October 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 8cc27b: Fix default value for optional select fields
by GitHub 01 Oct '15

01 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8cc27b45d04da7d6298a0b63c0a9c820dc6bed03 https://github.com/galaxyproject/galaxy/commit/8cc27b45d04da7d6298a0b63c0a9… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M lib/galaxy/tools/parameters/basic.py M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Fix default value for optional select fields Commit: df74d2651b32f110137359d4d9b41c7c581846fd https://github.com/galaxyproject/galaxy/commit/df74d2651b32f110137359d4d9b4… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Fix label text Commit: 5592422d01ea99bb0ba7c688227e38e963e96061 https://github.com/galaxyproject/galaxy/commit/5592422d01ea99bb0ba7c688227e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M lib/galaxy/tools/parameters/basic.py M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Merge pull request #826 from guerler/fix_select_000 Fix default value for optional select fields Compare: https://github.com/galaxyproject/galaxy/compare/bf33c847e03e...5592422d01ea

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[galaxyproject/galaxy] b0b119: Normalize test output name.
by GitHub 01 Oct '15

01 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b0b119356b130b82c39c6c811369f002cc571614 https://github.com/galaxyproject/galaxy/commit/b0b119356b130b82c39c6c811369… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M run_tests.sh Log Message: ----------- Normalize test output name. Update toolshed, casperjs, and framework tests to produce reports with the name of run_<type>_tests.html to match functional and API tests. Commit: 49740caaa2cf00e1eeb8bfdef1939638256103a0 https://github.com/galaxyproject/galaxy/commit/49740caaa2cf00e1eeb8bfdef193… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M run_tests.sh M test/casperjs/casperjs_runner.py Log Message: ----------- Add documentation for running casperjs tests through run_tests.sh. Add option to run a specific test. Verified xunit reports work and --dockerize works for casperjs tests. Commit: bf33c847e03ed0998f493c126c011fb492b07fb0 https://github.com/galaxyproject/galaxy/commit/bf33c847e03ed0998f493c126c01… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M run_tests.sh M test/casperjs/casperjs_runner.py Log Message: ----------- Merge pull request #825 from jmchilton/db_test_fix Various small run_tests.sh fixes/enhancements. Compare: https://github.com/galaxyproject/galaxy/compare/50547177f954...bf33c847e03e

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[galaxyproject/galaxy] a5e97e: UI, histories: fix scroll position capture/restore...
by GitHub 01 Oct '15

01 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a5e97e6e590c6cc387530e914af4bea8af66fe44 https://github.com/galaxyproject/galaxy/commit/a5e97e6e590c6cc387530e914af4… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/history/history-panel-edit-current.js M static/maps/mvc/history/history-panel-edit-current.js.map M static/scripts/mvc/history/history-panel-edit-current.js Log Message: ----------- UI, histories: fix scroll position capture/restore for the current history Commit: 50547177f954377d66b9193e504bdbfb01e04e7d https://github.com/galaxyproject/galaxy/commit/50547177f954377d66b9193e504b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/history/history-panel-edit-current.js M static/maps/mvc/history/history-panel-edit-current.js.map M static/scripts/mvc/history/history-panel-edit-current.js Log Message: ----------- Merge pull request #824 from carlfeberhard/fix.history-scroll-capture UI, histories: fix scroll position capture/restore for the current hi… Compare: https://github.com/galaxyproject/galaxy/compare/de82b1236dcf...50547177f954

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[galaxyproject/galaxy] 8a30d3: Fix change_password (destination for password rese...
by GitHub 01 Oct '15

01 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8a30d3add42904f1117599790d63dfa273374d51 https://github.com/galaxyproject/galaxy/commit/8a30d3add42904f1117599790d63… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-09-29 (Tue, 29 Sep 2015) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Fix change_password (destination for password reset link) to work w/ require_login Commit: 76fcde3274688db10eb259cdf25dbcc0d5187262 https://github.com/galaxyproject/galaxy/commit/76fcde3274688db10eb259cdf25d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-29 (Tue, 29 Sep 2015) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Merge pull request #811 from dannon/prt_fix [15.07] Fix change_password (destination for password reset link) to work w/ … Commit: 43ed7d556a4de0d8450c26848827a0dd25d5ad45 https://github.com/galaxyproject/galaxy/commit/43ed7d556a4de0d8450c26848827… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/tools/tools-form.js M lib/galaxy/web/framework/webapp.py M lib/pulsar/client/amqp_exchange.py M static/maps/mvc/tools/tools-form.js.map M static/scripts/mvc/tools/tools-form.js Log Message: ----------- Merge branch 'release_15.07' Commit: de82b1236dcf92137e9002cc9cad6e16125119fe https://github.com/galaxyproject/galaxy/commit/de82b1236dcf92137e9002cc9cad… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Merge branch 'master' into dev Compare: https://github.com/galaxyproject/galaxy/compare/c133078b6014...de82b1236dcf

