific Library Type"> + <option value="FR">Forward-Reverse</option> + <option value="RF">Reverse-Forward</option> + <option value="F">Forward</option> + <option value="R">Reverse</option> + </param> + </when> + </conditional><conditional name="additional_params"><param name="use_additional" type="select" label="Use Additional Params?"><option value="no">No</option> @@ -79,7 +83,7 @@ </inputs><outputs><data format="txt" name="trinity_log" label="${tool.name} on ${on_string}: log" /> - <data format="fasta" name="assembled_transcripts" label="${tool.name} on ${on_string}: Assembled Transcripts" from_work_dir="trinity_out_dir/Trinity.fasta"/> + <data format="fasta" name="assembled_transcripts" label="${tool.name} on ${on_string}: Assembled Transcripts" from_work_dir="trinity_out_dir.Trinity.fasta"/></outputs><tests></tests> https://bitbucket.org/galaxy/galaxy-central/commits/663cc29efad9/ Changeset: 663cc29efad9 User: raj76 Date: 2013-04-04 07:16:09 Summary: Removed --full_cleanup as galaxy deletes the job's working directory. Changed the memory for Jellyfish to 10G from 100G. Probably better as a default value. Affected #: 1 file diff -r 16e5c3e1947986102b11fe050691c722ba923696 -r 663cc29efad9ec1a54bfc108b6be7e34a1dc6b17 tools/ngs_rna/trinity_all.xml --- a/tools/ngs_rna/trinity_all.xml +++ b/tools/ngs_rna/trinity_all.xml @@ -33,7 +33,7 @@ --SS_lib_type $strand.library_type #end if - --JM 100G --full_cleanup + --JM 10G ## CPU and butterfly options. --CPU 6 --bfly_opts "-V 10 --stderr" > $trinity_log 2>&1 @@ -83,7 +83,7 @@ </inputs><outputs><data format="txt" name="trinity_log" label="${tool.name} on ${on_string}: log" /> - <data format="fasta" name="assembled_transcripts" label="${tool.name} on ${on_string}: Assembled Transcripts" from_work_dir="trinity_out_dir.Trinity.fasta"/> + <data format="fasta" name="assembled_transcripts" label="${tool.name} on ${on_string}: Assembled Transcripts" from_work_dir="trinity_out_dir/Trinity.fasta"/></outputs><tests></tests> https://bitbucket.org/galaxy/galaxy-central/commits/c43fff394fd0/ Changeset: c43fff394fd0 User: jgoecks Date: 2013-04-04 15:13:18 Summary: Merged in raj76/galaxy-central-tools (pull request #147) Changed the logic in the trinity wrapper to handle stranded/un-stranded ran-seq data. Got the wrapper working with the latest trinity package. Affected #: 1 file diff -r c7fae25b9fa35533afb15df6a6fdb47d677f8110 -r c43fff394fd02f868d3c8c669344c0f0870fdaa9 tools/ngs_rna/trinity_all.xml --- a/tools/ngs_rna/trinity_all.xml +++ b/tools/ngs_rna/trinity_all.xml @@ -20,9 +20,6 @@ #else: --seqType fq #end if - #if $inputs.library_type != 'None': - --SS_lib_type $inputs.library_type - #end if #else: --single $inputs.input #if $inputs.input.ext == 'fa': @@ -30,15 +27,16 @@ #else: --seqType fq #end if - #if $inputs.library_type != 'None': - --SS_lib_type $inputs.library_type - #end if + #end if + + #if $strand.is_strand_specific == "yes": + --SS_lib_type $strand.library_type #end if - --kmer_method meryl - + --JM 10G + ## CPU and butterfly options. - --CPU 4 --bfly_opts "-V 10 --stderr" > $trinity_log 2>&1 + --CPU 6 --bfly_opts "-V 10 --stderr" > $trinity_log 2>&1 </command><inputs><conditional name="inputs"> @@ -49,22 +47,28 @@ <when value="paired"><param format="fasta,fastq" name="left_input" type="data" label="Left/Forward strand reads" help=""/><param format="fasta,fastq" name="right_input" type="data" label="Right/Reverse strand reads" help=""/> - <param name="library_type" type="select" label="Strand-specific Library Type"> - <option value="None">None</option> - <option value="FR">FR</option> - <option value="RF">RF</option> - </param><param name="paired_fragment_length" type="integer" value="300" min="1" label="Paired Fragment Length" help="Maximum length expected between fragment pairs"/></when><when value="single"><param format="fasta,fastq" name="input" type="data" label="Single-end reads" help=""/> - <param name="library_type" type="select" label="Strand-specific Library Type"> - <option value="None">None</option> - <option value="F">F</option> - <option value="R">R</option> - </param></when></conditional> + <conditional name="strand"> + <param name="is_strand_specific" type="select" label="Is it strand specific data?" help=""> + <option value="no">No</option> + <option value="yes">Yes</option> + </param> + <when value="no"> + </when> + <when value="yes"> + <param name="library_type" type="select" label="Strand-specific Library Type"> + <option value="FR">Forward-Reverse</option> + <option value="RF">Reverse-Forward</option> + <option value="F">Forward</option> + <option value="R">Reverse</option> + </param> + </when> + </conditional><conditional name="additional_params"><param name="use_additional" type="select" label="Use Additional Params?"><option value="no">No</option> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: 2 new changesets
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/7ac5c2aca2b7/ Changeset: 7ac5c2aca2b7 User: jmchilton Date: 2013-03-24 17:36:16 Summary: For task parallelism if no shared_inputs attribute is defined just assume all variables that are not being split are being shared. I cannot think of a good reason not to do this. Affected #: 1 file diff -r f6743b36ce0a54e49acf06d09e03d01584d55514 -r 7ac5c2aca2b7024f6d1444ab46d562bb838fed6d lib/galaxy/jobs/splitters/multi.py --- a/lib/galaxy/jobs/splitters/multi.py +++ b/lib/galaxy/jobs/splitters/multi.py @@ -19,8 +19,10 @@ split_inputs = [x.strip() for x in split_inputs.split(",")] shared_inputs=parallel_settings.get("shared_inputs") + auto_shared_inputs = False if shared_inputs is None: shared_inputs = [] + auto_shared_inputs = True else: shared_inputs = [x.strip() for x in shared_inputs.split(",")] illegal_inputs = [x for x in shared_inputs if x in split_inputs] @@ -45,6 +47,8 @@ type_to_input_map.setdefault(input.dataset.datatype, []).append(input.name) elif input.name in shared_inputs: pass # pass original file name + elif auto_shared_inputs: + shared_inputs.append(input.name) else: log_error = "The input '%s' does not define a method for implementing parallelism" % str(input.name) log.exception(log_error) https://bitbucket.org/galaxy/galaxy-central/commits/c7fae25b9fa3/ Changeset: c7fae25b9fa3 User: dannon Date: 2013-04-04 14:58:16 Summary: Merged in jmchilton/galaxy-central-library-refactoring (pull request #142) Small Task Splitting Simpliciation Affected #: 1 file diff -r b7a05dcaa5211ac29af0d3aa201a526e51eb0bfa -r c7fae25b9fa35533afb15df6a6fdb47d677f8110 lib/galaxy/jobs/splitters/multi.py --- a/lib/galaxy/jobs/splitters/multi.py +++ b/lib/galaxy/jobs/splitters/multi.py @@ -19,8 +19,10 @@ split_inputs = [x.strip() for x in split_inputs.split(",")] shared_inputs=parallel_settings.get("shared_inputs") + auto_shared_inputs = False if shared_inputs is None: shared_inputs = [] + auto_shared_inputs = True else: shared_inputs = [x.strip() for x in shared_inputs.split(",")] illegal_inputs = [x for x in shared_inputs if x in split_inputs] @@ -45,6 +47,8 @@ type_to_input_map.setdefault(input.dataset.datatype, []).append(input.name) elif input.name in shared_inputs: pass # pass original file name + elif auto_shared_inputs: + shared_inputs.append(input.name) else: log_error = "The input '%s' does not define a method for implementing parallelism" % str(input.name) log.exception(log_error) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: 3 new changesets
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/62d0924f163b/ Changeset: 62d0924f163b User: nsoranzo Date: 2013-03-06 12:37:08 Summary: Fix file extension determination Extension was determined uncorrectly for filenames with more than 1 dot Affected #: 1 file diff -r 3a3eab0b0adbda30e72fdda0c5de899728bcd5e6 -r 62d0924f163b8731adaf582056587c0c4f415a7b tools/data_source/upload.py --- a/tools/data_source/upload.py +++ b/tools/data_source/upload.py @@ -247,7 +247,7 @@ #binary_ok = False parts = dataset.name.split( "." ) if len( parts ) > 1: - ext = parts[1].strip().lower() + ext = parts[-1].strip().lower() if not Binary.is_ext_unsniffable(ext): file_err( 'The uploaded binary file contains inappropriate content', dataset, json_file ) return https://bitbucket.org/galaxy/galaxy-central/commits/d6f866cbf12d/ Changeset: d6f866cbf12d User: nsoranzo Date: 2013-03-06 12:39:04 Summary: Add generic ASN.1 text and binary datatypes Affected #: 3 files diff -r 62d0924f163b8731adaf582056587c0c4f415a7b -r d6f866cbf12d0242089fbbbfb799fb20600441cf datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample +++ b/datatypes_conf.xml.sample @@ -3,6 +3,8 @@ <registration converters_path="lib/galaxy/datatypes/converters" display_path="display_applications"><datatype extension="ab1" type="galaxy.datatypes.binary:Ab1" mimetype="application/octet-stream" display_in_upload="true"/><datatype extension="afg" type="galaxy.datatypes.assembly:Amos" display_in_upload="false"/> + <datatype extension="asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" display_in_upload="true" /> + <datatype extension="asn1-binary" type="galaxy.datatypes.binary:GenericAsn1Binary" mimetype="application/octet-stream" display_in_upload="true" /><datatype extension="axt" type="galaxy.datatypes.sequence:Axt" display_in_upload="true"/><datatype extension="fli" type="galaxy.datatypes.tabular:FeatureLocationIndex" display_in_upload="false"/><datatype extension="bam" type="galaxy.datatypes.binary:Bam" mimetype="application/octet-stream" display_in_upload="true"> diff -r 62d0924f163b8731adaf582056587c0c4f415a7b -r d6f866cbf12d0242089fbbbfb799fb20600441cf lib/galaxy/datatypes/binary.py --- a/lib/galaxy/datatypes/binary.py +++ b/lib/galaxy/datatypes/binary.py @@ -85,6 +85,12 @@ Binary.register_unsniffable_binary_ext("ab1") +class GenericAsn1Binary( Binary ): + """Class for generic ASN.1 binary format""" + file_ext = "asn1-binary" + +Binary.register_unsniffable_binary_ext("asn1-binary") + class Bam( Binary ): """Class describing a BAM binary file""" file_ext = "bam" diff -r 62d0924f163b8731adaf582056587c0c4f415a7b -r d6f866cbf12d0242089fbbbfb799fb20600441cf lib/galaxy/datatypes/data.py --- a/lib/galaxy/datatypes/data.py +++ b/lib/galaxy/datatypes/data.py @@ -739,6 +739,10 @@ f.close() split = classmethod(split) +class GenericAsn1( Text ): + """Class for generic ASN.1 text format""" + file_ext = 'asn1' + class LineCount( Text ): """ Dataset contains a single line with a single integer that denotes the https://bitbucket.org/galaxy/galaxy-central/commits/b7a05dcaa521/ Changeset: b7a05dcaa521 User: dannon Date: 2013-04-04 14:41:54 Summary: Merged in nsoranzo/galaxy-central (pull request #135) Add generic ASN.1 text and binary datatypes Affected #: 4 files diff -r 740d8a84d0abeaf28c423fe98b8bee121ba92934 -r b7a05dcaa5211ac29af0d3aa201a526e51eb0bfa datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample +++ b/datatypes_conf.xml.sample @@ -3,6 +3,8 @@ <registration converters_path="lib/galaxy/datatypes/converters" display_path="display_applications"><datatype extension="ab1" type="galaxy.datatypes.binary:Ab1" mimetype="application/octet-stream" display_in_upload="true"/><datatype extension="afg" type="galaxy.datatypes.assembly:Amos" display_in_upload="false"/> + <datatype extension="asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" display_in_upload="true" /> + <datatype extension="asn1-binary" type="galaxy.datatypes.binary:GenericAsn1Binary" mimetype="application/octet-stream" display_in_upload="true" /><datatype extension="axt" type="galaxy.datatypes.sequence:Axt" display_in_upload="true"/><datatype extension="fli" type="galaxy.datatypes.tabular:FeatureLocationIndex" display_in_upload="false"/><datatype extension="bam" type="galaxy.datatypes.binary:Bam" mimetype="application/octet-stream" display_in_upload="true"> diff -r 740d8a84d0abeaf28c423fe98b8bee121ba92934 -r b7a05dcaa5211ac29af0d3aa201a526e51eb0bfa lib/galaxy/datatypes/binary.py --- a/lib/galaxy/datatypes/binary.py +++ b/lib/galaxy/datatypes/binary.py @@ -85,6 +85,12 @@ Binary.register_unsniffable_binary_ext("ab1") +class GenericAsn1Binary( Binary ): + """Class for generic ASN.1 binary format""" + file_ext = "asn1-binary" + +Binary.register_unsniffable_binary_ext("asn1-binary") + class Bam( Binary ): """Class describing a BAM binary file""" file_ext = "bam" diff -r 740d8a84d0abeaf28c423fe98b8bee121ba92934 -r b7a05dcaa5211ac29af0d3aa201a526e51eb0bfa lib/galaxy/datatypes/data.py --- a/lib/galaxy/datatypes/data.py +++ b/lib/galaxy/datatypes/data.py @@ -739,6 +739,10 @@ f.close() split = classmethod(split) +class GenericAsn1( Text ): + """Class for generic ASN.1 text format""" + file_ext = 'asn1' + class LineCount( Text ): """ Dataset contains a single line with a single integer that denotes the diff -r 740d8a84d0abeaf28c423fe98b8bee121ba92934 -r b7a05dcaa5211ac29af0d3aa201a526e51eb0bfa tools/data_source/upload.py --- a/tools/data_source/upload.py +++ b/tools/data_source/upload.py @@ -247,7 +247,7 @@ #binary_ok = False parts = dataset.name.split( "." ) if len( parts ) > 1: - ext = parts[1].strip().lower() + ext = parts[-1].strip().lower() if not Binary.is_ext_unsniffable(ext): file_err( 'The uploaded binary file contains inappropriate content', dataset, json_file ) return Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: 2 new changesets
