galaxy-commits July 2016

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[galaxyproject/galaxy] e37850: UI, HDCAs: render element_count when available
by GitHub 21 Jul '16

21 Jul '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e37850386ecc8122abeb6695ffc76eb513f34516 https://github.com/galaxyproject/galaxy/commit/e37850386ecc8122abeb6695ffc7… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M static/maps/mvc/collection/collection-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-li.js Log Message: ----------- UI, HDCAs: render element_count when available - Adds a change event for element_count that renders the subtitle - Subtitle now renders the count or nothing if not available Conflicts: static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map Commit: 6b64af72deafee0382cb5b9c83ed39a3fa42e1c9 https://github.com/galaxyproject/galaxy/commit/6b64af72deafee0382cb5b9c83ed… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/collection/collection-li.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- UI, history: doc updates Conflicts: client/galaxy/scripts/mvc/history/history-contents.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map Commit: 654748763af10aa87d3afe9fdf9ea686520ede7e https://github.com/galaxyproject/galaxy/commit/654748763af10aa87d3afe9fdf9e… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-contents.js Log Message: ----------- UI, history: implement list:list Conflicts: static/maps/mvc/history/history-contents.js.map static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map static/scripts/mvc/history/history-contents.js Commit: d550024d56c063bb78e4855395cfbf0cc440fe08 https://github.com/galaxyproject/galaxy/commit/d550024d56c063bb78e4855395cf… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/history/history-contents.js Log Message: ----------- UI, history: more feedback on bad collection type Conflicts: static/maps/mvc/history/history-contents.js.map static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js static/scripts/bundled/libs.bundled.js.map static/scripts/bundled/login.bundled.js static/scripts/bundled/login.bundled.js.map static/scripts/mvc/history/history-contents.js Commit: 0d49b06bac4a5c4a4b94e48517d1c0f5de713d42 https://github.com/galaxyproject/galaxy/commit/0d49b06bac4a5c4a4b94e48517d1… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/history/history-contents.js Log Message: ----------- repack Commit: 132bd4dd57e084ec8e743e1360e7d2a0faa29ac6 https://github.com/galaxyproject/galaxy/commit/132bd4dd57e084ec8e743e1360e7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-21 (Thu, 21 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-contents.js Log Message: ----------- Merge branch 'backport_2613' into release_16.04 (and rebuild client) Commit: 2b3a0334e0bdfa3ef92c88c7d697eccce447083b https://github.com/galaxyproject/galaxy/commit/2b3a0334e0bdfa3ef92c88c7d697… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-21 (Thu, 21 Jul 2016) Log Message: ----------- Merge branch 'release_16.04' into dev Compare: https://github.com/galaxyproject/galaxy/compare/c6c22a977f97...2b3a0334e0bd

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[galaxyproject/galaxy] e37850: UI, HDCAs: render element_count when available
by GitHub 21 Jul '16

21 Jul '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: e37850386ecc8122abeb6695ffc76eb513f34516 https://github.com/galaxyproject/galaxy/commit/e37850386ecc8122abeb6695ffc7… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M static/maps/mvc/collection/collection-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-li.js Log Message: ----------- UI, HDCAs: render element_count when available - Adds a change event for element_count that renders the subtitle - Subtitle now renders the count or nothing if not available Conflicts: static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map Commit: 6b64af72deafee0382cb5b9c83ed39a3fa42e1c9 https://github.com/galaxyproject/galaxy/commit/6b64af72deafee0382cb5b9c83ed… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/collection/collection-li.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- UI, history: doc updates Conflicts: client/galaxy/scripts/mvc/history/history-contents.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map Commit: 654748763af10aa87d3afe9fdf9ea686520ede7e https://github.com/galaxyproject/galaxy/commit/654748763af10aa87d3afe9fdf9e… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-contents.js Log Message: ----------- UI, history: implement list:list Conflicts: static/maps/mvc/history/history-contents.js.map static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map static/scripts/mvc/history/history-contents.js Commit: d550024d56c063bb78e4855395cfbf0cc440fe08 https://github.com/galaxyproject/galaxy/commit/d550024d56c063bb78e4855395cf… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/history/history-contents.js Log Message: ----------- UI, history: more feedback on bad collection type Conflicts: static/maps/mvc/history/history-contents.js.map static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js static/scripts/bundled/libs.bundled.js.map static/scripts/bundled/login.bundled.js static/scripts/bundled/login.bundled.js.map static/scripts/mvc/history/history-contents.js Commit: 0d49b06bac4a5c4a4b94e48517d1c0f5de713d42 https://github.com/galaxyproject/galaxy/commit/0d49b06bac4a5c4a4b94e48517d1… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/history/history-contents.js Log Message: ----------- repack Commit: 132bd4dd57e084ec8e743e1360e7d2a0faa29ac6 https://github.com/galaxyproject/galaxy/commit/132bd4dd57e084ec8e743e1360e7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-21 (Thu, 21 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-contents.js M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-contents.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-contents.js Log Message: ----------- Merge branch 'backport_2613' into release_16.04 (and rebuild client) Compare: https://github.com/galaxyproject/galaxy/compare/95c64c0ba917...132bd4dd57e0

