February 2016 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 04af1a: Always use the python hashlib for verifying the vi...
by GitHub 03 Feb '16

03 Feb '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 04af1ae1c609c0b73afabaf2aeb58110043847e6 https://github.com/galaxyproject/galaxy/commit/04af1ae1c609c0b73afabaf2aeb5… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Always use the python hashlib for verifying the virtualenv download in common_startup.sh rather than attempting to use sha256sum. Older versions of coreutils (such as in RHEL 6) did not include the --strict argument to sha256sum. Commit: 2641f0af9ac84f91ea0cf3e849b6e8348da8909d https://github.com/galaxyproject/galaxy/commit/2641f0af9ac84f91ea0cf3e849b6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #1668 from natefoo/venv-checksum [16.01] Always use the python hashlib method for verifying the virtualenv download Compare: https://github.com/galaxyproject/galaxy/compare/cd3f3b330db3...2641f0af9ac8

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[galaxyproject/galaxy] 6fa7f1: Bump pysam to new 0.8.4+gx1.
by GitHub 03 Feb '16

03 Feb '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 6fa7f1e1edda25ec36f2373148af223493924803 https://github.com/galaxyproject/galaxy/commit/6fa7f1e1edda25ec36f2373148af… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M lib/galaxy/dependencies/conda-environment.txt M lib/galaxy/dependencies/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt Log Message: ----------- Bump pysam to new 0.8.4+gx1. Commit: ba9ad97c40bd994e0dc51888ef235cf3b434168a https://github.com/galaxyproject/galaxy/commit/ba9ad97c40bd994e0dc51888ef23… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M test-data/3.bam Log Message: ----------- Fix 3.bam @PG header to use : instead of = as a key:value separator. See commentary in https://github.com/galaxyproject/galaxy/pull/1638 for more details. Commit: 39eb262219beca9ec6b849b49c0430d834cfd2ae https://github.com/galaxyproject/galaxy/commit/39eb262219beca9ec6b849b49c04… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M test-data/3.bam Log Message: ----------- More fixes to 3.bam to make it valid stripped out secondary HD header and duplicated sequences chr10-16 Commit: 66f20e7df91074e07cbade57b20deb68cb840a55 https://github.com/galaxyproject/galaxy/commit/66f20e7df91074e07cbade57b20d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Fix method signature of bam.set_meta to include a positional argument which is now required. Commit: d6325c5039f28062a2cf49d00c091d83a92865c3 https://github.com/galaxyproject/galaxy/commit/d6325c5039f28062a2cf49d00c09… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Update data providers pysam.AlignmentFile usage Commit: cd3f3b330db34e294e78374e8e8b32300c66f36e https://github.com/galaxyproject/galaxy/commit/cd3f3b330db34e294e78374e8e8b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/dependencies/conda-environment.txt M lib/galaxy/dependencies/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt M lib/galaxy/visualization/data_providers/genome.py M test-data/3.bam Log Message: ----------- Merge pull request #1638 from dannon/pysam_84_update Pysam 84 update [16.01] Compare: https://github.com/galaxyproject/galaxy/compare/b5d1c7721ee2...cd3f3b330db3

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[galaxyproject/usegalaxy-playbook] fdaac8: Update Main and datatypes_conf.xml
by GitHub 03 Feb '16

03 Feb '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: fdaac8f0aedc2a56535b02399bd8bbc33a4cfbc1 https://github.com/galaxyproject/usegalaxy-playbook/commit/fdaac8f0aedc2a56… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M production/group_vars/all.yml M templates/galaxy/usegalaxy.org/config/datatypes_conf.xml.j2 Log Message: ----------- Update Main and datatypes_conf.xml Commit: c5fd01dce4930436147c883e5bf98e4678530ae6 https://github.com/galaxyproject/usegalaxy-playbook/commit/c5fd01dce4930436… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M production/files/interactive_environments/plugins/.ansible_ie_role_current_version M production/files/interactive_environments/proxy/.ansible_ie_role_current_version M stage/files/interactive_environments/plugins/.ansible_ie_role_current_version M stage/files/interactive_environments/proxy/.ansible_ie_role_current_version Log Message: ----------- Version changes in the IE cache. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/159171d8b706...…

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[galaxyproject/galaxy] 45f523: fix show_welcome_with_login = True
by GitHub 03 Feb '16