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/6c234a64e7b2/ Changeset: 6c234a64e7b2 Branch: stable User: natefoo Date: 2013-04-04 14:20:46 Summary: Fix bug in the sample advanced job configuration noticed by Anthonius deBoer. Affected #: 1 file diff -r da2d6ee29f309454f35d9f8cf9d6eb837c87a7dd -r 6c234a64e7b287565c968f128b047aabec78ec50 job_conf.xml.sample_advanced --- a/job_conf.xml.sample_advanced +++ b/job_conf.xml.sample_advanced @@ -6,7 +6,7 @@ --><plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/><plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" workers="2"/> - <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAARunner"/> + <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/><plugin id="lwr" type="runner" load="galaxy.jobs.runners.lwr.LwrJobRunner" /><plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" /><plugin id="condor" type="runner" load="galaxy.jobs.runners.condor:CondorJobRunner" /> https://bitbucket.org/galaxy/galaxy-central/commits/740d8a84d0ab/ Changeset: 740d8a84d0ab User: natefoo Date: 2013-04-04 14:21:09 Summary: Merge stable. Affected #: 1 file diff -r 7de5ccb2b253d24dc3d9cc5b681ee3662d57d565 -r 740d8a84d0abeaf28c423fe98b8bee121ba92934 job_conf.xml.sample_advanced --- a/job_conf.xml.sample_advanced +++ b/job_conf.xml.sample_advanced @@ -6,7 +6,7 @@ --><plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/><plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" workers="2"/> - <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAARunner"/> + <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/><plugin id="lwr" type="runner" load="galaxy.jobs.runners.lwr.LwrJobRunner" /><plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" /><plugin id="condor" type="runner" load="galaxy.jobs.runners.condor:CondorJobRunner" /> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: dannon: Workflow Editor: Fix for last-remaining-workflow-output-unremovable. Clarify declaration (actually a bug, one was undefined, one was false).
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/7de5ccb2b253/ Changeset: 7de5ccb2b253 User: dannon Date: 2013-04-03 23:46:19 Summary: Workflow Editor: Fix for last-remaining-workflow-output-unremovable. Clarify declaration (actually a bug, one was undefined, one was false). Affected #: 1 file diff -r dca01d90de51a758859ee0feec69cde38592bb2c -r 7de5ccb2b253d24dc3d9cc5b681ee3662d57d565 static/scripts/galaxy.workflow_editor.canvas.js --- a/static/scripts/galaxy.workflow_editor.canvas.js +++ b/static/scripts/galaxy.workflow_editor.canvas.js @@ -491,7 +491,8 @@ }, rectify_workflow_outputs : function() { // Find out if we're using workflow_outputs or not. - var using_workflow_outputs, has_existing_pjas = false; + var using_workflow_outputs = false; + var has_existing_pjas = false; $.each( this.nodes, function ( k, node ) { if (node.workflow_outputs && node.workflow_outputs.length > 0){ using_workflow_outputs = true; @@ -517,7 +518,7 @@ pjas_to_rem.push(pja_id); } }); - if (pjas_to_rem.length > 0 && node == workflow.active_node) { + if (pjas_to_rem.length > 0 ) { $.each(pjas_to_rem, function(i, pja_name){ node_changed = true; delete node.post_job_actions[pja_name]; Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: carlfeberhard: re-run handlebars on available templates; pack scripts
by commits-noreply＠bitbucket.org 04 Apr '13

04 Apr '13

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/dca01d90de51/ Changeset: dca01d90de51 User: carlfeberhard Date: 2013-04-03 23:20:01 Summary: re-run handlebars on available templates; pack scripts Affected #: 47 files diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/libs/handlebars.runtime.js --- a/static/scripts/packed/libs/handlebars.runtime.js +++ b/static/scripts/packed/libs/handlebars.runtime.js @@ -1,1 +1,1 @@ -var Handlebars={};Handlebars.VERSION="1.0.beta.6";Handlebars.helpers={};Handlebars.partials={};Handlebars.registerHelper=function(b,c,a){if(a){c.not=a}this.helpers[b]=c};Handlebars.registerPartial=function(a,b){this.partials[a]=b};Handlebars.registerHelper("helperMissing",function(a){if(arguments.length===2){return undefined}else{throw new Error("Could not find property '"+a+"'")}});var toString=Object.prototype.toString,functionType="[object Function]";Handlebars.registerHelper("blockHelperMissing",function(f,d){var a=d.inverse||function(){},h=d.fn;var c="";var g=toString.call(f);if(g===functionType){f=f.call(this)}if(f===true){return h(this)}else{if(f===false||f==null){return a(this)}else{if(g==="[object Array]"){if(f.length>0){for(var e=0,b=f.length;e<b;e++){c=c+h(f[e])}}else{c=a(this)}return c}else{return h(f)}}}});Handlebars.registerHelper("each",function(f,d){var g=d.fn,a=d.inverse;var c="";if(f&&f.length>0){for(var e=0,b=f.length;e<b;e++){c=c+g(f[e])}}else{c=a(this)}return c});Handlebars.registerHelper("if",function(b,a){var c=toString.call(b);if(c===functionType){b=b.call(this)}if(!b||Handlebars.Utils.isEmpty(b)){return a.inverse(this)}else{return a.fn(this)}});Handlebars.registerHelper("unless",function(c,b){var d=b.fn,a=b.inverse;b.fn=a;b.inverse=d;return Handlebars.helpers["if"].call(this,c,b)});Handlebars.registerHelper("with",function(b,a){return a.fn(b)});Handlebars.registerHelper("log",function(a){Handlebars.log(a)});Handlebars.Exception=function(b){var a=Error.prototype.constructor.apply(this,arguments);for(var c in a){if(a.hasOwnProperty(c)){this[c]=a[c]}}this.message=a.message};Handlebars.Exception.prototype=new Error;Handlebars.SafeString=function(a){this.string=a};Handlebars.SafeString.prototype.toString=function(){return this.string.toString()};(function(){var c={"<":"<",">":">",'"':""","'":"'","`":"`"};var d=/&(?!\w+;)|[<>"'`]/g;var b=/[&<>"'`]/;var a=function(e){return c[e]||"&"};Handlebars.Utils={escapeExpression:function(e){if(e instanceof Handlebars.SafeString){return e.toString()}else{if(e==null||e===false){return""}}if(!b.test(e)){return e}return e.replace(d,a)},isEmpty:function(e){if(typeof e==="undefined"){return true}else{if(e===null){return true}else{if(e===false){return true}else{if(Object.prototype.toString.call(e)==="[object Array]"&&e.length===0){return true}else{return false}}}}}}})();Handlebars.VM={template:function(a){var b={escapeExpression:Handlebars.Utils.escapeExpression,invokePartial:Handlebars.VM.invokePartial,programs:[],program:function(d,e,f){var c=this.programs[d];if(f){return Handlebars.VM.program(e,f)}else{if(c){return c}else{c=this.programs[d]=Handlebars.VM.program(e);return c}}},programWithDepth:Handlebars.VM.programWithDepth,noop:Handlebars.VM.noop};return function(d,c){c=c||{};return a.call(b,Handlebars,d,c.helpers,c.partials,c.data)}},programWithDepth:function(b,d,c){var a=Array.prototype.slice.call(arguments,2);return function(f,e){e=e||{};return b.apply(this,[f,e.data||d].concat(a))}},program:function(a,b){return function(d,c){c=c||{};return a(d,c.data||b)}},noop:function(){return""},invokePartial:function(a,b,d,e,c,f){options={helpers:e,partials:c,data:f};if(a===undefined){throw new Handlebars.Exception("The partial "+b+" could not be found")}else{if(a instanceof Function){return a(d,options)}else{if(!Handlebars.compile){throw 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B="",C,A;B+="\n";A=q.warningmessagesmall;if(A){C=A.call(E,{hash:{},inverse:p.noop,fn:p.program(3,m,D)})}else{C=E.warningmessagesmall;C=typeof C===e?C():C}if(!q.warningmessagesmall){C=c.call(E,C,{hash:{},inverse:p.noop,fn:p.program(3,m,D)})}if(C||C===0){B+=C}B+="\n";return B}function m(E,D){var B="",C,A;B+="\n ";A=q.local;if(A){C=A.call(E,{hash:{},inverse:p.noop,fn:p.program(4,l,D)})}else{C=E.local;C=typeof C===e?C():C}if(!q.local){C=c.call(E,C,{hash:{},inverse:p.noop,fn:p.program(4,l,D)})}if(C||C===0){B+=C}B+="\n ";C=E.urls;C=C==null||C===false?C:C.undelete;C=q["if"].call(E,C,{hash:{},inverse:p.noop,fn:p.program(6,j,D)});if(C||C===0){B+=C}B+="\n";return B}function l(B,A){return"This dataset has been deleted."}function j(E,D){var B="",C,A;B+="\n ";B+='\n Click <a href="';C=E.urls;C=C==null||C===false?C:C.undelete;C=typeof C===e?C():C;B+=d(C)+'" class="historyItemUndelete" id="historyItemUndeleter-';A=q.id;if(A){C=A.call(E,{hash:{}})}else{C=E.id;C=typeof C===e?C():C}B+=d(C)+'"\n 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A;A=q.unless.call(C,C.purged,{hash:{},inverse:p.noop,fn:p.program(2,n,B),data:B});if(A||A===0){return A}else{return""}}function n(E,D){var A="",C,B;A+="\n";B={hash:{},inverse:p.noop,fn:p.program(3,m,D),data:D};if(C=q.warningmessagesmall){C=C.call(E,B)}else{C=E.warningmessagesmall;C=typeof C===e?C.apply(E):C}if(!q.warningmessagesmall){C=c.call(E,C,B)}if(C||C===0){A+=C}A+="\n";return A}function m(F,E){var A="",D,C,B;A+="\n ";B={hash:{},inverse:p.noop,fn:p.program(4,l,E),data:E};if(D=q.local){D=D.call(F,B)}else{D=F.local;D=typeof D===e?D.apply(F):D}if(!q.local){D=c.call(F,D,B)}if(D||D===0){A+=D}A+="\n ";C=q["if"].call(F,((D=F.urls),D==null||D===false?D:D.undelete),{hash:{},inverse:p.noop,fn:p.program(6,j,E),data:E});if(C||C===0){A+=C}A+="\n";return A}function l(B,A){return"This dataset has been deleted."}function j(E,D){var A="",C,B;A+='\n \n Click <a href="'+d(((C=((C=E.urls),C==null||C===false?C:C.undelete)),typeof C===e?C.apply(E):C))+'" class="historyItemUndelete" id="historyItemUndeleter-';if(B=q.id){B=B.call(E,{hash:{},data:D})}else{B=E.id;B=typeof B===e?B.apply(E):B}A+=d(B)+'"\n target="galaxy_history">here</a> to undelete it\n ';B=q["if"].call(E,((C=E.urls),C==null||C===false?C:C.purge),{hash:{},inverse:p.noop,fn:p.program(7,i,D),data:D});if(B||B===0){A+=B}A+="\n ";return A}function i(E,D){var A="",C,B;A+='\n or <a href="'+d(((C=((C=E.urls),C==null||C===false?C:C.purge)),typeof C===e?C.apply(E):C))+'" class="historyItemPurge" id="historyItemPurger-';if(B=q.id){B=B.call(E,{hash:{},data:D})}else{B=E.id;B=typeof B===e?B.apply(E):B}A+=d(B)+'"\n target="galaxy_history">here</a> to immediately remove it from disk\n ';return A}function f(D,C){var B,A;A={hash:{},inverse:p.noop,fn:p.program(10,y,C),data:C};if(B=q.warningmessagesmall){B=B.call(D,A)}else{B=D.warningmessagesmall;B=typeof B===e?B.apply(D):B}if(!q.warningmessagesmall){B=c.call(D,B,A)}if(B||B===0){return B}else{return""}}function y(E,D){var A="",C,B;A+="\n ";B={hash:{},inverse:p.noop,fn:p.program(11,x,D),data:D};if(C=q.local){C=C.call(E,B)}else{C=E.local;C=typeof C===e?C.apply(E):C}if(!q.local){C=c.call(E,C,B)}if(C||C===0){A+=C}A+="\n";return A}function x(B,A){return"This dataset has been deleted and removed from disk."}function w(D,C){var B,A;A={hash:{},inverse:p.noop,fn:p.program(14,v,C),data:C};if(B=q.warningmessagesmall){B=B.call(D,A)}else{B=D.warningmessagesmall;B=typeof B===e?B.apply(D):B}if(!q.warningmessagesmall){B=c.call(D,B,A)}if(B||B===0){return B}else{return""}}function v(F,E){var A="",D,C,B;A+="\n ";B={hash:{},inverse:p.noop,fn:p.program(15,u,E),data:E};if(D=q.local){D=D.call(F,B)}else{D=F.local;D=typeof D===e?D.apply(F):D}if(!q.local){D=c.call(F,D,B)}if(D||D===0){A+=D}A+="\n ";C=q["if"].call(F,((D=F.urls),D==null||D===false?D:D.unhide),{hash:{},inverse:p.noop,fn:p.program(17,t,E),data:E});if(C||C===0){A+=C}A+="\n";return A}function u(B,A){return"This dataset has been hidden."}function t(E,D){var A="",C,B;A+='\n Click <a 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v(J,I){return"Your history is empty. 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\ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/template-visualization-chartControl.js --- a/static/scripts/packed/templates/compiled/template-visualization-chartControl.js +++ b/static/scripts/packed/templates/compiled/template-visualization-chartControl.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-chartControl"]=b(function(f,m,e,l,k){e=e||f.helpers;var i="",c,h,g="function",j=this.escapeExpression,n=this;function d(p,o){return' checked="true"'}i+='<p class="help-text">\n Use the following controls to how the chart is displayed.\n The slide controls can be moved by the mouse or, if the \'handle\' is in focus, your keyboard\'s arrow keys.\n Move the focus between controls by using the tab or shift+tab keys on your keyboard.\n Use the \'Draw\' button to render (or re-render) the chart with the current settings.\n </p>\n\n <div id="datapointSize" class="form-input numeric-slider-input">\n <label for="datapointSize">Size of data point: </label>\n <div class="slider-output">';h=e.datapointSize;if(h){c=h.call(m,{hash:{}})}else{c=m.datapointSize;c=typeof c===g?c():c}i+=j(c)+'</div>\n <div class="slider"></div>\n <p class="form-help help-text-small">\n Size of the graphic representation of each data point\n </p>\n </div>\n\n <div id="animDuration" class="form-input checkbox-input">\n <label for="animate-chart">Animate chart transitions?: </label>\n <input type="checkbox" id="animate-chart"\n class="checkbox control"';c=m.animDuration;c=e["if"].call(m,c,{hash:{},inverse:n.noop,fn:n.program(1,d,k)});if(c||c===0){i+=c}i+=' />\n <p class="form-help help-text-small">\n Uncheck this to disable the animations used on the chart\n </p>\n </div>\n\n <div id="width" class="form-input numeric-slider-input">\n <label for="width">Chart width: </label>\n <div class="slider-output">';h=e.width;if(h){c=h.call(m,{hash:{}})}else{c=m.width;c=typeof c===g?c():c}i+=j(c)+'</div>\n <div class="slider"></div>\n <p class="form-help help-text-small">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id="height" class="form-input numeric-slider-input">\n <label for="height">Chart height: </label>\n <div class="slider-output">';h=e.height;if(h){c=h.call(m,{hash:{}})}else{c=m.height;c=typeof c===g?c():c}i+=j(c)+'</div>\n <div class="slider"></div>\n <p class="form-help help-text-small">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id="X-axis-label"class="text-input form-input">\n <label for="X-axis-label">Re-label the X axis: </label>\n <input type="text" name="X-axis-label" id="X-axis-label" value="';h=e.xLabel;if(h){c=h.call(m,{hash:{}})}else{c=m.xLabel;c=typeof c===g?c():c}i+=j(c)+'" />\n <p class="form-help help-text-small"></p>\n </div>\n\n <div id="Y-axis-label" class="text-input form-input">\n <label for="Y-axis-label">Re-label the Y axis: </label>\n <input type="text" name="Y-axis-label" id="Y-axis-label" value="';h=e.yLabel;if(h){c=h.call(m,{hash:{}})}else{c=m.yLabel;c=typeof c===g?c():c}i+=j(c)+'" />\n <p class="form-help help-text-small"></p>\n </div>\n\n <input id="render-button" type="button" value="Draw" />';return i})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-chartControl"]=b(function(f,l,e,k,j){this.compilerInfo=[2,">= 1.0.0-rc.3"];e=e||f.helpers;j=j||{};var h="",c,g="function",i=this.escapeExpression,m=this;function d(o,n){return' checked="true"'}h+='<p class="help-text">\n Use the following controls to how the chart is displayed.