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[galaxyproject/galaxy] 0303ec: Optimize get_file_peek()
by GitHub 21 Jul '16

21 Jul '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 0303ec33ae2044b9e0f2482cd4cd56a5db6f2664 https://github.com/galaxyproject/galaxy/commit/0303ec33ae2044b9e0f2482cd4cd… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Optimize get_file_peek() last_line was always the empty string because line is read with readline() and therefore '\n' is always its last character (if it is present). Follow-up to #2556. Commit: 9b5f6d60c6dd66a556f22202abcd90c5c2d4858f https://github.com/galaxyproject/galaxy/commit/9b5f6d60c6dd66a556f22202abcd… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Fix smart_str doctest Docstrings should start with 'u"""' if containing Unicode characters (see also PEP 257). Backslashes should be doubled in docstrings (or raw strings should be used, but the 'ur' prefix is not supported in Python3). Commit: c6c22a977f97208ad1196bdc07b53f9e89313123 https://github.com/galaxyproject/galaxy/commit/c6c22a977f97208ad1196bdc07b5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-21 (Thu, 21 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/util/__init__.py Log Message: ----------- Merge pull request #2637 from nsoranzo/get_file_peek Optimize get_file_peek() Compare: https://github.com/galaxyproject/galaxy/compare/715441df84a8...c6c22a977f97

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[galaxyproject/galaxy] 4fabf5: typo in summary statistics tool
by GitHub 20 Jul '16

20 Jul '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4fabf51f4bfa9d7e8392706bdbedc302ca402544 https://github.com/galaxyproject/galaxy/commit/4fabf51f4bfa9d7e8392706bdbed… Author: nturaga <nitesh.turaga(a)gmail.com> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M tools/stats/gsummary.xml Log Message: ----------- typo in summary statistics tool Commit: 715441df84a8cd49d283ec5d800bae8dc982de86 https://github.com/galaxyproject/galaxy/commit/715441df84a8cd49d283ec5d800b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M tools/stats/gsummary.xml Log Message: ----------- Merge pull request #2639 from nturaga/typo_summary_stats_tool typo in summary statistics tool Compare: https://github.com/galaxyproject/galaxy/compare/5fe4bea3aecd...715441df84a8

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[galaxyproject/galaxy] 30fd1e: Test case for dynamically creating `list:list:list...
by GitHub 20 Jul '16

