Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 1c73b8c1a335881d2b1573cc954d1c0ed1438c65
https://github.com/galaxyproject/galaxy/commit/1c73b8c1a335881d2b1573cc954d…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M lib/tool_shed/galaxy_install/repair_repository_manager.py
M lib/tool_shed/galaxy_install/update_repository_manager.py
Log Message:
-----------
also update rrda when repairing or updating a repository
Commit: 887e2577c98244a223cbc8ef0523fa8d1a4ae352
https://github.com/galaxyproject/galaxy/commit/887e2577c98244a223cbc8ef0523…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-03-04 (Fri, 04 Mar 2016)
Changed paths:
M lib/tool_shed/util/shed_util_common.py
Log Message:
-----------
Add logging before removing outdated dependencies
Commit: 6da3c56ec9e6e644847eee417e2b3f4b5b5078c0
https://github.com/galaxyproject/galaxy/commit/6da3c56ec9e6e644847eee417e2b…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2016-03-04 (Fri, 04 Mar 2016)
Changed paths:
M lib/tool_shed/galaxy_install/repair_repository_manager.py
M lib/tool_shed/galaxy_install/update_repository_manager.py
M lib/tool_shed/util/shed_util_common.py
Log Message:
-----------
Merge pull request #1850 from mvdbeek/old_rrda_fix
also update rrda when repairing or updating a repository
Compare: https://github.com/galaxyproject/galaxy/compare/45bffbcd1915...6da3c56ec9e6
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 8dd24734e3fd9dd64bc4bd93736c9ef571930cbf
https://github.com/galaxyproject/galaxy/commit/8dd24734e3fd9dd64bc4bd93736c…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M client/galaxy/scripts/onload.js
M static/maps/onload.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/onload.js
Log Message:
-----------
Minor followup to 1846
Commit: 45bffbcd19158e6f147398d07d3f691f18d50247
https://github.com/galaxyproject/galaxy/commit/45bffbcd19158e6f147398d07d3f…
Author: Aysam Guerler <aysam.guerler(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M client/galaxy/scripts/onload.js
M static/maps/onload.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/onload.js
Log Message:
-----------
Merge pull request #1853 from dannon/style_nits
Minor style followup to 1846
Compare: https://github.com/galaxyproject/galaxy/compare/02ed07ca82e1...45bffbcd1915
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 6e13c3999a6d54b40b2910d5ce95da724f133122
https://github.com/galaxyproject/galaxy/commit/6e13c3999a6d54b40b2910d5ce95…
Author: Dave Bouvier <dave(a)bx.psu.edu>
Date: 2016-02-29 (Mon, 29 Feb 2016)
Changed paths:
M lib/galaxy/web/form_builder.py
M lib/galaxy/webapps/tool_shed/api/categories.py
M lib/galaxy/webapps/tool_shed/api/repositories.py
M lib/galaxy/webapps/tool_shed/buildapp.py
M lib/galaxy/webapps/tool_shed/controllers/repository.py
M lib/galaxy/webapps/tool_shed/model/__init__.py
M lib/galaxy/webapps/tool_shed/model/mapping.py
M lib/tool_shed/util/common_util.py
M lib/tool_shed/util/metadata_util.py
M lib/tool_shed/util/repository_util.py
M lib/tool_shed/util/shed_util_common.py
M lib/tool_shed/util/tool_util.py
M test/tool_shed/functional/test_1040_install_repository_basic_circular_dependencies.py
Log Message:
-----------
Cherry-picked changes from pull request #1392.
Commit: 3ec58fd1da5f7122752627eef581d5826190bc13
https://github.com/galaxyproject/galaxy/commit/3ec58fd1da5f7122752627eef581…
Author: Dave Bouvier <dave(a)bx.psu.edu>
Date: 2016-02-29 (Mon, 29 Feb 2016)
Changed paths:
M lib/galaxy/webapps/tool_shed/api/repositories.py
Log Message:
-----------
Update API endpoint names in code comments.