03 Feb '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 45f523f9229f6d943e3a65042b8cad0276a0a7d7 https://github.com/galaxyproject/galaxy/commit/45f523f9229f6d943e3a65042b8c… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M client/galaxy/scripts/layout/page.js M static/maps/layout/page.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/page.js Log Message: ----------- fix show_welcome_with_login = True Commit: b5d1c7721ee2f8ad1095e52d4e710b998f92945d https://github.com/galaxyproject/galaxy/commit/b5d1c7721ee2f8ad1095e52d4e71… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M client/galaxy/scripts/layout/page.js M static/maps/layout/page.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/page.js Log Message: ----------- Merge pull request #1664 from bgruening/release_16.01 fix `show_welcome_with_login = True` Compare: https://github.com/galaxyproject/galaxy/compare/a95827751f46...b5d1c7721ee2

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[galaxyproject/usegalaxy-playbook] 159171: Update Test
by GitHub 03 Feb '16

03 Feb '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 159171d8b706f10cf0451ac71e8871db4f090c28 https://github.com/galaxyproject/usegalaxy-playbook/commit/159171d8b706f10c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test

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[galaxyproject/galaxy] 17a168: Warn on optional select test parameter.
by GitHub 02 Feb '16

02 Feb '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 17a1683a383d7f375b77371548ff7d349a561a96 https://github.com/galaxyproject/galaxy/commit/17a1683a383d7f375b77371548ff… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Warn on optional select test parameter. Commit: ccdb027d38428a38d79b4272fadb076b7f428825 https://github.com/galaxyproject/galaxy/commit/ccdb027d38428a38d79b4272fadb… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Prevent optional test parameters in conditionals Commit: 508ebea63f2376b5a3b452148e4a6d3c18366b3b https://github.com/galaxyproject/galaxy/commit/508ebea63f2376b5a3b452148e4a… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #8 from jmchilton/fix_optional_001 Warn on optional select test parameter. Commit: a95827751f463f35c67e76f84127f850972244c5 https://github.com/galaxyproject/galaxy/commit/a95827751f463f35c67e76f84127… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #1637 from guerler/fix_optional_001 [16.01] Prevent optional test parameters in conditionals Compare: https://github.com/galaxyproject/galaxy/compare/39aff8457201...a95827751f46

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[galaxyproject/galaxy] 517503: Fix url validator
by GitHub 02 Feb '16

02 Feb '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 517503386e0760ade50b84e61a633578428bc9d1 https://github.com/galaxyproject/galaxy/commit/517503386e0760ade50b84e61a63… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M lib/galaxy/tools/parameters/__init__.py M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Fix url validator Commit: b82efd93750480a727e0ef5c7f85b5fc8becce0e https://github.com/galaxyproject/galaxy/commit/b82efd93750480a727e0ef5c7f85… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M lib/galaxy/tools/parameters/__init__.py M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Merge pull request #1654 from guerler/fix_source_tools_000 Fix validation for data source tools Compare: https://github.com/galaxyproject/galaxy/compare/1d6208f9ae31...b82efd937504

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[galaxyproject/galaxy] cb09c3: Fix line wrapping for peek of tabular files.
by GitHub 02 Feb '16