20 Jul '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 30fd1e0e64788b0e08c668b1b48e13e5b4ef4afb https://github.com/galaxyproject/galaxy/commit/30fd1e0e64788b0e08c668b1b48e… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M test/api/test_workflows.py Log Message: ----------- Test case for dynamically creating `list:list:list`s. This could check the outputs ideally, but it was failing to simply execute the workflow so this does serve as check that some bugs are fixed. Commit: 39c095aa6a4fe73fe6e224698b77775dc015f511 https://github.com/galaxyproject/galaxy/commit/39c095aa6a4fe73fe6e224698b77… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/tools/execute.py Log Message: ----------- Improved logging and error message when mapping over an empty* collection. *actually empty or accidentally empty. Commit: 85d7784b18b6199911aee3b7dd6e0389016b87d9 https://github.com/galaxyproject/galaxy/commit/85d7784b18b6199911aee3b7dd6e… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Fix concepts "populated" & "waiting_for_elements" for nested collections. Commit: 54b8ae00dbe71dd9d47496b59b88270e43a09823 https://github.com/galaxyproject/galaxy/commit/54b8ae00dbe71dd9d47496b59b88… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M test/api/test_workflows.py Log Message: ----------- Rework test case that fails occasionally on Jenkins. Should be a little more robust now. Commit: 5fe4bea3aecd69ebfc2867bf31658fd8d635c3b3 https://github.com/galaxyproject/galaxy/commit/5fe4bea3aecd69ebfc2867bf3165… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/execute.py M test/api/test_workflows.py Log Message: ----------- Merge pull request #2634 from jmchilton/list_list_list_problem Fix certain combos of dynamic deeply nested collections in workflows. Compare: https://github.com/galaxyproject/galaxy/compare/f36095a9fb64...5fe4bea3aecd

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[galaxyproject/galaxy] bc79e9: UI, history: replace copy dialog on grid refresh
by GitHub 19 Jul '16

19 Jul '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bc79e9cc4a0f5597d6243f946e034f88106141d1 https://github.com/galaxyproject/galaxy/commit/bc79e9cc4a0f5597d6243f946e03… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- UI, history: replace copy dialog on grid refresh Fixes #2624 init_grid is called from update_grid to rebuild the grid. This patches that call to replace the copy links with the dialog. Note: - related to #1303 which was an effort to make a single code path for copying histories. - Uses monkey patching to keep from porting build artifacts. Commit: 5f24afb1b3eebb7e30cee3958015b972b0bf2b1d https://github.com/galaxyproject/galaxy/commit/5f24afb1b3eebb7e30cee3958015… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fix off by one error, causing only first line of file to be rendered in peek. Commit: 09b9339569d688e89b6f6fb9abc32b8e2b465e28 https://github.com/galaxyproject/galaxy/commit/09b9339569d688e89b6f6fb9abc3… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py A test/unit/datatypes/test_data.py Log Message: ----------- Fixed to only line_count not line_count + 1 lines and added in really basic test Commit: 7e389c7d54da91298c4b5970314c7e5040902952 https://github.com/galaxyproject/galaxy/commit/7e389c7d54da91298c4b5970314c… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fixed E226 Commit: 85671bd466e8bfca0dc22c8fbdc6385a3e9dcf1e https://github.com/galaxyproject/galaxy/commit/85671bd466e8bfca0dc22c8fbdc6… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M test/unit/datatypes/test_data.py Log Message: ----------- Fixed E302 Commit: f4631d2e59af6596afbf571e5cb983e5ce734115 https://github.com/galaxyproject/galaxy/commit/f4631d2e59af6596afbf571e5cb9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge pull request #2629 from carlfeberhard/fix.saved-copy [16.01] UI, history: replace copy dialog on grid refresh Commit: ac64c0162ef5f9c68529ee730326c985f4430280 https://github.com/galaxyproject/galaxy/commit/ac64c0162ef5f9c68529ee730326… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge branch 'release_16.01' into release_16.04 Commit: 95c64c0ba917bfbc5d04ff603ec3ca2a58f6c54f https://github.com/galaxyproject/galaxy/commit/95c64c0ba917bfbc5d04ff603ec3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Rebuild as a part of merging from 16.01. Commit: f36095a9fb647eaa6333c3696e37cdaeb945e5bb https://github.com/galaxyproject/galaxy/commit/f36095a9fb647eaa6333c3696e37… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge branch 'release_16.04' into dev Compare: https://github.com/galaxyproject/galaxy/compare/1e36eba631b2...f36095a9fb64

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[galaxyproject/galaxy] 4ea881: Fix old bug in non-allowed_images.yml GIEs
by GitHub 19 Jul '16