\n The slide controls can be moved by the mouse or, if the \'handle\' is in focus, your keyboard\'s arrow keys.\n Move the focus between controls by using the tab or shift+tab keys on your keyboard.\n Use the \'Draw\' button to render (or re-render) the chart with the current settings.\n </p>\n\n <div id="datapointSize" class="form-input numeric-slider-input">\n <label for="datapointSize">Size of data point: </label>\n <div class="slider-output">';if(c=e.datapointSize){c=c.call(l,{hash:{},data:j})}else{c=l.datapointSize;c=typeof c===g?c.apply(l):c}h+=i(c)+'</div>\n <div class="slider"></div>\n <p class="form-help help-text-small">\n Size of the graphic representation of each data point\n </p>\n </div>\n\n <div id="animDuration" class="form-input checkbox-input">\n <label for="animate-chart">Animate chart transitions?: </label>\n <input type="checkbox" id="animate-chart"\n class="checkbox control"';c=e["if"].call(l,l.animDuration,{hash:{},inverse:m.noop,fn:m.program(1,d,j),data:j});if(c||c===0){h+=c}h+=' />\n <p class="form-help help-text-small">\n Uncheck this to disable the animations used on the chart\n </p>\n </div>\n\n <div id="width" class="form-input numeric-slider-input">\n <label for="width">Chart width: </label>\n <div class="slider-output">';if(c=e.width){c=c.call(l,{hash:{},data:j})}else{c=l.width;c=typeof c===g?c.apply(l):c}h+=i(c)+'</div>\n <div class="slider"></div>\n <p class="form-help help-text-small">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id="height" class="form-input numeric-slider-input">\n <label for="height">Chart height: </label>\n <div class="slider-output">';if(c=e.height){c=c.call(l,{hash:{},data:j})}else{c=l.height;c=typeof c===g?c.apply(l):c}h+=i(c)+'</div>\n <div class="slider"></div>\n <p class="form-help help-text-small">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id="X-axis-label"class="text-input form-input">\n <label for="X-axis-label">Re-label the X axis: </label>\n <input type="text" name="X-axis-label" id="X-axis-label" value="';if(c=e.xLabel){c=c.call(l,{hash:{},data:j})}else{c=l.xLabel;c=typeof c===g?c.apply(l):c}h+=i(c)+'" />\n <p class="form-help help-text-small"></p>\n </div>\n\n <div id="Y-axis-label" class="text-input form-input">\n <label for="Y-axis-label">Re-label the Y axis: </label>\n <input type="text" name="Y-axis-label" id="Y-axis-label" value="';if(c=e.yLabel){c=c.call(l,{hash:{},data:j})}else{c=l.yLabel;c=typeof c===g?c.apply(l):c}h+=i(c)+'" />\n <p class="form-help help-text-small"></p>\n </div>\n\n <input id="render-button" type="button" value="Draw" />';return h})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/template-visualization-chartDisplay.js --- a/static/scripts/packed/templates/compiled/template-visualization-chartDisplay.js +++ b/static/scripts/packed/templates/compiled/template-visualization-chartDisplay.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-chartDisplay"]=b(function(e,l,d,k,j){d=d||e.helpers;var h="",c,g,f="function",i=this.escapeExpression;h+='<svg width="';g=d.width;if(g){c=g.call(l,{hash:{}})}else{c=l.width;c=typeof c===f?c():c}h+=i(c)+'" height="';g=d.height;if(g){c=g.call(l,{hash:{}})}else{c=l.height;c=typeof c===f?c():c}h+=i(c)+'"></svg>';return h})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-chartDisplay"]=b(function(e,k,d,j,i){this.compilerInfo=[2,">= 1.0.0-rc.3"];d=d||e.helpers;i=i||{};var g="",c,f="function",h=this.escapeExpression;g+='<svg width="';if(c=d.width){c=c.call(k,{hash:{},data:i})}else{c=k.width;c=typeof c===f?c.apply(k):c}g+=h(c)+'" height="';if(c=d.height){c=c.call(k,{hash:{},data:i})}else{c=k.height;c=typeof c===f?c.apply(k):c}g+=h(c)+'"></svg>';return g})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/template-visualization-dataControl.js --- a/static/scripts/packed/templates/compiled/template-visualization-dataControl.js +++ b/static/scripts/packed/templates/compiled/template-visualization-dataControl.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-dataControl"]=b(function(g,n,f,m,l){f=f||g.helpers;var j="",d,i,h="function",k=this.escapeExpression,q=this;function e(v,u){var s="",t,r;s+='\n <option value="';r=f.index;if(r){t=r.call(v,{hash:{}})}else{t=v.index;t=typeof t===h?t():t}s+=k(t)+'">';r=f.name;if(r){t=r.call(v,{hash:{}})}else{t=v.name;t=typeof t===h?t():t}s+=k(t)+"</option>\n ";return s}function c(v,u){var s="",t,r;s+='\n <option value="';r=f.index;if(r){t=r.call(v,{hash:{}})}else{t=v.index;t=typeof t===h?t():t}s+=k(t)+'">';r=f.name;if(r){t=r.call(v,{hash:{}})}else{t=v.name;t=typeof t===h?t():t}s+=k(t)+"</option>\n ";return s}function p(v,u){var s="",t,r;s+='\n <option value="';r=f.index;if(r){t=r.call(v,{hash:{}})}else{t=v.index;t=typeof t===h?t():t}s+=k(t)+'">';r=f.name;if(r){t=r.call(v,{hash:{}})}else{t=v.name;t=typeof t===h?t():t}s+=k(t)+"</option>\n ";return s}function o(s,r){return'checked="true"'}j+="<p class=\"help-text\">\n Use the following controls to change the data used by the chart.\n Use the 'Draw' button to render (or re-render) the chart with the current settings.\n </p>\n\n ";j+='\n <div class="column-select">\n <label for="X-select">Data column for X: </label>\n <select name="X" id="X-select">\n ';d=n.numericColumns;d=f.each.call(n,d,{hash:{},inverse:q.noop,fn:q.program(1,e,l)});if(d||d===0){j+=d}j+='\n </select>\n </div>\n <div class="column-select">\n <label for="Y-select">Data column for Y: </label>\n <select name="Y" id="Y-select">\n ';d=n.numericColumns;d=f.each.call(n,d,{hash:{},inverse:q.noop,fn:q.program(3,c,l)});if(d||d===0){j+=d}j+="\n </select>\n </div>\n\n ";j+='\n <div id="include-id">\n <label for="include-id-checkbox">Include a third column as data point IDs?</label>\n <input type="checkbox" name="include-id" id="include-id-checkbox" />\n <p class="help-text-small">\n These will be displayed (along with the x and y values) when you hover over\n a data point.\n </p>\n </div>\n <div class="column-select" style="display: none">\n <label for="ID-select">Data column for IDs: </label>\n <select name="ID" id="ID-select">\n ';d=n.allColumns;d=f.each.call(n,d,{hash:{},inverse:q.noop,fn:q.program(5,p,l)});if(d||d===0){j+=d}j+="\n </select>\n </div>\n\n ";j+='\n <div id="first-line-header" style="display: none;">\n <p>Possible headers: ';i=f.possibleHeaders;if(i){d=i.call(n,{hash:{}})}else{d=n.possibleHeaders;d=typeof d===h?d():d}j+=k(d)+'\n </p>\n <label for="first-line-header-checkbox">Use the above as column headers?</label>\n <input type="checkbox" name="include-id" id="first-line-header-checkbox"\n ';d=n.usePossibleHeaders;d=f["if"].call(n,d,{hash:{},inverse:q.noop,fn:q.program(7,o,l)});if(d||d===0){j+=d}j+='/>\n <p class="help-text-small">\n It looks like Galaxy couldn\'t get proper column headers for this data.\n Would you like to use the column headers above as column names to select columns?\n </p>\n </div>\n\n <input id="render-button" type="button" value="Draw" />\n <div class="clear"></div>';return j})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-dataControl"]=b(function(g,m,f,l,k){this.compilerInfo=[2,">= 1.0.0-rc.3"];f=f||g.helpers;k=k||{};var i="",d,h="function",j=this.escapeExpression,n=this;function e(r,q){var o="",p;o+='\n <option value="';if(p=f.index){p=p.call(r,{hash:{},data:q})}else{p=r.index;p=typeof p===h?p.apply(r):p}o+=j(p)+'">';if(p=f.name){p=p.call(r,{hash:{},data:q})}else{p=r.name;p=typeof p===h?p.apply(r):p}o+=j(p)+"</option>\n ";return o}function c(p,o){return'checked="true"'}i+='<p class="help-text">\n Use the following controls to change the data used by the chart.\n Use the \'Draw\' button to render (or re-render) the chart with the current settings.\n </p>\n\n \n <div class="column-select">\n <label for="X-select">Data column for X: </label>\n <select name="X" id="X-select">\n ';d=f.each.call(m,m.numericColumns,{hash:{},inverse:n.noop,fn:n.program(1,e,k),data:k});if(d||d===0){i+=d}i+='\n </select>\n </div>\n <div class="column-select">\n <label for="Y-select">Data column for Y: </label>\n <select name="Y" id="Y-select">\n ';d=f.each.call(m,m.numericColumns,{hash:{},inverse:n.noop,fn:n.program(1,e,k),data:k});if(d||d===0){i+=d}i+='\n </select>\n </div>\n\n \n <div id="include-id">\n <label for="include-id-checkbox">Include a third column as data point IDs?</label>\n <input type="checkbox" name="include-id" id="include-id-checkbox" />\n <p class="help-text-small">\n These will be displayed (along with the x and y values) when you hover over\n a data point.\n </p>\n </div>\n <div class="column-select" style="display: none">\n <label for="ID-select">Data column for IDs: </label>\n <select name="ID" id="ID-select">\n ';d=f.each.call(m,m.allColumns,{hash:{},inverse:n.noop,fn:n.program(1,e,k),data:k});if(d||d===0){i+=d}i+='\n </select>\n </div>\n\n \n <div id="first-line-header" style="display: none;">\n <p>Possible headers: ';if(d=f.possibleHeaders){d=d.call(m,{hash:{},data:k})}else{d=m.possibleHeaders;d=typeof d===h?d.apply(m):d}i+=j(d)+'\n </p>\n <label for="first-line-header-checkbox">Use the above as column headers?</label>\n <input type="checkbox" name="include-id" id="first-line-header-checkbox"\n ';d=f["if"].call(m,m.usePossibleHeaders,{hash:{},inverse:n.noop,fn:n.program(3,c,k),data:k});if(d||d===0){i+=d}i+='/>\n <p class="help-text-small">\n It looks like Galaxy couldn\'t get proper column headers for this data.\n Would you like to use the column headers above as column names to select columns?\n </p>\n </div>\n\n <input id="render-button" type="button" value="Draw" />\n <div class="clear"></div>';return i})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/template-visualization-scatterplotControlForm.js --- a/static/scripts/packed/templates/compiled/template-visualization-scatterplotControlForm.js +++ b/static/scripts/packed/templates/compiled/template-visualization-scatterplotControlForm.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-scatterplotControlForm"]=b(function(e,l,d,k,j){d=d||e.helpers;var h="",c,g,f="function",i=this.escapeExpression;h+='\n\n<div class="scatterplot-container chart-container tabbable tabs-left">\n ';h+='\n <ul class="nav nav-tabs">\n ';h+='\n <li class="active"><a href="#data-control" data-toggle="tab" class="tooltip"\n title="Use this tab to change which data are used">Data Controls</a></li>\n <li><a href="#chart-control" data-toggle="tab" class="tooltip"\n title="Use this tab to change how the chart is drawn">Chart Controls</a></li>\n <li><a href="#stats-display" data-toggle="tab" class="tooltip"\n title="This tab will display overall statistics for your data">Statistics</a></li>\n <li><a href="#chart-display" data-toggle="tab" class="tooltip"\n title="This tab will display the chart">Chart</a>\n ';h+='\n <div id="loading-indicator" style="display: none;">\n <img class="loading-img" src="';g=d.loadingIndicatorImagePath;if(g){c=g.call(l,{hash:{}})}else{c=l.loadingIndicatorImagePath;c=typeof c===f?c():c}h+=i(c)+'" />\n <span class="loading-message">';g=d.message;if(g){c=g.call(l,{hash:{}})}else{c=l.message;c=typeof c===f?c():c}h+=i(c)+"</span>\n </div>\n </li>\n </ul>\n\n ";h+='\n <div class="tab-content">\n ';h+='\n <div id="data-control" class="tab-pane active">\n ';h+="\n </div>\n \n ";h+='\n <div id="chart-control" class="tab-pane">\n ';h+="\n </div>\n\n ";h+='\n <div id="stats-display" class="tab-pane">\n ';h+="\n </div>\n\n ";h+='\n <div id="chart-display" class="tab-pane">\n ';h+="\n </div>\n\n </div>";h+="\n</div>";return h})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-scatterplotControlForm"]=b(function(e,k,d,j,i){this.compilerInfo=[2,">= 1.0.0-rc.3"];d=d||e.helpers;i=i||{};var g="",c,f="function",h=this.escapeExpression;g+='\n\n<div class="scatterplot-container chart-container tabbable tabs-left">\n \n <ul class="nav nav-tabs">\n \n <li class="active"><a href="#data-control" data-toggle="tab" class="tooltip"\n title="Use this tab to change which data are used">Data Controls</a></li>\n <li><a href="#chart-control" data-toggle="tab" class="tooltip"\n title="Use this tab to change how the chart is drawn">Chart Controls</a></li>\n <li><a href="#stats-display" data-toggle="tab" class="tooltip"\n title="This tab will display overall statistics for your data">Statistics</a></li>\n <li><a href="#chart-display" data-toggle="tab" class="tooltip"\n title="This tab will display the chart">Chart</a>\n \n <div id="loading-indicator" style="display: none;">\n <img class="loading-img" src="';if(c=d.loadingIndicatorImagePath){c=c.call(k,{hash:{},data:i})}else{c=k.loadingIndicatorImagePath;c=typeof c===f?c.apply(k):c}g+=h(c)+'" />\n <span class="loading-message">';if(c=d.message){c=c.call(k,{hash:{},data:i})}else{c=k.message;c=typeof c===f?c.apply(k):c}g+=h(c)+'</span>\n </div>\n </li>\n </ul>\n\n \n <div class="tab-content">\n \n <div id="data-control" class="tab-pane active">\n \n </div>\n \n \n <div id="chart-control" class="tab-pane">\n \n </div>\n\n \n <div id="stats-display" class="tab-pane">\n \n </div>\n\n \n <div id="chart-display" class="tab-pane">\n \n </div>\n\n </div>\n</div>';return g})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/template-visualization-statsDisplay.js --- a/static/scripts/packed/templates/compiled/template-visualization-statsDisplay.js +++ b/static/scripts/packed/templates/compiled/template-visualization-statsDisplay.