02 Feb '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: cb09c35a07e3b9f8ca7e4eb5e8d37ffacdee6253 https://github.com/galaxyproject/galaxy/commit/cb09c35a07e3b9f8ca7e4eb5e8d3… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2016-01-13 (Wed, 13 Jan 2016) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/tabular.py Log Message: ----------- Fix line wrapping for peek of tabular files. Commit: 390c1fc275ba7128f22f533b0b512b0bc517e521 https://github.com/galaxyproject/galaxy/commit/390c1fc275ba7128f22f533b0b51… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-27 (Wed, 27 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Always install a specific version of Galaxy pip in common_startup.sh. Commit: 46471d61e4349bba2d0c702de18f91a5b201bb66 https://github.com/galaxyproject/galaxy/commit/46471d61e4349bba2d0c702de18f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- pip < 1.6 cannot parse requirement specifiers to the `install` command that contain a `+` in the version. For these older versions, directly install the wheel or install from the sdist. Technically 1.4 and later can install wheels, but in testing, only 1.5+ was able to install them properly with their scripts. The new heredoc execute and redirect syntax is Bourne-compatible. pip --pre is no longer necessary since the Galaxy pip version is no longer a development version of pip. Commit: 60062b020dc2b753e5b8f034272e0b982b8c2f6f https://github.com/galaxyproject/galaxy/commit/60062b020dc2b753e5b8f034272e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- pip 1.6 -> 6.0, thanks @nsoranzo Commit: 685fd1560e98e6d885d6cf627b691d2228807974 https://github.com/galaxyproject/galaxy/commit/685fd1560e98e6d885d6cf627b69… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #1595 from natefoo/fix-pip-wheel-version [16.01] Always install a specific version of Galaxy pip in common_startup.sh. Commit: 981f904c3f8a501ffabaf7b83538151070bd8a21 https://github.com/galaxyproject/galaxy/commit/981f904c3f8a501ffabaf7b83538… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-29 (Fri, 29 Jan 2016) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/util/__init__.py Log Message: ----------- Attempt to fix transiently failing test due to object store makedirs call. Failing test - https://jenkins.galaxyproject.org/job/docker-api/2421/testReport/junit/api.…. If you look at the actual source code for os.makedirs - it does inconsistently handle errno.EEXIST - this is probably a better approach than raw os.makedirs for most cases. xref #1617 Commit: 81535c5778b70001bfeb3da5690eba6426ea4638 https://github.com/galaxyproject/galaxy/commit/81535c5778b70001bfeb3da5690e… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-29 (Fri, 29 Jan 2016) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/tabular.py Log Message: ----------- Merge pull request #1500 from blankenberg/peek-fix [16.01] Fix line wrapping for peek of tabular files. Commit: 4ae49fbfec952a2087a9cf3f9b9940f86fd05220 https://github.com/galaxyproject/galaxy/commit/4ae49fbfec952a2087a9cf3f9b99… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-29 (Fri, 29 Jan 2016) Changed paths: M client/galaxy/style/less/base.less M static/style/blue/base.css Log Message: ----------- Fix module/step border style in workflow canvas Commit: 44336b289bd5ba7d9911bf1c1fcc0a604fda7358 https://github.com/galaxyproject/galaxy/commit/44336b289bd5ba7d9911bf1c1fcc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-29 (Fri, 29 Jan 2016) Changed paths: M client/galaxy/style/less/base.less M static/style/blue/base.css Log Message: ----------- Merge pull request #1620 from guerler/fix_module_border_000 [16.01] Fix module/step border style in workflow canvas Commit: ade18b3cd23c54c347d38585736d32da5fccc4dd https://github.com/galaxyproject/galaxy/commit/ade18b3cd23c54c347d38585736d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/util/__init__.py Log Message: ----------- Merge pull request #1623 from jmchilton/makedirs [16.01] Attempt to fix transiently failing test due to objectstore makedirs … Commit: 30ccebfb0c8ef0809bbd3f1d2d64be5ac23bb3a2 https://github.com/galaxyproject/galaxy/commit/30ccebfb0c8ef0809bbd3f1d2d64… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/lda_datasets.py Log Message: ----------- remove forgotten util.params that fails when POSTing a payload{} dict (because it cannot sanitize dict in dict) Commit: 61818948a163602b3c135937d053fe42c46bb4d2 https://github.com/galaxyproject/galaxy/commit/61818948a163602b3c135937d053… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-section.js M static/maps/mvc/form/form-section.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-section.js Log Message: ----------- Fix default option for repeats Commit: ee4f58ce7d6a81477e5e4fc3e544e5da909f1198 https://github.com/galaxyproject/galaxy/commit/ee4f58ce7d6a81477e5e4fc3e544… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-section.js M static/maps/mvc/form/form-section.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-section.js Log Message: ----------- Merge pull request #1635 from guerler/fix_repeat_default_001 [16.01] Fix default option for repeats Commit: 9170865dfbe0f8588ec47449e683236e5ba92a39 https://github.com/galaxyproject/galaxy/commit/9170865dfbe0f8588ec47449e683… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/lda_datasets.py Log Message: ----------- Merge pull request #1634 from martenson/remove-utilparams [16.01] libraries: remove forgotten util.params that fails when POSTing a payload {} Commit: afc5f2a45399c474d86f1530a62afe280a0eb3be https://github.com/galaxyproject/galaxy/commit/afc5f2a45399c474d86f1530a62a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M lib/galaxy/config.py Log Message: ----------- Fix: Use dependency resolvers if any config exists. This way resolvers like the Module resolver work even if tool_dependency_dir is not set. Commit: 50ea4694af82ac33eaac1ddc9ca8aee1e71e1f00 https://github.com/galaxyproject/galaxy/commit/50ea4694af82ac33eaac1ddc9ca8… Author: Mark Einon <mark.einon(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M scripts/binary_compatibility.py Log Message: ----------- Change python print() format to be backward compatible with older versions In python versions prior to 3.1, the print("{}", .format(x)) form throws an error, use the more compatible print("{0}", .format(x)) form instead. Commit: 85eccba79151a545af1e7aa07f24cece9c5398bd https://github.com/galaxyproject/galaxy/commit/85eccba79151a545af1e7aa07f24… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M templates/user/info.mako M templates/user/username.mako Log Message: ----------- Public name is mandatory not optional, update help text. Commit: e4e48941a6174a148cde06ef2218ef6480568716 https://github.com/galaxyproject/galaxy/commit/e4e48941a6174a148cde06ef2218… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M scripts/binary_compatibility.py Log Message: ----------- Merge pull request #1651 from jmchilton/backport_print_fix [16.01] Backport print fix. Commit: 916ddb575f40c445a47cf91a58aad00bf9360ae8 https://github.com/galaxyproject/galaxy/commit/916ddb575f40c445a47cf91a58aa… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M lib/galaxy/config.py Log Message: ----------- Merge pull request #1648 from jmchilton/dependencies_conf [16.01] Fix use_tool_dependencies for non-default dependency_resolver_conf files. Commit: 6635e91170b310beafe629bc2956607234c41cb0 https://github.com/galaxyproject/galaxy/commit/6635e91170b310beafe629bc2956… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Bump gx pip version to fix OSX platform issues. Commit: 05e68addbe846a8f39cd1192285f936df166bf35 https://github.com/galaxyproject/galaxy/commit/05e68addbe846a8f39cd1192285f… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #1652 from dannon/pip_bump [16.01] Bump gx pip version to fix OSX platform issues. Commit: 39aff8457201fc383d49cc8e90798795b7923189 https://github.com/galaxyproject/galaxy/commit/39aff8457201fc383d49cc8e9079… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M templates/user/info.mako M templates/user/username.mako Log Message: ----------- Merge pull request #1655 from jmchilton/public-name-fixes [16.01] Public name is mandatory not optional, update help text. Commit: a8be2222ebb448ebac5996a2a9a042d0d618344f https://github.com/galaxyproject/galaxy/commit/a8be2222ebb448ebac5996a2a9a0… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/style/less/base.less M lib/galaxy/config.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/objectstore/__init__.py M lib/galaxy/util/__init__.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M scripts/common_startup.sh M static/maps/mvc/form/form-section.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-section.js M static/style/blue/base.css M templates/user/info.mako M templates/user/username.mako Log Message: ----------- Merge branch 'release_16.01' into dev Conflicts: static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map static/style/blue/base.css Commit: 1d6208f9ae317b1d10aed49cdcd2c9f653c9c8b8 https://github.com/galaxyproject/galaxy/commit/1d6208f9ae317b1d10aed49cdcd2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/style/less/base.less M lib/galaxy/config.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/objectstore/__init__.py M lib/galaxy/util/__init__.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M scripts/common_startup.sh M static/maps/mvc/form/form-section.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-section.js M static/style/blue/base.css M templates/user/info.mako M templates/user/username.mako Log Message: ----------- Merge pull request #1656 from nsoranzo/merge_16.01_into_dev Merge 16.01 into dev. Compare: https://github.com/galaxyproject/galaxy/compare/a5c4e0402547...1d6208f9ae31