19 Jul '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/galaxy Commit: 4ea881caa21602c5562224fa268ff87788eee0dd https://github.com/galaxyproject/galaxy/commit/4ea881caa21602c5562224fa268f… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2016-06-26 (Sun, 26 Jun 2016) Changed paths: M lib/galaxy/web/base/interactive_environments.py Log Message: ----------- Fix old bug in non-allowed_images.yml GIEs Commit: b713fff00d7c1a6c50e72f69647a6b5cbe3629dd https://github.com/galaxyproject/galaxy/commit/b713fff00d7c1a6c50e72f69647a… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-06-26 (Sun, 26 Jun 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fix off by one error, causing only first line of file to be rendered in peek. Commit: 997fa1577b19d9daa31768731e7cd5f4a19db1e6 https://github.com/galaxyproject/galaxy/commit/997fa1577b19d9daa31768731e7c… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-06-26 (Sun, 26 Jun 2016) Changed paths: M lib/galaxy/datatypes/data.py A test/unit/datatypes/test_data.py Log Message: ----------- Fixed to only line_count not line_count + 1 lines and added in really basic test Commit: 157da746d8c5da8985d71fee578ba68dc104a11f https://github.com/galaxyproject/galaxy/commit/157da746d8c5da8985d71fee578b… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-06-26 (Sun, 26 Jun 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fixed E226 Commit: a68381777df3e6c8165f5b9bdc4d4abf9bee41db https://github.com/galaxyproject/galaxy/commit/a68381777df3e6c8165f5b9bdc4d… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-06-26 (Sun, 26 Jun 2016) Changed paths: M test/unit/datatypes/test_data.py Log Message: ----------- Fixed E302 Commit: 1069a69ae08a4a2db609aebb03c4a8fa53162777 https://github.com/galaxyproject/galaxy/commit/1069a69ae08a4a2db609aebb03c4… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-06-28 (Tue, 28 Jun 2016) Changed paths: M lib/galaxy/web/base/interactive_environments.py Log Message: ----------- Merge pull request #2550 from erasche/asdf [16.04] Fix old bug in non-allowed_images.yml GIEs Commit: c3bf89f75093bfe73f09d0f33dff8df6d60f9269 https://github.com/galaxyproject/galaxy/commit/c3bf89f75093bfe73f09d0f33dff… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-06-28 (Tue, 28 Jun 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/tag.py Log Message: ----------- Fix tag_autocomplete issue. When we swapped to tag manager the signature changed and some of these were missed. Commit: 1507bd37fe8cb872975e46a6e7be468e984db0d8 https://github.com/galaxyproject/galaxy/commit/1507bd37fe8cb872975e46a6e7be… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2016-07-05 (Tue, 05 Jul 2016) Changed paths: M lib/galaxy/web/proxy/js/lib/proxy.js Log Message: ----------- More defensive proxying Commit: f8e40bb5951cc38dce118cebcc09a5cc3ca96930 https://github.com/galaxyproject/galaxy/commit/f8e40bb5951cc38dce118cebcc09… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-07-05 (Tue, 05 Jul 2016) Changed paths: M lib/galaxy/web/proxy/js/lib/proxy.js Log Message: ----------- Merge pull request #2585 from erasche/backport-proxy-fix [16.04] Backport proxy fixes Commit: 7c2c2ca62a069700725c67e08053389b583680e7 https://github.com/galaxyproject/galaxy/commit/7c2c2ca62a069700725c67e08053… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-06 (Wed, 06 Jul 2016) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Tabular dataset chunking fix which should prevent duplicated lines. Skipping to the newline previously shifted the chunk past where it should read. Commit: acdfd2423f3e8764375d0b7a23dad3c919db47fc https://github.com/galaxyproject/galaxy/commit/acdfd2423f3e8764375d0b7a23da… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-06 (Wed, 06 Jul 2016) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Rename vars to be sensible, add comment to clarify what this is doing. Commit: 84d152082009418f2fd5dfe0e9001e8924a678fc https://github.com/galaxyproject/galaxy/commit/84d152082009418f2fd5dfe0e900… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-06 (Wed, 06 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/dataset/data.js M lib/galaxy/datatypes/tabular.py M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- Absolute positioning for tabular dataset chunking, vs abstract chunk. Ships a minimum of one line regardless of size, and relies on client to know position. Commit: ca4b51b390d14077188b5226e4c83ed0991dcbb5 https://github.com/galaxyproject/galaxy/commit/ca4b51b390d14077188b5226e4c8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-06 (Wed, 06 Jul 2016) Changed paths: M static/maps/mvc/dataset/data.