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-statsDisplay"]=b(function(f,l,e,k,j){e=e||f.helpers;var h="",c,g="function",i=this.escapeExpression,m=this;function d(r,q){var o="",p,n;o+="\n <tr><td>";n=e.name;if(n){p=n.call(r,{hash:{}})}else{p=r.name;p=typeof p===g?p():p}o+=i(p)+"</td><td>";n=e.xval;if(n){p=n.call(r,{hash:{}})}else{p=r.xval;p=typeof p===g?p():p}o+=i(p)+"</td><td>";n=e.yval;if(n){p=n.call(r,{hash:{}})}else{p=r.yval;p=typeof p===g?p():p}o+=i(p)+"</td></tr>\n </tr>\n ";return o}h+='<p class="help-text">By column:</p>\n <table id="chart-stats-table">\n <thead><th></th><th>X</th><th>Y</th></thead>\n ';c=l.stats;c=e.each.call(l,c,{hash:{},inverse:m.noop,fn:m.program(1,d,j)});if(c||c===0){h+=c}h+="\n </table>";return h})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-visualization-statsDisplay"]=b(function(f,l,e,k,j){this.compilerInfo=[2,">= 1.0.0-rc.3"];e=e||f.helpers;j=j||{};var h="",c,g="function",i=this.escapeExpression,m=this;function d(q,p){var n="",o;n+="\n <tr><td>";if(o=e.name){o=o.call(q,{hash:{},data:p})}else{o=q.name;o=typeof o===g?o.apply(q):o}n+=i(o)+"</td><td>";if(o=e.xval){o=o.call(q,{hash:{},data:p})}else{o=q.xval;o=typeof o===g?o.apply(q):o}n+=i(o)+"</td><td>";if(o=e.yval){o=o.call(q,{hash:{},data:p})}else{o=q.yval;o=typeof o===g?o.apply(q):o}n+=i(o)+"</td></tr>\n </tr>\n ";return n}h+='<p class="help-text">By column:</p>\n <table id="chart-stats-table">\n <thead><th></th><th>X</th><th>Y</th></thead>\n ';c=e.each.call(l,l.stats,{hash:{},inverse:m.noop,fn:m.program(1,d,j),data:j});if(c||c===0){h+=c}h+="\n </table>";return h})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/template-warningmessagesmall.js --- a/static/scripts/packed/templates/compiled/template-warningmessagesmall.js +++ b/static/scripts/packed/templates/compiled/template-warningmessagesmall.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-warningmessagesmall"]=b(function(e,k,d,j,i){d=d||e.helpers;var h="",c,g,f="function";h+=' \n <div class="warningmessagesmall"><strong>';g=d.warning;if(g){c=g.call(k,{hash:{}})}else{c=k.warning;c=typeof c===f?c():c}if(c||c===0){h+=c}h+="</strong></div>";return h})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-warningmessagesmall"]=b(function(i,j,f,d,g){this.compilerInfo=[2,">= 1.0.0-rc.3"];f=f||i.helpers;g=g||{};var c="",e,h="function";c+=' \n <div class="warningmessagesmall"><strong>';if(e=f.warning){e=e.call(j,{hash:{},data:g})}else{e=j.warning;e=typeof e===h?e.apply(j):e}if(e||e===0){c+=e}c+="</strong></div>";return c})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/tool_form.js --- a/static/scripts/packed/templates/compiled/tool_form.js +++ b/static/scripts/packed/templates/compiled/tool_form.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a.tool_form=b(function(f,m,e,l,k){e=e||f.helpers;var i="",c,h,g="function",j=this.escapeExpression,n=this;function d(s,r){var p="",q,o;p+='\n <div class="form-row">\n <label for="';o=e.name;if(o){q=o.call(s,{hash:{}})}else{q=s.name;q=typeof q===g?q():q}p+=j(q)+'">';o=e.label;if(o){q=o.call(s,{hash:{}})}else{q=s.label;q=typeof q===g?q():q}p+=j(q)+':</label>\n <div class="form-row-input">\n ';o=e.html;if(o){q=o.call(s,{hash:{}})}else{q=s.html;q=typeof q===g?q():q}if(q||q===0){p+=q}p+='\n </div>\n <div class="toolParamHelp" style="clear: both;">\n ';o=e.help;if(o){q=o.call(s,{hash:{}})}else{q=s.help;q=typeof q===g?q():q}p+=j(q)+'\n </div>\n <div style="clear: both;"></div>\n </div>\n ';return p}i+='<div class="toolFormTitle">';h=e.name;if(h){c=h.call(m,{hash:{}})}else{c=m.name;c=typeof c===g?c():c}i+=j(c)+" (version ";h=e.version;if(h){c=h.call(m,{hash:{}})}else{c=m.version;c=typeof c===g?c():c}i+=j(c)+')</div>\n <div class="toolFormBody">\n ';c=m.inputs;c=e.each.call(m,c,{hash:{},inverse:n.noop,fn:n.program(1,d,k)});if(c||c===0){i+=c}i+='\n </div>\n <div class="form-row form-actions">\n <input type="submit" class="btn btn-primary" name="runtool_btn" value="Execute">\n</div>\n<div class="toolHelp">\n <div class="toolHelpBody">';h=e.help;if(h){c=h.call(m,{hash:{}})}else{c=m.help;c=typeof c===g?c():c}i+=j(c)+"</div>\n</div>";return i})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a.tool_form=b(function(f,l,e,k,j){this.compilerInfo=[2,">= 1.0.0-rc.3"];e=e||f.helpers;j=j||{};var h="",c,g="function",i=this.escapeExpression,m=this;function d(q,p){var n="",o;n+='\n <div class="form-row">\n <label for="';if(o=e.name){o=o.call(q,{hash:{},data:p})}else{o=q.name;o=typeof o===g?o.apply(q):o}n+=i(o)+'">';if(o=e.label){o=o.call(q,{hash:{},data:p})}else{o=q.label;o=typeof o===g?o.apply(q):o}n+=i(o)+':</label>\n <div class="form-row-input">\n ';if(o=e.html){o=o.call(q,{hash:{},data:p})}else{o=q.html;o=typeof o===g?o.apply(q):o}if(o||o===0){n+=o}n+='\n </div>\n <div class="toolParamHelp" style="clear: both;">\n ';if(o=e.help){o=o.call(q,{hash:{},data:p})}else{o=q.help;o=typeof o===g?o.apply(q):o}n+=i(o)+'\n </div>\n <div style="clear: both;"></div>\n </div>\n ';return n}h+='<div class="toolFormTitle">';if(c=e.name){c=c.call(l,{hash:{},data:j})}else{c=l.name;c=typeof c===g?c.apply(l):c}h+=i(c)+" (version ";if(c=e.version){c=c.call(l,{hash:{},data:j})}else{c=l.version;c=typeof c===g?c.apply(l):c}h+=i(c)+')</div>\n <div class="toolFormBody">\n ';c=e.each.call(l,l.inputs,{hash:{},inverse:m.noop,fn:m.program(1,d,j),data:j});if(c||c===0){h+=c}h+='\n </div>\n <div class="form-row form-actions">\n <input type="submit" class="btn btn-primary" name="runtool_btn" value="Execute">\n</div>\n<div class="toolHelp">\n <div class="toolHelpBody">';if(c=e.help){c=c.call(l,{hash:{},data:j})}else{c=l.help;c=typeof c===g?c.apply(l):c}h+=i(c)+"</div>\n</div>";return h})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/tool_link.js --- a/static/scripts/packed/templates/compiled/tool_link.js +++ b/static/scripts/packed/templates/compiled/tool_link.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a.tool_link=b(function(e,l,d,k,j){d=d||e.helpers;var h="",c,g,f="function",i=this.escapeExpression;h+='<a class="';g=d.id;if(g){c=g.call(l,{hash:{}})}else{c=l.id;c=typeof c===f?c():c}h+=i(c)+' tool-link" href="';g=d.link;if(g){c=g.call(l,{hash:{}})}else{c=l.link;c=typeof c===f?c():c}h+=i(c)+'" target="';g=d.target;if(g){c=g.call(l,{hash:{}})}else{c=l.target;c=typeof c===f?c():c}h+=i(c)+'" minsizehint="';g=d.min_width;if(g){c=g.call(l,{hash:{}})}else{c=l.min_width;c=typeof c===f?c():c}h+=i(c)+'">';g=d.name;if(g){c=g.call(l,{hash:{}})}else{c=l.name;c=typeof c===f?c():c}h+=i(c)+"</a> ";g=d.description;if(g){c=g.call(l,{hash:{}})}else{c=l.description;c=typeof c===f?c():c}h+=i(c);return h})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a.tool_link=b(function(e,k,d,j,i){this.compilerInfo=[2,">= 1.0.0-rc.3"];d=d||e.helpers;i=i||{};var g="",c,f="function",h=this.escapeExpression;g+='<a class="';if(c=d.id){c=c.call(k,{hash:{},data:i})}else{c=k.id;c=typeof c===f?c.apply(k):c}g+=h(c)+' tool-link" href="';if(c=d.link){c=c.call(k,{hash:{},data:i})}else{c=k.link;c=typeof c===f?c.apply(k):c}g+=h(c)+'" target="';if(c=d.target){c=c.call(k,{hash:{},data:i})}else{c=k.target;c=typeof c===f?c.apply(k):c}g+=h(c)+'" minsizehint="';if(c=d.min_width){c=c.call(k,{hash:{},data:i})}else{c=k.min_width;c=typeof c===f?c.apply(k):c}g+=h(c)+'">';if(c=d.name){c=c.call(k,{hash:{},data:i})}else{c=k.name;c=typeof c===f?c.apply(k):c}g+=h(c)+"</a> ";if(c=d.description){c=c.call(k,{hash:{},data:i})}else{c=k.description;c=typeof c===f?c.apply(k):c}g+=h(c);return g})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/packed/templates/compiled/tool_search.js --- a/static/scripts/packed/templates/compiled/tool_search.js +++ b/static/scripts/packed/templates/compiled/tool_search.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a.tool_search=b(function(e,l,d,k,j){d=d||e.helpers;var h="",c,g,f="function",i=this.escapeExpression;h+='<input type="text" name="query" value="';g=d.search_hint_string;if(g){c=g.call(l,{hash:{}})}else{c=l.search_hint_string;c=typeof c===f?c():c}h+=i(c)+'" id="tool-search-query" autocomplete="off" class="search-query parent-width" />\n<a id="search-clear-btn" class="tooltip" title="clear search (esc)"></a>\n<img src="';g=d.spinner_url;if(g){c=g.call(l,{hash:{}})}else{c=l.spinner_url;c=typeof c===f?c():c}h+=i(c)+'" id="search-spinner" class="search-spinner"/>';return h})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a.tool_search=b(function(e,k,d,j,i){this.compilerInfo=[2,">= 1.0.0-rc.3"];d=d||e.helpers;i=i||{};var g="",c,f="function",h=this.escapeExpression;g+='<input type="text" name="query" value="';if(c=d.search_hint_string){c=c.call(k,{hash:{},data:i})}else{c=k.search_hint_string;c=typeof c===f?c.apply(k):c}g+=h(c)+'" id="tool-search-query" autocomplete="off" class="search-query parent-width" />\n<a id="search-clear-btn" class="tooltip" title="clear search (esc)"></a>\n<img src="';if(c=d.spinner_url){c=c.call(k,{hash:{},data:i})}else{c=k.spinner_url;c=typeof c===f?c.apply(k):c}g+=h(c)+'" id="search-spinner" class="search-spinner"/>';return g})})(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/panel_section.js --- a/static/scripts/templates/compiled/panel_section.js +++ b/static/scripts/templates/compiled/panel_section.js @@ -1,22 +1,24 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['panel_section'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression; buffer += "<div class=\"toolSectionTitle\" id=\"title_"; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\">\n <a href=\"javascript:void(0)\"><span>"; - foundHelper = helpers.name; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</span></a>\n</div>\n<div id=\""; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\" class=\"toolSectionBody\" style=\"display: none; \">\n <div class=\"toolSectionBg\"></div>\n<div>"; - return buffer;}); + if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\">\n <a href=\"javascript:void(0)\"><span>"; + if (stack1 = helpers.name) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</span></a>\n</div>\n<div id=\""; + if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\" class=\"toolSectionBody\" style=\"display: none; \">\n <div class=\"toolSectionBg\"></div>\n<div>"; + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-annotationArea.js --- a/static/scripts/templates/compiled/template-hda-annotationArea.js +++ b/static/scripts/templates/compiled/template-hda-annotationArea.js @@ -1,39 +1,43 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-annotationArea'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, options, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; function program1(depth0,data) { - return "Annotation";} + return "Annotation"; + } function program3(depth0,data) { - return "Edit dataset annotation";} + return "Edit dataset annotation"; + } buffer += "\n<div id=\""; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "-annotation-area\" class=\"annotation-area\" style=\"display: none;\">\n <strong>"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } + if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "-annotation-area\" class=\"annotation-area\" style=\"display: none;\">\n <strong>"; + options = {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += ":</strong>\n <div id=\""; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "-anotation-elt\" class=\"annotation-elt tooltip editable-text\"\n style=\"margin: 1px 0px 1px 0px\" title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(3, program3, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(3, program3, data)}); } + if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "-anotation-elt\" class=\"annotation-elt tooltip editable-text\"\n style=\"margin: 1px 0px 1px 0px\" title=\""; + options = {hash:{},inverse:self.noop,fn:self.program(3, program3, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\">\n </div>\n</div>"; - return buffer;}); + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-displayApps.js --- a/static/scripts/templates/compiled/template-hda-displayApps.js +++ b/static/scripts/templates/compiled/template-hda-displayApps.js @@ -1,51 +1,53 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-displayApps'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; var stack1, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; function program1(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1; buffer += "\n "; - foundHelper = helpers.label; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.label; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\n "; - stack1 = depth0.links; - stack1 = helpers.each.