Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 1288cf0505eea6139bf9f34d60e6b255268d717d
https://github.com/galaxyproject/galaxy/commit/1288cf0505eea6139bf9f34d60e6…
Author: tmcgowan <mcgo0092(a)umn.edu>
Date: 2016-10-11 (Tue, 11 Oct 2016)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-view.js
M lib/galaxy/webapps/galaxy/controllers/workflow.py
M static/maps/mvc/workflow/workflow-view.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/mvc/workflow/workflow-view.js
M templates/webapps/galaxy/workflow/editor.mako
Log Message:
-----------
Add workflow save-as functionality. Issue 3000
Commit: 2ab0b18706dc54cde3507e194a935f513c68119c
https://github.com/galaxyproject/galaxy/commit/2ab0b18706dc54cde3507e194a93…
Author: tmcgowan <mcgo0092(a)umn.edu>
Date: 2016-10-11 (Tue, 11 Oct 2016)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/workflow.py
Log Message:
-----------
Allow names with spaces
Commit: 38464b5b284289c66263adc19afa0a6be2e24389
https://github.com/galaxyproject/galaxy/commit/38464b5b284289c66263adc19afa…
Author: tmcgowan <mcgo0092(a)umn.edu>
Date: 2016-10-18 (Tue, 18 Oct 2016)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-view.js
M lib/galaxy/webapps/galaxy/controllers/workflow.py
M static/maps/mvc/workflow/workflow-view.js.map
M static/scripts/mvc/workflow/workflow-view.js
M templates/webapps/galaxy/workflow/editor.mako
Log Message:
-----------
Originating workflow must be unchanged, load save as workflow to editor on save.
Commit: 0eff2ec6479b321d9fc653aa9eaf79559fc50e56
https://github.com/galaxyproject/galaxy/commit/0eff2ec6479b321d9fc653aa9eaf…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-10-27 (Thu, 27 Oct 2016)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-view.js
M lib/galaxy/webapps/galaxy/controllers/workflow.py
M static/maps/mvc/workflow/workflow-view.js.map
M static/scripts/mvc/workflow/workflow-view.js
M templates/webapps/galaxy/workflow/editor.mako
Log Message:
-----------
Merge remote-tracking branch 'tmcgowan/issue_3000' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/541643d7fe28...0eff2ec6479b
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: fc027124e73ee391e4b4045b2abc68fd942f910c
https://github.com/galaxyproject/galaxy/commit/fc027124e73ee391e4b4045b2abc…
Author: Peter Cock <p.j.a.cock(a)googlemail.com>
Date: 2016-10-26 (Wed, 26 Oct 2016)
Changed paths:
M config/tool_data_table_conf.xml.sample
Log Message:
-----------
Fix BLAST database *.loc files inconsistency
We should have all of the ``blast*.loc`` files in the sample configuration, or none of them.
Historically Galaxy included only the nucleotide BLAST database ``blastdb.loc`` file for use with mega-blast, with ``blastdb_p.loc`` later for protein databases added as part of the BLAST+ suite (which initially was in the main Galaxy repository).
In a3018feb028658fc3a7071803b7b49cb575e7358 the mega-blast tool was moved to the Tool Shed, and the ``blastdb.loc`` entry removed. Likewise the BLAST+ tools were moved to the Tool Shed, but the ``blastdb_p.loc`` entry remains.
Later (on the Tool Shed only?) ``blastdb_d.loc``was added for protein domain databases.
Commit: 90d143cda16d7c7a0938e255c08bf9db7fea727c
https://github.com/galaxyproject/galaxy/commit/90d143cda16d7c7a0938e255c08b…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-10-26 (Wed, 26 Oct 2016)
Changed paths:
M config/tool_data_table_conf.xml.sample
Log Message:
-----------
Merge pull request #3098 from peterjc/patch-6
Fix BLAST database *.loc files inconsistency
Compare: https://github.com/galaxyproject/galaxy/compare/ab42b7b15c50...90d143cda16d
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 17da51abdc61e9fb1e3f76b36316c9dbf3c836e6
https://github.com/galaxyproject/galaxy/commit/17da51abdc61e9fb1e3f76b36316…
Author: Peter Cock <p.j.a.cock(a)googlemail.com>
Date: 2016-10-25 (Tue, 25 Oct 2016)
Changed paths:
M lib/galaxy/tools/data/__init__.py
Log Message:
-----------
Include filenames in loc file DEBUG lines
This will help debugging where multiple (possibly conflicting) ``*.loc`` files come from, e.g.
```
galaxy.tools.data DEBUG 2016-10-25 18:34:50,841 Loaded tool data table 'blastdb_p'
galaxy.tools.data DEBUG 2016-10-25 18:34:51,356 Loaded tool data table 'blastdb'
galaxy.tools.data DEBUG 2016-10-25 18:34:51,359 Loading another instance of data table 'blastdb_p', attempting to merge content.
galaxy.tools.data DEBUG 2016-10-25 18:34:51,375 Loaded tool data table 'blastdb_d'
```
Evidently I may have at least two copies of ``blastdb_p.loc``, but where are they?
Commit: 35346fdb3e6764b14ae3359fb9ea31c03d932ea0
https://github.com/galaxyproject/galaxy/commit/35346fdb3e6764b14ae3359fb9ea…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-10-26 (Wed, 26 Oct 2016)
Changed paths:
M lib/galaxy/tools/data/__init__.py
Log Message:
-----------
Merge pull request #3095 from peterjc/patch-4
Include filenames in loc file DEBUG lines
Compare: https://github.com/galaxyproject/galaxy/compare/8da4ad6563f2...35346fdb3e67