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/data.js Log Message: ----------- Make client with new tabular display. Commit: a65faa961ca434901baaaeffe2e5926d4ac523c1 https://github.com/galaxyproject/galaxy/commit/a65faa961ca434901baaaeffe2e5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-06 (Wed, 06 Jul 2016) Changed paths: M lib/galaxy/datatypes/tabular.py M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- Fix tabular chunked display offset=0 request, pass through ck_size to allow client specification of chunk size overriding the app defaults (neither of these are used by the js client currently though) Commit: d7cdf74bdf2690ab1d83cb262021251ae3e28d14 https://github.com/galaxyproject/galaxy/commit/d7cdf74bdf2690ab1d83cb262021… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-06 (Wed, 06 Jul 2016) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Handle the case when the last character of the initial read is a newline. Commit: b7718a0f9ae3a626ab88080e0798a451597984c8 https://github.com/galaxyproject/galaxy/commit/b7718a0f9ae3a626ab88080e0798… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-06 (Wed, 06 Jul 2016) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Swap ck_size default from 0 to None to indicate unset. This does not change any behavior at all, but @nsoranzo requested the change to make usage more clear. Commit: 1d8f39d987217c09048e05e1d5443173eb02a9f2 https://github.com/galaxyproject/galaxy/commit/1d8f39d987217c09048e05e1d544… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-07 (Thu, 07 Jul 2016) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/molecules.py M lib/galaxy/datatypes/text.py M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- Remove old, unused arguments from some display_dataset methods, minor argument tweaks. Commit: 4da2119c2560c68cb716270933959eb8cf3d48ed https://github.com/galaxyproject/galaxy/commit/4da2119c2560c68cb71627093395… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-07 (Thu, 07 Jul 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/datasets.py Log Message: ----------- Remove explicit 'chunk' parameter passthrough in datasets API Commit: ab2e48bae7395661ce1112363fe167968582e919 https://github.com/galaxyproject/galaxy/commit/ab2e48bae7395661ce1112363fe1… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2016-07-08 (Fri, 08 Jul 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/tag.py Log Message: ----------- Merge pull request #2569 from dannon/workflow_tag_fixes [16.04] Fix tag_autocomplete issue in workflow editor. Commit: 05c063b13a3fb4acf99af4ecbeb5d2350369301d https://github.com/galaxyproject/galaxy/commit/05c063b13a3fb4acf99af4ecbeb5… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-07-08 (Fri, 08 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/dataset/data.js M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/molecules.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py M lib/galaxy/webapps/galaxy/api/datasets.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M static/maps/mvc/dataset/data.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/data.js Log Message: ----------- Merge pull request #2587 from dannon/backport_tabular_fix [16.04] Tabular Dataset Display Fixes Commit: aa7ead6dccd2c80152664c31bbf9b27f2f463799 https://github.com/galaxyproject/galaxy/commit/aa7ead6dccd2c80152664c31bbf9… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-07-14 (Thu, 14 Jul 2016) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Strip whitespaces when processing <url_template> content Otherwise download_binary action tries to save the file to an invalid filename. Reported by @remimarenco on IRC. Fix typo. Commit: 8c59d1c953c61b6d73d9bef5c4dda8a8056240b7 https://github.com/galaxyproject/galaxy/commit/8c59d1c953c61b6d73d9bef5c4dd… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-07-15 (Fri, 15 Jul 2016) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Merge pull request #2618 from nsoranzo/release_16.04_fix_download_binary [16.04] Strip whitespaces when processing <url_template> content Commit: dfce1a973012d430823a3dfad6edad08a31df747 https://github.com/galaxyproject/galaxy/commit/dfce1a973012d430823a3dfad6ed… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-18 (Mon, 