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); + if (stack1 = helpers.label) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.label; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\n "; + stack1 = helpers.each.call(depth0, depth0.links, {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n <br />\n"; - return buffer;} + return buffer; + } function program2(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n <a target=\""; - foundHelper = helpers.target; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.target; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\" href=\""; - foundHelper = helpers.href; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.href; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\">"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(3, program3, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(3, program3, data)}); } + if (stack1 = helpers.target) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.target; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\" href=\""; + if (stack1 = helpers.href) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.href; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\">"; + options = {hash:{},inverse:self.noop,fn:self.program(3, program3, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "</a>\n "; - return buffer;} + return buffer; + } function program3(depth0,data) { - var stack1, foundHelper; - foundHelper = helpers.text; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.text; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - return escapeExpression(stack1);} + var stack1; + if (stack1 = helpers.text) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.text; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + return escapeExpression(stack1); + } - stack1 = depth0.displayApps; - stack1 = helpers.each.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); + stack1 = helpers.each.call(depth0, depth0.displayApps, {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}); if(stack1 || stack1 === 0) { return stack1; } - else { return ''; }}); + else { return ''; } + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-downloadLinks.js --- a/static/scripts/templates/compiled/template-hda-downloadLinks.js +++ b/static/scripts/templates/compiled/template-hda-downloadLinks.js @@ -1,117 +1,106 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-downloadLinks'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var stack1, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var stack1, stack2, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; function program1(depth0,data) { - var buffer = "", stack1, foundHelper; - buffer += "\n"; - buffer += "\n<div popupmenu=\"dataset-"; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "-popup\">\n <a class=\"action-button\" href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.download; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\">"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); } - if(stack1 || stack1 === 0) { buffer += stack1; } + var buffer = "", stack1, stack2, options; + buffer += "\n" + + "\n<div popupmenu=\"dataset-"; + if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "-popup\">\n <a class=\"action-button\" href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.download)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\">"; + options = {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}; + if (stack2 = helpers.local) { stack2 = stack2.call(depth0, options); } + else { stack2 = depth0.local; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + if (!helpers.local) { stack2 = blockHelperMissing.call(depth0, stack2, options); } + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "</a>\n <a>"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(4, program4, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(4, program4, data)}); } - if(stack1 || stack1 === 0) { buffer += stack1; } + options = {hash:{},inverse:self.noop,fn:self.program(4, program4, data),data:data}; + if (stack2 = helpers.local) { stack2 = stack2.call(depth0, options); } + else { stack2 = depth0.local; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + if (!helpers.local) { stack2 = blockHelperMissing.call(depth0, stack2, options); } + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "</a>\n "; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.meta_download; - stack1 = helpers.each.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(6, program6, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + stack2 = helpers.each.call(depth0, ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.meta_download), {hash:{},inverse:self.noop,fn:self.program(6, program6, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n</div>\n<div style=\"float:left;\" class=\"menubutton split popup\" id=\"dataset-"; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "-popup\">\n <a href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.download; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\" title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(9, program9, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(9, program9, data)}); } - if(stack1 || stack1 === 0) { buffer += stack1; } + if (stack2 = helpers.id) { stack2 = stack2.call(depth0, {hash:{},data:data}); } + else { stack2 = depth0.id; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + buffer += escapeExpression(stack2) + + "-popup\">\n <a href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.download)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\" title=\""; + options = {hash:{},inverse:self.noop,fn:self.program(7, program7, data),data:data}; + if (stack2 = helpers.local) { stack2 = stack2.call(depth0, options); } + else { stack2 = depth0.local; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + if (!helpers.local) { stack2 = blockHelperMissing.call(depth0, stack2, options); } + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\" class=\"icon-button disk tooltip\"></a>\n</div>\n"; - return buffer;} + return buffer; + } function program2(depth0,data) { - return "Download Dataset";} + return "Download Dataset"; + } function program4(depth0,data) { - return "Additional Files";} + return "Additional Files"; + } function program6(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n <a class=\"action-button\" href=\""; - foundHelper = helpers.url; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.url; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\">"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(7, program7, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(7, program7, data)}); } + if (stack1 = helpers.url) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.url; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\">"; + options = {hash:{},inverse:self.noop,fn:self.program(7, program7, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += " "; - foundHelper = helpers.file_type; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.file_type; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</a>\n "; - return buffer;} + if (stack1 = helpers.file_type) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.file_type; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</a>\n "; + return buffer; + } function program7(depth0,data) { - return "Download";} + return "Download"; + } function program9(depth0,data) { - - return "Download";} + var buffer = "", stack1, stack2, options; + buffer += "\n" + + "\n<a href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.download)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\" title=\""; + options = {hash:{},inverse:self.noop,fn:self.program(7, program7, data),data:data}; + if (stack2 = helpers.local) { stack2 = stack2.call(depth0, options); } + else { stack2 = depth0.local; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + if (!helpers.local) { stack2 = blockHelperMissing.call(depth0, stack2, options); } + if(stack2 || stack2 === 0) { buffer += stack2; } + buffer += "\" class=\"icon-button disk tooltip\"></a>\n"; + return buffer; + } -function program11(depth0,data) { - - var buffer = "", stack1, foundHelper; - buffer += "\n"; - buffer += "\n<a href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.download; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\" title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(12, program12, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(12, program12, data)}); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\" class=\"icon-button disk tooltip\"></a>\n"; - return buffer;} -function program12(depth0,data) { - - - return "Download";} - - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.meta_download; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(11, program11, data),fn:self.program(1, program1, data)}); - if(stack1 || stack1 === 0) { return stack1; } - else { return ''; }}); + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.meta_download), {hash:{},inverse:self.program(9, program9, data),fn:self.program(1, program1, data),data:data}); + if(stack2 || stack2 === 0) { return stack2; } + else { return ''; } + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-failedMetadata.js --- a/static/scripts/templates/compiled/template-hda-failedMetadata.js +++ b/static/scripts/templates/compiled/template-hda-failedMetadata.js @@ -1,33 +1,35 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-failedMetadata'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var stack1, foundHelper, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var stack1, options, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression; function program1(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\nYou may be able to <a href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.edit; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\" target=\"galaxy_main\">set it manually or retry auto-detection</a>.\n"; - return buffer;} + buffer += "\nYou may be able to <a href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.edit)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\" target=\"galaxy_main\">set it manually or retry auto-detection</a>.\n"; + return buffer; + } function program2(depth0,data) { - return "An error occurred setting the metadata for this dataset.";} + return "An error occurred setting the metadata for this dataset."; + } - foundHelper = helpers.warningmessagesmall; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } - else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}; + if (stack1 = helpers.warningmessagesmall) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { return stack1; } - else { return ''; }}); + else { return ''; } + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-hdaSummary.js --- a/static/scripts/templates/compiled/template-hda-hdaSummary.js +++ b/static/scripts/templates/compiled/template-hda-hdaSummary.js @@ -1,66 +1,67 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-hdaSummary'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression, self=this; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression, self=this; function program1(depth0,data) { - var buffer = "", stack1, foundHelper; - buffer += "\n <a class=\"metadata-dbkey\" href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.edit; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\" target=\"galaxy_main\">"; - foundHelper = helpers.metadata_dbkey; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</a>\n "; - return buffer;} + var buffer = "", stack1, stack2; + buffer += "\n <a class=\"metadata-dbkey\" href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.edit)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\" target=\"galaxy_main\">"; + if (stack2 = helpers.metadata_dbkey) { stack2 = stack2.call(depth0, {hash:{},data:data}); } + else { stack2 = depth0.metadata_dbkey; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + buffer += escapeExpression(stack2) + + "</a>\n "; + return buffer; + } function program3(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1; buffer += "\n <span class=\"metadata-dbkey "; - foundHelper = helpers.metadata_dbkey; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\">"; - foundHelper = helpers.metadata_dbkey; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</span>\n "; - return buffer;} + if (stack1 = helpers.metadata_dbkey) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\">"; + if (stack1 = helpers.metadata_dbkey) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</span>\n "; + return buffer; + } function program5(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1; buffer += "\n<div class=\"hda-info\"> "; - foundHelper = helpers.misc_info; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.misc_info; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + " </div>\n"; - return buffer;} + if (stack1 = helpers.misc_info) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.misc_info; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + " </div>\n"; + return buffer; + } buffer += "<div class=\"hda-summary\">\n "; - foundHelper = helpers.misc_blurb; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.misc_blurb; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "<br />\n format: <span class=\""; - foundHelper = helpers.data_type; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.data_type; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\">"; - foundHelper = helpers.data_type; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.data_type; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</span>,\n database:\n "; - stack1 = depth0.dbkey_unknown_and_editable; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(3, program3, data),fn:self.program(1, program1, data)}); + if (stack1 = helpers.misc_blurb) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.misc_blurb; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "<br />\n format: <span class=\""; + if (stack1 = helpers.data_type) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.data_type; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\">"; + if (stack1 = helpers.data_type) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.data_type; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</span>,\n database:\n "; + stack1 = helpers['if'].call(depth0, depth0.dbkey_unknown_and_editable, {hash:{},inverse:self.program(3, program3, data),fn:self.program(1, program1, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n</div>\n"; - stack1 = depth0.misc_info; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(5, program5, data)}); + stack1 = helpers['if'].call(depth0, depth0.misc_info, {hash:{},inverse:self.noop,fn:self.program(5, program5, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } - return buffer;}); + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-tagArea.js --- a/static/scripts/templates/compiled/template-hda-tagArea.js +++ b/static/scripts/templates/compiled/template-hda-tagArea.js @@ -1,20 +1,23 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-tagArea'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, options, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing; function program1(depth0,data) { - return "Tags";} + return "Tags"; + } buffer += "\n<div class=\"tag-area\" style=\"display: none;\">\n <strong>"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += ":</strong>\n <div class=\"tag-elt\">\n </div>\n</div>"; - return buffer;}); + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-titleLink.js --- a/static/scripts/templates/compiled/template-hda-titleLink.js +++ b/static/scripts/templates/compiled/template-hda-titleLink.js @@ -1,18 +1,20 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-titleLink'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression; buffer += "<span class=\"historyItemTitle\">"; - foundHelper = helpers.hid; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.hid; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + ": "; - foundHelper = helpers.name; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</span>"; - return buffer;}); + if (stack1 = helpers.hid) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.hid; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + ": "; + if (stack1 = helpers.name) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</span>"; + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-hda-warning-messages.js --- a/static/scripts/templates/compiled/template-hda-warning-messages.js +++ b/static/scripts/templates/compiled/template-hda-warning-messages.js @@ -1,160 +1,159 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-warning-messages'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; function program1(depth0,data) { var stack1; - stack1 = depth0.purged; - stack1 = helpers.unless.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); + stack1 = helpers.unless.call(depth0, depth0.purged, {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}); if(stack1 || stack1 === 0) { return stack1; } - else { return ''; }} + else { return ''; } + } function program2(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n"; - foundHelper = helpers.warningmessagesmall; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(3, program3, data)}); } - else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(3, program3, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(3, program3, data),data:data}; + if (stack1 = helpers.warningmessagesmall) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n"; - return buffer;} + return buffer; + } function program3(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, stack2, options; buffer += "\n "; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(4, program4, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(4, program4, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(4, program4, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n "; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.undelete; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(6, program6, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.undelete), {hash:{},inverse:self.noop,fn:self.program(6, program6, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n"; - return buffer;} + return buffer; + } function program4(depth0,data) { - return "This dataset has been deleted.";} + return "This dataset has been deleted."; + } function program6(depth0,data) { - var buffer = "", stack1, foundHelper; - buffer += "\n "; - buffer += "\n Click <a href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.undelete; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\" class=\"historyItemUndelete\" id=\"historyItemUndeleter-"; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\"\n target=\"galaxy_history\">here</a> to undelete it\n "; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.purge; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(7, program7, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + var buffer = "", stack1, stack2; + buffer += "\n " + + "\n Click <a href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.undelete)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\" class=\"historyItemUndelete\" id=\"historyItemUndeleter-"; + if (stack2 = helpers.id) { stack2 = stack2.call(depth0, {hash:{},data:data}); } + else { stack2 = depth0.id; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + buffer += escapeExpression(stack2) + + "\"\n target=\"galaxy_history\">here</a> to undelete it\n "; + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.purge), {hash:{},inverse:self.noop,fn:self.program(7, program7, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n "; - return buffer;} + return buffer; + } function program7(depth0,data) { - var buffer = "", stack1, foundHelper; - buffer += "\n or <a href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.purge; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\" class=\"historyItemPurge\" id=\"historyItemPurger-"; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\"\n target=\"galaxy_history\">here</a> to immediately remove it from disk\n "; - return buffer;} + var buffer = "", stack1, stack2; + buffer += "\n or <a href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.purge)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\" class=\"historyItemPurge\" id=\"historyItemPurger-"; + if (stack2 = helpers.id) { stack2 = stack2.call(depth0, {hash:{},data:data}); } + else { stack2 = depth0.id; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + buffer += escapeExpression(stack2) + + "\"\n target=\"galaxy_history\">here</a> to immediately remove it from disk\n "; + return buffer; + } function program9(depth0,data) { - var stack1, foundHelper; - foundHelper = helpers.warningmessagesmall; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(10, program10, data)}); } - else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(10, program10, data)}); } + var stack1, options; + options = {hash:{},inverse:self.noop,fn:self.program(10, program10, data),data:data}; + if (stack1 = helpers.warningmessagesmall) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { return stack1; } - else { return ''; }} + else { return ''; } + } function program10(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n "; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(11, program11, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(11, program11, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(11, program11, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n"; - return buffer;} + return buffer; + } function program11(depth0,data) { - return "This dataset has been deleted and removed from disk.";} + return "This dataset has been deleted and removed from disk."; + } function program13(depth0,data) { - var stack1, foundHelper; - foundHelper = helpers.warningmessagesmall; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(14, program14, data)}); } - else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(14, program14, data)}); } + var stack1, options; + options = {hash:{},inverse:self.noop,fn:self.program(14, program14, data),data:data}; + if (stack1 = helpers.warningmessagesmall) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { return stack1; } - else { return ''; }} + else { return ''; } + } function program14(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, stack2, options; buffer += "\n "; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(15, program15, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(15, program15, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n "; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.unhide; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(17, program17, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.unhide), {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n"; - return buffer;} + return buffer; + } function program15(depth0,data) { - return "This dataset has been hidden.";} + return "This dataset has been hidden."; + } function program17(depth0,data) { - var buffer = "", stack1, foundHelper; - buffer += "\n Click <a href=\""; - stack1 = depth0.urls; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.unhide; - stack1 = typeof stack1 === functionType ? stack1() : stack1; - buffer += escapeExpression(stack1) + "\" class=\"historyItemUnhide\" id=\"historyItemUnhider-"; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\"\n target=\"galaxy_history\">here</a> to unhide it\n "; - return buffer;} + var buffer = "", stack1, stack2; + buffer += "\n Click <a href=\"" + + escapeExpression(((stack1 = ((stack1 = depth0.urls),stack1 == null || stack1 === false ? stack1 : stack1.unhide)),typeof stack1 === functionType ? stack1.apply(depth0) : stack1)) + + "\" class=\"historyItemUnhide\" id=\"historyItemUnhider-"; + if (stack2 = helpers.id) { stack2 = stack2.call(depth0, {hash:{},data:data}); } + else { stack2 = depth0.id; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + buffer += escapeExpression(stack2) + + "\"\n target=\"galaxy_history\">here</a> to unhide it\n "; + return buffer; + } - stack1 = depth0.deleted; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); + stack1 = helpers['if'].call(depth0, depth0.deleted, {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n\n"; - stack1 = depth0.purged; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(9, program9, data)}); + stack1 = helpers['if'].call(depth0, depth0.purged, {hash:{},inverse:self.noop,fn:self.program(9, program9, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n\n"; - stack1 = depth0.visible; - stack1 = helpers.unless.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(13, program13, data)}); + stack1 = helpers.unless.call(depth0, depth0.visible, {hash:{},inverse:self.noop,fn:self.program(13, program13, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } - return buffer;}); + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-history-historyPanel.js --- a/static/scripts/templates/compiled/template-history-historyPanel.js +++ b/static/scripts/templates/compiled/template-history-historyPanel.js @@ -1,240 +1,253 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-history-historyPanel'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, stack2, options, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression; function program1(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n <div id=\"history-name\" class=\"tooltip editable-text\"\n title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\">"; - foundHelper = helpers.name; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</div>\n "; - return buffer;} + if (stack1 = helpers.name) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</div>\n "; + return buffer; + } function program2(depth0,data) { - return "Click to rename history";} + return "Click to rename history"; + } function program4(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n <div id=\"history-name\" class=\"tooltip\"\n title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(5, program5, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(5, program5, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(5, program5, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\">"; - foundHelper = helpers.name; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</div>\n "; - return buffer;} + if (stack1 = helpers.name) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</div>\n "; + return buffer; + } function program5(depth0,data) { - return "You must be logged in to edit your history name";} + return "You must be logged in to edit your history name"; + } function program7(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n <a id=\"history-tag\" title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(8, program8, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(8, program8, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(8, program8, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\"\n class=\"icon-button tags tooltip\" target=\"galaxy_main\" href=\"javascript:void(0)\"></a>\n <a id=\"history-annotate\" title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(10, program10, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(10, program10, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(10, program10, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\"\n class=\"icon-button annotate tooltip\" target=\"galaxy_main\" href=\"javascript:void(0)\"></a>\n "; - return buffer;} + return buffer; + } function program8(depth0,data) { - return "Edit history tags";} + return "Edit history tags"; + } function program10(depth0,data) { - return "Edit history annotation";} + return "Edit history annotation"; + } function program12(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n "; - foundHelper = helpers.warningmessagesmall; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(13, program13, data)}); } - else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(13, program13, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(13, program13, data),data:data}; + if (stack1 = helpers.warningmessagesmall) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n "; - return buffer;} + return buffer; + } function program13(depth0,data) { - var stack1, foundHelper; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(14, program14, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(14, program14, data)}); } + var stack1, options; + options = {hash:{},inverse:self.noop,fn:self.program(14, program14, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { return stack1; } - else { return ''; }} + else { return ''; } + } function program14(depth0,data) { - return "You are currently viewing a deleted history!";} + return "You are currently viewing a deleted history!"; + } function program16(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n <div id=\"history-tag-annotation\">\n\n <div id=\"history-tag-area\" style=\"display: none\">\n <strong>"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(17, program17, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(17, program17, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += ":</strong>\n <div class=\"tag-elt\"></div>\n </div>\n\n <div id=\"history-annotation-area\" style=\"display: none\">\n <strong>"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(19, program19, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(19, program19, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += ":</strong>\n <div id=\"history-annotation-container\">\n <div id=\"history-annotation\" class=\"tooltip editable-text\"\n title=\""; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(21, program21, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(21, program21, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(21, program21, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\">\n "; - stack1 = depth0.annotation; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(25, program25, data),fn:self.program(23, program23, data)}); + stack1 = helpers['if'].call(depth0, depth0.annotation, {hash:{},inverse:self.program(25, program25, data),fn:self.program(23, program23, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </div>\n </div>\n </div>\n </div>\n "; - return buffer;} + return buffer; + } function program17(depth0,data) { - return "Tags";} + return "Tags"; + } function program19(depth0,data) { - return "Annotation";} + return "Annotation"; + } function program21(depth0,data) { - return "Click to edit annotation";} + return "Click to edit annotation"; + } function program23(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1; buffer += "\n "; - foundHelper = helpers.annotation; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.annotation; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\n "; - return buffer;} + if (stack1 = helpers.annotation) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.annotation; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\n "; + return buffer; + } function program25(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1, options; buffer += "\n <em>"; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(26, program26, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(26, program26, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(26, program26, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "</em>\n "; - return buffer;} + return buffer; + } function program26(depth0,data) { - return "Describe or add notes to history";} + return "Describe or add notes to history"; + } function program28(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1; buffer += "\n <div id=\"message-container\">\n <div class=\""; - foundHelper = helpers.status; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.status; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "message\">\n "; - foundHelper = helpers.message; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.message; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\n </div><br />\n </div>\n "; - return buffer;} + if (stack1 = helpers.status) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.status; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "message\">\n "; + if (stack1 = helpers.message) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.message; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\n </div><br />\n </div>\n "; + return buffer; + } function program30(depth0,data) { - return "You are over your disk quota.\n Tool execution is on hold until your disk usage drops below your allocated quota.";} + return "You are over your disk quota.\n Tool execution is on hold until your disk usage drops below your allocated quota."; + } function program32(depth0,data) { - return "Your history is empty. Click 'Get Data' on the left pane to start";} + return "Your history is empty. Click 'Get Data' on the left pane to start"; + } - buffer += "<div id=\"history-controls\">\n <div id=\"history-title-area\" class=\"historyLinks\">\n\n "; - buffer += "\n <div id=\"history-name-container\">\n "; - buffer += "\n "; - stack1 = depth0.user; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.email; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(4, program4, data),fn:self.program(1, program1, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + buffer += "<div id=\"history-controls\">\n <div id=\"history-title-area\" class=\"historyLinks\">\n\n " + + "\n <div id=\"history-name-container\">\n " + + "\n "; + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.user),stack1 == null || stack1 === false ? stack1 : stack1.email), {hash:{},inverse:self.program(4, program4, data),fn:self.program(1, program1, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n </div>\n </div>\n\n <div id=\"history-subtitle-area\">\n <div id=\"history-size\" style=\"float:left;\">"; - foundHelper = helpers.nice_size; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.nice_size; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</div>\n\n <div id=\"history-secondary-links\" style=\"float: right;\">\n "; - stack1 = depth0.user; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.email; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(7, program7, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + if (stack2 = helpers.nice_size) { stack2 = stack2.call(depth0, {hash:{},data:data}); } + else { stack2 = depth0.nice_size; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + buffer += escapeExpression(stack2) + + "</div>\n\n <div id=\"history-secondary-links\" style=\"float: right;\">\n "; + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.user),stack1 == null || stack1 === false ? stack1 : stack1.email), {hash:{},inverse:self.noop,fn:self.program(7, program7, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n </div>\n <div style=\"clear: both;\"></div>\n </div>\n\n "; - stack1 = depth0.deleted; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(12, program12, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + stack2 = helpers['if'].call(depth0, depth0.deleted, {hash:{},inverse:self.noop,fn:self.program(12, program12, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } + buffer += "\n\n " + + "\n " + + "\n "; + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.user),stack1 == null || stack1 === false ? stack1 : stack1.email), {hash:{},inverse:self.noop,fn:self.program(16, program16, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n\n "; - buffer += "\n "; - buffer += "\n "; - stack1 = depth0.user; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.email; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(16, program16, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - stack1 = depth0.message; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(28, program28, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + stack2 = helpers['if'].call(depth0, depth0.message, {hash:{},inverse:self.noop,fn:self.program(28, program28, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n\n <div id=\"quota-message-container\" style=\"display: none\">\n <div id=\"quota-message\" class=\"errormessage\">\n "; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(30, program30, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(30, program30, data)}); } - if(stack1 || stack1 === 0) { buffer += stack1; } + options = {hash:{},inverse:self.noop,fn:self.program(30, program30, data),data:data}; + if (stack2 = helpers.local) { stack2 = stack2.call(depth0, options); } + else { stack2 = depth0.local; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + if (!helpers.local) { stack2 = blockHelperMissing.call(depth0, stack2, options); } + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n </div>\n </div>\n</div>\n\n<div id=\""; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "-datasets\" class=\"history-datasets-list\"></div>\n\n<div class=\"infomessagesmall\" id=\"emptyHistoryMessage\" style=\"display: none;\">\n "; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(32, program32, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(32, program32, data)}); } - if(stack1 || stack1 === 0) { buffer += stack1; } + if (stack2 = helpers.id) { stack2 = stack2.call(depth0, {hash:{},data:data}); } + else { stack2 = depth0.id; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + buffer += escapeExpression(stack2) + + "-datasets\" class=\"history-datasets-list\"></div>\n\n<div class=\"infomessagesmall\" id=\"emptyHistoryMessage\" style=\"display: none;\">\n "; + options = {hash:{},inverse:self.noop,fn:self.program(32, program32, data),data:data}; + if (stack2 = helpers.local) { stack2 = stack2.call(depth0, options); } + else { stack2 = depth0.local; stack2 = typeof stack2 === functionType ? stack2.apply(depth0) : stack2; } + if (!helpers.local) { stack2 = blockHelperMissing.call(depth0, stack2, options); } + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n</div>"; - return buffer;}); + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-iconButton.js --- a/static/scripts/templates/compiled/template-iconButton.js +++ b/static/scripts/templates/compiled/template-iconButton.js @@ -1,12 +1,14 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-iconButton'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; partials = partials || Handlebars.partials; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; partials = partials || Handlebars.partials; data = data || {}; var buffer = "", stack1, self=this; buffer += "\n"; - stack1 = self.invokePartial(partials.iconButton, 'iconButton', depth0, helpers, partials);; + stack1 = self.invokePartial(partials.iconButton, 'iconButton', depth0, helpers, partials, data); if(stack1 || stack1 === 0) { buffer += stack1; } - return buffer;}); + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-popupmenu-menu.js --- a/static/scripts/templates/compiled/template-popupmenu-menu.js +++ b/static/scripts/templates/compiled/template-popupmenu-menu.js @@ -1,117 +1,119 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-popupmenu-menu'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression, self=this; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, stack2, functionType="function", escapeExpression=this.escapeExpression, self=this; function program1(depth0,data) { var buffer = "", stack1; buffer += "\n "; - stack1 = depth0.options; - stack1 = helpers.each.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); + stack1 = helpers.each.call(depth0, depth0.options, {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n"; - return buffer;} + return buffer; + } function program2(depth0,data) { var buffer = "", stack1; buffer += "\n "; - stack1 = depth0.divider; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(5, program5, data),fn:self.program(3, program3, data)}); + stack1 = helpers['if'].call(depth0, depth0.divider, {hash:{},inverse:self.program(5, program5, data),fn:self.program(3, program3, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n "; - return buffer;} + return buffer; + } function program3(depth0,data) { - return "\n <li class=\"divider\"></li>\n ";} + return "\n <li class=\"divider\"></li>\n "; + } function program5(depth0,data) { var buffer = "", stack1; buffer += "\n "; - stack1 = depth0.header; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(8, program8, data),fn:self.program(6, program6, data)}); + stack1 = helpers['if'].call(depth0, depth0.header, {hash:{},inverse:self.program(8, program8, data),fn:self.program(6, program6, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n "; - return buffer;} + return buffer; + } function program6(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1; buffer += "\n <li class=\"head\"><a href=\"\"javascript:void(0);\">"; - foundHelper = helpers.html; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.html; stack1 = typeof stack1 === functionType ? stack1() : stack1; } + if (stack1 = helpers.html) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.html; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "</a></li>\n "; - return buffer;} + return buffer; + } function program8(depth0,data) { - var buffer = "", stack1, foundHelper; - buffer += "\n "; - buffer += "\n <li><a href=\""; - stack1 = depth0.href; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(11, program11, data),fn:self.program(9, program9, data)}); + var buffer = "", stack1; + buffer += "\n " + + "\n <li><a href=\""; + stack1 = helpers['if'].call(depth0, depth0.href, {hash:{},inverse:self.program(11, program11, data),fn:self.program(9, program9, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\"\n "; - stack1 = depth0.href; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(13, program13, data)}); + stack1 = helpers['if'].call(depth0, depth0.href, {hash:{},inverse:self.noop,fn:self.program(13, program13, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += " class=\"popupmenu-option\">\n "; - stack1 = depth0.checked; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(15, program15, data)}); + stack1 = helpers['if'].call(depth0, depth0.checked, {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n "; - foundHelper = helpers.html; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.html; stack1 = typeof stack1 === functionType ? stack1() : stack1; } + if (stack1 = helpers.html) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.html; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </a></li>\n "; - return buffer;} + return buffer; + } function program9(depth0,data) { - var stack1, foundHelper; - foundHelper = helpers.href; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.href; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - return escapeExpression(stack1);} + var stack1; + if (stack1 = helpers.href) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.href; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + return escapeExpression(stack1); + } function program11(depth0,data) { - return "javascript:void(0);";} + return "javascript:void(0);"; + } function program13(depth0,data) { - var buffer = "", stack1, foundHelper; + var buffer = "", stack1; buffer += "target=\""; - foundHelper = helpers.target; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.target; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\""; - return buffer;} + if (stack1 = helpers.target) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.target; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\""; + return buffer; + } function program15(depth0,data) { - return "<span class=\"fa-icon-ok\"></span>";} + return "<span class=\"fa-icon-ok\"></span>"; + } function program17(depth0,data) { - return "\n <li>No Options.