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[galaxyproject/galaxy] 85eccb: Public name is mandatory not optional, update help...
by GitHub 02 Feb '16

02 Feb '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 85eccba79151a545af1e7aa07f24cece9c5398bd https://github.com/galaxyproject/galaxy/commit/85eccba79151a545af1e7aa07f24… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M templates/user/info.mako M templates/user/username.mako Log Message: ----------- Public name is mandatory not optional, update help text. Commit: 39aff8457201fc383d49cc8e90798795b7923189 https://github.com/galaxyproject/galaxy/commit/39aff8457201fc383d49cc8e9079… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M templates/user/info.mako M templates/user/username.mako Log Message: ----------- Merge pull request #1655 from jmchilton/public-name-fixes [16.01] Public name is mandatory not optional, update help text. Compare: https://github.com/galaxyproject/galaxy/compare/05e68addbe84...39aff8457201

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[galaxyproject/galaxy] 6635e9: Bump gx pip version to fix OSX platform issues.
by GitHub 02 Feb '16

02 Feb '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 6635e91170b310beafe629bc2956607234c41cb0 https://github.com/galaxyproject/galaxy/commit/6635e91170b310beafe629bc2956… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Bump gx pip version to fix OSX platform issues. Commit: 05e68addbe846a8f39cd1192285f936df166bf35 https://github.com/galaxyproject/galaxy/commit/05e68addbe846a8f39cd1192285f… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #1652 from dannon/pip_bump [16.01] Bump gx pip version to fix OSX platform issues. Compare: https://github.com/galaxyproject/galaxy/compare/916ddb575f40...05e68addbe84

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