18 Jul 2016) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- This is an extra hammer swing at #1531 / #1542, which @rmarenco encountered. He said this resolves it. Commit: f9416573325139c6449d9a8959a138d5681d00d8 https://github.com/galaxyproject/galaxy/commit/f9416573325139c6449d9a8959a1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Extra debugging to hopefully shed light on the PJA Async issue with delete intermediates action and new(ish) workflow scheduling. Clarified a few vars. Commit: bc79e9cc4a0f5597d6243f946e034f88106141d1 https://github.com/galaxyproject/galaxy/commit/bc79e9cc4a0f5597d6243f946e03… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- UI, history: replace copy dialog on grid refresh Fixes #2624 init_grid is called from update_grid to rebuild the grid. This patches that call to replace the copy links with the dialog. Note: - related to #1303 which was an effort to make a single code path for copying histories. - Uses monkey patching to keep from porting build artifacts. Commit: 8a5042d15b5b94fb804a1b1488375939dd88c3d2 https://github.com/galaxyproject/galaxy/commit/8a5042d15b5b94fb804a1b148837… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Merge pull request #2626 from dannon/backport_hammerthrow [16.04] Backport workflow fix Commit: 10ac6ee132642e19b8bf0bd60903a85336337571 https://github.com/galaxyproject/galaxy/commit/10ac6ee132642e19b8bf0bd60903… Author: Carl Eberhard <carlfeberhard(a)users.noreply.github.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py A test/unit/datatypes/test_data.py Log Message: ----------- Merge pull request #2556 from ericenns/fix-2461-dataset-peek [16.04] Fix off by one error, causing only first line of file to be rendered … Commit: 5f24afb1b3eebb7e30cee3958015b972b0bf2b1d https://github.com/galaxyproject/galaxy/commit/5f24afb1b3eebb7e30cee3958015… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fix off by one error, causing only first line of file to be rendered in peek. Commit: 09b9339569d688e89b6f6fb9abc32b8e2b465e28 https://github.com/galaxyproject/galaxy/commit/09b9339569d688e89b6f6fb9abc3… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py A test/unit/datatypes/test_data.py Log Message: ----------- Fixed to only line_count not line_count + 1 lines and added in really basic test Commit: 7e389c7d54da91298c4b5970314c7e5040902952 https://github.com/galaxyproject/galaxy/commit/7e389c7d54da91298c4b5970314c… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fixed E226 Commit: 85671bd466e8bfca0dc22c8fbdc6385a3e9dcf1e https://github.com/galaxyproject/galaxy/commit/85671bd466e8bfca0dc22c8fbdc6… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M test/unit/datatypes/test_data.py Log Message: ----------- Fixed E302 Commit: f4631d2e59af6596afbf571e5cb983e5ce734115 https://github.com/galaxyproject/galaxy/commit/f4631d2e59af6596afbf571e5cb9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge pull request #2629 from carlfeberhard/fix.saved-copy [16.01] UI, history: replace copy dialog on grid refresh Commit: ac64c0162ef5f9c68529ee730326c985f4430280 https://github.com/galaxyproject/galaxy/commit/ac64c0162ef5f9c68529ee730326… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge branch 'release_16.01' into release_16.04 Commit: 95c64c0ba917bfbc5d04ff603ec3ca2a58f6c54f https://github.com/galaxyproject/galaxy/commit/95c64c0ba917bfbc5d04ff603ec3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Rebuild as a part of merging from 16.01. Commit: a5b836e9eeead2eab752d79b0e15197b82cb0720 https://github.com/galaxyproject/galaxy/commit/a5b836e9eeead2eab752d79b0e15… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M client/galaxy/scripts/mvc/dataset/data.js M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/molecules.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py M lib/galaxy/jobs/actions/post.py M lib/galaxy/web/base/interactive_environments.py M lib/galaxy/web/proxy/js/lib/proxy.js M lib/galaxy/webapps/galaxy/api/datasets.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/galaxy/webapps/galaxy/controllers/tag.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py M static/maps/mvc/dataset/data.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/data.js M templates/webapps/galaxy/history/grid.mako A test/unit/datatypes/test_data.py Log Message: ----------- Merge branch 'release_16.04' Compare: https://github.com/galaxyproject/galaxy/compare/0ba99fe24609...a5b836e9eeea