</li>\n";} + return "\n <li>No Options.</li>\n"; + } buffer += "<ul id=\""; - foundHelper = helpers.id; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "-menu\" class=\"dropdown-menu\">\n"; - stack1 = depth0.options; - stack1 = stack1 == null || stack1 === false ? stack1 : stack1.length; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.program(17, program17, data),fn:self.program(1, program1, data)}); - if(stack1 || stack1 === 0) { buffer += stack1; } + if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "-menu\" class=\"dropdown-menu\">\n"; + stack2 = helpers['if'].call(depth0, ((stack1 = depth0.options),stack1 == null || stack1 === false ? stack1 : stack1.length), {hash:{},inverse:self.program(17, program17, data),fn:self.program(1, program1, data),data:data}); + if(stack2 || stack2 === 0) { buffer += stack2; } buffer += "\n</ul>"; - return buffer;}); + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-user-quotaMeter-quota.js --- a/static/scripts/templates/compiled/template-user-quotaMeter-quota.js +++ b/static/scripts/templates/compiled/template-user-quotaMeter-quota.js @@ -1,29 +1,32 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-user-quotaMeter-quota'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, options, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; function program1(depth0,data) { - return "Using";} + return "Using"; + } buffer += "<div id=\"quota-meter\" class=\"quota-meter progress\">\n <div id=\"quota-meter-bar\" class=\"quota-meter-bar bar\" style=\"width: "; - foundHelper = helpers.quota_percent; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.quota_percent; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "%\"></div>\n "; - buffer += "\n <div id=\"quota-meter-text\" class=\"quota-meter-text\"style=\"top: 6px\">\n "; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } + if (stack1 = helpers.quota_percent) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.quota_percent; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "%\"></div>\n " + + "\n <div id=\"quota-meter-text\" class=\"quota-meter-text\"style=\"top: 6px\">\n "; + options = {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += " "; - foundHelper = helpers.quota_percent; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.quota_percent; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "%\n </div>\n</div>"; - return buffer;}); + if (stack1 = helpers.quota_percent) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.quota_percent; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "%\n </div>\n</div>"; + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-user-quotaMeter-usage.js --- a/static/scripts/templates/compiled/template-user-quotaMeter-usage.js +++ b/static/scripts/templates/compiled/template-user-quotaMeter-usage.js @@ -1,24 +1,27 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-user-quotaMeter-usage'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, options, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression; function program1(depth0,data) { - return "Using";} + return "Using"; + } buffer += "\n<div id=\"quota-meter\" class=\"quota-meter\" style=\"background-color: transparent\">\n <div id=\"quota-meter-text\" class=\"quota-meter-text\" style=\"top: 6px; color: white\">\n "; - foundHelper = helpers.local; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); } + options = {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}; + if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } + else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } buffer += " "; - foundHelper = helpers.nice_total_disk_usage; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.nice_total_disk_usage; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\n </div>\n</div>"; - return buffer;}); + if (stack1 = helpers.nice_total_disk_usage) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.nice_total_disk_usage; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\n </div>\n</div>"; + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-visualization-chartControl.js --- a/static/scripts/templates/compiled/template-visualization-chartControl.js +++ b/static/scripts/templates/compiled/template-visualization-chartControl.js @@ -1,38 +1,40 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-visualization-chartControl'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression, self=this; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression, self=this; function program1(depth0,data) { - return " checked=\"true\"";} + return " checked=\"true\""; + } buffer += "<p class=\"help-text\">\n Use the following controls to how the chart is displayed.\n The slide controls can be moved by the mouse or, if the 'handle' is in focus, your keyboard's arrow keys.\n Move the focus between controls by using the tab or shift+tab keys on your keyboard.\n Use the 'Draw' button to render (or re-render) the chart with the current settings.\n </p>\n\n <div id=\"datapointSize\" class=\"form-input numeric-slider-input\">\n <label for=\"datapointSize\">Size of data point: </label>\n <div class=\"slider-output\">"; - foundHelper = helpers.datapointSize; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.datapointSize; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</div>\n <div class=\"slider\"></div>\n <p class=\"form-help help-text-small\">\n Size of the graphic representation of each data point\n </p>\n </div>\n\n <div id=\"animDuration\" class=\"form-input checkbox-input\">\n <label for=\"animate-chart\">Animate chart transitions?: </label>\n <input type=\"checkbox\" id=\"animate-chart\"\n class=\"checkbox control\""; - stack1 = depth0.animDuration; - stack1 = helpers['if'].call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); + if (stack1 = helpers.datapointSize) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.datapointSize; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</div>\n <div class=\"slider\"></div>\n <p class=\"form-help help-text-small\">\n Size of the graphic representation of each data point\n </p>\n </div>\n\n <div id=\"animDuration\" class=\"form-input checkbox-input\">\n <label for=\"animate-chart\">Animate chart transitions?: </label>\n <input type=\"checkbox\" id=\"animate-chart\"\n class=\"checkbox control\""; + stack1 = helpers['if'].call(depth0, depth0.animDuration, {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += " />\n <p class=\"form-help help-text-small\">\n Uncheck this to disable the animations used on the chart\n </p>\n </div>\n\n <div id=\"width\" class=\"form-input numeric-slider-input\">\n <label for=\"width\">Chart width: </label>\n <div class=\"slider-output\">"; - foundHelper = helpers.width; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.width; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</div>\n <div class=\"slider\"></div>\n <p class=\"form-help help-text-small\">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id=\"height\" class=\"form-input numeric-slider-input\">\n <label for=\"height\">Chart height: </label>\n <div class=\"slider-output\">"; - foundHelper = helpers.height; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.height; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "</div>\n <div class=\"slider\"></div>\n <p class=\"form-help help-text-small\">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id=\"X-axis-label\"class=\"text-input form-input\">\n <label for=\"X-axis-label\">Re-label the X axis: </label>\n <input type=\"text\" name=\"X-axis-label\" id=\"X-axis-label\" value=\""; - foundHelper = helpers.xLabel; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.xLabel; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\" />\n <p class=\"form-help help-text-small\"></p>\n </div>\n\n <div id=\"Y-axis-label\" class=\"text-input form-input\">\n <label for=\"Y-axis-label\">Re-label the Y axis: </label>\n <input type=\"text\" name=\"Y-axis-label\" id=\"Y-axis-label\" value=\""; - foundHelper = helpers.yLabel; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.yLabel; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\" />\n <p class=\"form-help help-text-small\"></p>\n </div>\n\n <input id=\"render-button\" type=\"button\" value=\"Draw\" />"; - return buffer;}); + if (stack1 = helpers.width) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.width; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</div>\n <div class=\"slider\"></div>\n <p class=\"form-help help-text-small\">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id=\"height\" class=\"form-input numeric-slider-input\">\n <label for=\"height\">Chart height: </label>\n <div class=\"slider-output\">"; + if (stack1 = helpers.height) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.height; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "</div>\n <div class=\"slider\"></div>\n <p class=\"form-help help-text-small\">\n (not including chart margins and axes)\n </p>\n </div>\n\n <div id=\"X-axis-label\"class=\"text-input form-input\">\n <label for=\"X-axis-label\">Re-label the X axis: </label>\n <input type=\"text\" name=\"X-axis-label\" id=\"X-axis-label\" value=\""; + if (stack1 = helpers.xLabel) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.xLabel; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\" />\n <p class=\"form-help help-text-small\"></p>\n </div>\n\n <div id=\"Y-axis-label\" class=\"text-input form-input\">\n <label for=\"Y-axis-label\">Re-label the Y axis: </label>\n <input type=\"text\" name=\"Y-axis-label\" id=\"Y-axis-label\" value=\""; + if (stack1 = helpers.yLabel) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.yLabel; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\" />\n <p class=\"form-help help-text-small\"></p>\n </div>\n\n <input id=\"render-button\" type=\"button\" value=\"Draw\" />"; + return buffer; + }); })(); \ No newline at end of file diff -r ddff105aef47f4686480e9fdae22a5b0dd94fcf1 -r dca01d90de51a758859ee0feec69cde38592bb2c static/scripts/templates/compiled/template-visualization-chartDisplay.js --- a/static/scripts/templates/compiled/template-visualization-chartDisplay.js +++ b/static/scripts/templates/compiled/template-visualization-chartDisplay.js @@ -1,18 +1,20 @@ (function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-visualization-chartDisplay'] = template(function (Handlebars,depth0,helpers,partials,data) { - helpers = helpers || Handlebars.helpers; - var buffer = "", stack1, foundHelper, functionType="function", escapeExpression=this.escapeExpression; + this.compilerInfo = [2,'>= 1.0.0-rc.3']; +helpers = helpers || Handlebars.helpers; data = data || {}; + var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression; buffer += "<svg width=\""; - foundHelper = helpers.width; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.width; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\" height=\""; - foundHelper = helpers.height; - if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{}}); } - else { stack1 = depth0.height; stack1 = typeof stack1 === functionType ? stack1() : stack1; } - buffer += escapeExpression(stack1) + "\"></svg>"; - return buffer;}); + if (stack1 = helpers.width) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.width; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\" height=\""; + if (stack1 = helpers.height) { stack1 = stack1.call(depth0, {hash:{},data:data}); } + else { stack1 = depth0.height; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } + buffer += escapeExpression(stack1) + + "\"></svg>"; + return buffer; + }); })(); \ No newline at end of file This diff is so big that we needed to truncate the remainder. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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galaxy-commits April 2013