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[galaxyproject/galaxy] e52b9a: Show tool parameter errors on initial tool form lo...
by GitHub 01 Oct '15

01 Oct '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/galaxy Commit: e52b9ac2552ea19c6e534968661382e23cc362fa https://github.com/galaxyproject/galaxy/commit/e52b9ac2552ea19c6e5349686613… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-09-25 (Fri, 25 Sep 2015) Changed paths: M client/galaxy/scripts/mvc/tools/tools-form.js M static/maps/mvc/tools/tools-form.js.map M static/scripts/mvc/tools/tools-form.js Log Message: ----------- Show tool parameter errors on initial tool form load. Needed for e.g. proper rerun display behavoir. Commit: 394c3726d6ff6d515b99361465c743d7cd9651d9 https://github.com/galaxyproject/galaxy/commit/394c3726d6ff6d515b99361465c7… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-28 (Mon, 28 Sep 2015) Changed paths: M client/galaxy/scripts/mvc/tools/tools-form.js M static/maps/mvc/tools/tools-form.js.map M static/scripts/mvc/tools/tools-form.js Log Message: ----------- Merge pull request #802 from blankenberg/tool_error_fixes [15.07] Show tool parameter errors on initial tool form load. Commit: 6fef4465ae3f8875a1aa6153d957941dd3fd737e https://github.com/galaxyproject/galaxy/commit/6fef4465ae3f8875a1aa6153d957… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-28 (Mon, 28 Sep 2015) Changed paths: M lib/pulsar/client/amqp_exchange.py Log Message: ----------- [Pulsar] Resubmit AMQP acknowledgement messages to the correct queue when consuming more than one. Also, only start one acknowledgement manager thread rather than one per consumer. Commit: 8a30d3add42904f1117599790d63dfa273374d51 https://github.com/galaxyproject/galaxy/commit/8a30d3add42904f1117599790d63… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-09-29 (Tue, 29 Sep 2015) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Fix change_password (destination for password reset link) to work w/ require_login Commit: 8c9e8686a159ec9fbee65457a8042fdcefd632f2 https://github.com/galaxyproject/galaxy/commit/8c9e8686a159ec9fbee65457a804… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-09-29 (Tue, 29 Sep 2015) Changed paths: M lib/pulsar/client/amqp_exchange.py Log Message: ----------- Merge pull request #808 from natefoo/amqp_ack [15.07] [Pulsar] Resubmit AMQP acknowledgement messages to the correct queue Commit: 76fcde3274688db10eb259cdf25dbcc0d5187262 https://github.com/galaxyproject/galaxy/commit/76fcde3274688db10eb259cdf25d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-29 (Tue, 29 Sep 2015) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Merge pull request #811 from dannon/prt_fix [15.07] Fix change_password (destination for password reset link) to work w/ … Commit: 43ed7d556a4de0d8450c26848827a0dd25d5ad45 https://github.com/galaxyproject/galaxy/commit/43ed7d556a4de0d8450c26848827… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/tools/tools-form.js M lib/galaxy/web/framework/webapp.py M lib/pulsar/client/amqp_exchange.py M static/maps/mvc/tools/tools-form.js.map M static/scripts/mvc/tools/tools-form.js Log Message: ----------- Merge branch 'release_15.07' Compare: https://github.com/galaxyproject/galaxy/compare/759b67dfa8cc...43ed7d556a4d

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[galaxyproject/galaxy] 6592a1: Fix db initialization when galaxy.ini doesn't exis...
by GitHub 01 Oct '15

01 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6592a140899a93a54d0bff1f7944a489e746bf06 https://github.com/galaxyproject/galaxy/commit/6592a140899a93a54d0bff1f7944… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M lib/galaxy/model/orm/scripts.py Log Message: ----------- Fix db initialization when galaxy.ini doesn't exist. Commit: c133078b60146450fc9b05db8c5a4ff52af5bc95 https://github.com/galaxyproject/galaxy/commit/c133078b60146450fc9b05db8c5a… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M lib/galaxy/model/orm/scripts.py Log Message: ----------- Merge pull request #822 from jmchilton/db_test_fix Fix db initialization when galaxy.ini doesn't exist. Compare: https://github.com/galaxyproject/galaxy/compare/d8ce3c25df0e...c133078b6014

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