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[galaxyproject/galaxy] 95c64c: Rebuild as a part of merging from 16.01.
by GitHub 19 Jul '16

19 Jul '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: 95c64c0ba917bfbc5d04ff603ec3ca2a58f6c54f https://github.com/galaxyproject/galaxy/commit/95c64c0ba917bfbc5d04ff603ec3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Rebuild as a part of merging from 16.01.

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[galaxyproject/galaxy] bc79e9: UI, history: replace copy dialog on grid refresh
by GitHub 19 Jul '16

19 Jul '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: bc79e9cc4a0f5597d6243f946e034f88106141d1 https://github.com/galaxyproject/galaxy/commit/bc79e9cc4a0f5597d6243f946e03… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- UI, history: replace copy dialog on grid refresh Fixes #2624 init_grid is called from update_grid to rebuild the grid. This patches that call to replace the copy links with the dialog. Note: - related to #1303 which was an effort to make a single code path for copying histories. - Uses monkey patching to keep from porting build artifacts. Commit: 5f24afb1b3eebb7e30cee3958015b972b0bf2b1d https://github.com/galaxyproject/galaxy/commit/5f24afb1b3eebb7e30cee3958015… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fix off by one error, causing only first line of file to be rendered in peek. Commit: 09b9339569d688e89b6f6fb9abc32b8e2b465e28 https://github.com/galaxyproject/galaxy/commit/09b9339569d688e89b6f6fb9abc3… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py A test/unit/datatypes/test_data.py Log Message: ----------- Fixed to only line_count not line_count + 1 lines and added in really basic test Commit: 7e389c7d54da91298c4b5970314c7e5040902952 https://github.com/galaxyproject/galaxy/commit/7e389c7d54da91298c4b5970314c… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Fixed E226 Commit: 85671bd466e8bfca0dc22c8fbdc6385a3e9dcf1e https://github.com/galaxyproject/galaxy/commit/85671bd466e8bfca0dc22c8fbdc6… Author: Eric Enns <eric.enns(a)phac-aspc.gc.ca> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M test/unit/datatypes/test_data.py Log Message: ----------- Fixed E302 Commit: f4631d2e59af6596afbf571e5cb983e5ce734115 https://github.com/galaxyproject/galaxy/commit/f4631d2e59af6596afbf571e5cb9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge pull request #2629 from carlfeberhard/fix.saved-copy [16.01] UI, history: replace copy dialog on grid refresh Commit: ac64c0162ef5f9c68529ee730326c985f4430280 https://github.com/galaxyproject/galaxy/commit/ac64c0162ef5f9c68529ee730326… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge branch 'release_16.01' into release_16.04 Compare: https://github.com/galaxyproject/galaxy/compare/10ac6ee13264...ac64c0162ef5

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[galaxyproject/galaxy] bc79e9: UI, history: replace copy dialog on grid refresh
by GitHub 19 Jul '16

19 Jul '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: bc79e9cc4a0f5597d6243f946e034f88106141d1 https://github.com/galaxyproject/galaxy/commit/bc79e9cc4a0f5597d6243f946e03… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- UI, history: replace copy dialog on grid refresh Fixes #2624 init_grid is called from update_grid to rebuild the grid. This patches that call to replace the copy links with the dialog. Note: - related to #1303 which was an effort to make a single code path for copying histories. - Uses monkey patching to keep from porting build artifacts. Commit: f4631d2e59af6596afbf571e5cb983e5ce734115 https://github.com/galaxyproject/galaxy/commit/f4631d2e59af6596afbf571e5cb9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-19 (Tue, 19 Jul 2016) Changed paths: M templates/webapps/galaxy/history/grid.mako Log Message: ----------- Merge pull request #2629 from carlfeberhard/fix.saved-copy [16.01] UI, history: replace copy dialog on grid refresh Compare: https://github.com/galaxyproject/galaxy/compare/85671bd466e8...f4631d2e59af

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