Commit: b15a7ff06df23d7004f670f34638fe9ee5d33f92
https://github.com/galaxyproject/galaxy/commit/b15a7ff06df23d7004f670f34638…
Author: Dave Bouvier <dave(a)bx.psu.edu>
Date: 2016-03-01 (Tue, 01 Mar 2016)
Changed paths:
M lib/galaxy/webapps/tool_shed/api/categories.py
M lib/tool_shed/util/shed_util_common.py
Log Message:
-----------
Include repository metadata when browsing repositories in a category.
Commit: 02ed07ca82e19e20b37e50e9f6294069240d9ed1
https://github.com/galaxyproject/galaxy/commit/02ed07ca82e19e20b37e50e9f629…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M lib/galaxy/web/form_builder.py
M lib/galaxy/webapps/tool_shed/api/categories.py
M lib/galaxy/webapps/tool_shed/api/repositories.py
M lib/galaxy/webapps/tool_shed/buildapp.py
M lib/galaxy/webapps/tool_shed/controllers/repository.py
M lib/galaxy/webapps/tool_shed/model/__init__.py
M lib/galaxy/webapps/tool_shed/model/mapping.py
M lib/tool_shed/util/common_util.py
M lib/tool_shed/util/metadata_util.py
M lib/tool_shed/util/repository_util.py
M lib/tool_shed/util/shed_util_common.py
M lib/tool_shed/util/tool_util.py
M test/tool_shed/functional/test_1040_install_repository_basic_circular_dependencies.py
Log Message:
-----------
Merge pull request #1821 from davebx/toolshed_decouple_api
Cherry-picked changes from pull request #1392.
Compare: https://github.com/galaxyproject/galaxy/compare/779793810d1f...02ed07ca82e1
Branch: refs/heads/release_16.01
Home: https://github.com/galaxyproject/galaxy
Commit: e0ce68cc58a6d6eeb306f5c0445563e71bcc1d12
https://github.com/galaxyproject/galaxy/commit/e0ce68cc58a6d6eeb306f5c04455…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M lib/galaxy/tools/parameters/output_collect.py
Log Message:
-----------
Fix lack of output when discovering large collections...
Example log statement collected for each dataset:
```
galaxy.tools.parameters.output_collect DEBUG 2016-03-03 11:47:31,302 (8) Created dynamic collection dataset for path [/home/john/workspace/galaxy/database/job_working_directory/000/8/oe2_ie2.fq] with element identifier [oe2:ie2] for output [list_output].
```
Commit: 0fbd22c9a30686afe62de1e1f23ff309dd6374a8
https://github.com/galaxyproject/galaxy/commit/0fbd22c9a30686afe62de1e1f23f…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M lib/galaxy/tools/parameters/output_collect.py
Log Message:
-----------
Merge pull request #1852 from jmchilton/dataset_collection_log
[16.01] Fix lack of log output when discovering large collections...
Compare: https://github.com/galaxyproject/galaxy/compare/de70306407c0...0fbd22c9a306
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 1220e2e9788026af7b7047720d03f7bb097f5762
https://github.com/galaxyproject/galaxy/commit/1220e2e9788026af7b7047720d03…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M client/galaxy/scripts/onload.js
M static/maps/onload.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/onload.js
Log Message:
-----------
Prevent tours from kicking off within iframes, causing duplicate tour step display.
Commit: 80bcb987c84a8331c84db864a557f326594afd91
https://github.com/galaxyproject/galaxy/commit/80bcb987c84a8331c84db864a557…
Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com>
Date: 2016-03-03 (Thu, 03 Mar 2016)
Changed paths:
M client/galaxy/scripts/onload.js
M static/maps/onload.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/onload.js
Log Message:
-----------
Merge pull request #1846 from dannon/tour_iframe_bug
Prevent tours from kicking off within iframes
Compare: https://github.com/galaxyproject/galaxy/compare/9b0c491729de...80bcb987c84a