Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: ada0be18f2e975ecdee8b24a4ba1c3ec06327a5d
https://github.com/galaxyproject/galaxy/commit/ada0be18f2e975ecdee8b24a4ba1…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-10-25 (Wed, 25 Oct 2017)
Changed paths:
M test/qunit/Gruntfile.js
M test/qunit/package.json
M test/qunit/test-app.js
M test/qunit/test-common.js
R test/qunit/test-libs/qunit-1.23.1.css
R test/qunit/test-libs/qunit-1.23.1.js
R test/qunit/test-libs/sinon-1.17.7.js
R test/qunit/test-libs/sinon-qunit-1.0.0.js
M test/qunit/tests/form_tests.js
M test/qunit/tests/galaxy-app-base.js
M test/qunit/tests/graph.js
M test/qunit/tests/hda-base.js
M test/qunit/tests/history_contents_model_tests.js
M test/qunit/tests/job-dag.js
M test/qunit/tests/list-of-pairs-collection-creator.js
M test/qunit/tests/masthead_tests.js
M test/qunit/tests/metrics-logger.js
M test/qunit/tests/modal_tests.js
M test/qunit/tests/page_tests.js
M test/qunit/tests/popover_tests.js
M test/qunit/tests/ui_tests.js
M test/qunit/tests/upload_dialog_tests.js
M test/qunit/tests/utils_test.js
M test/qunit/tests/workflow_editor_tests.js
Log Message:
-----------
Updated QUnit testing.
- Update to QUnit from 1.23 to 2.0.
- Update Sinon from 1.17 to 4.0.1.
- Replace sinon-qunit with just basic calls to sinon itself (sinon-qunit not compatible with QUnit 2.0).
- Replace all QUnit globals with dependency injected values (a lot of this had to be done for QUnit 2.0 anyway).
- Improved error reporting in test-common.js if things don't go well loading modules.
- Improved verbose logging in test Gruntfile.
- Replace in-repo sinon and QUnit asserts (JS/CSS) with npm packges.
Commit: 82df013b66f94c3acbf5e77202d9d9dec54c7767
https://github.com/galaxyproject/galaxy/commit/82df013b66f94c3acbf5e77202d9…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-10-26 (Thu, 26 Oct 2017)
Changed paths:
M test/qunit/Gruntfile.js
M test/qunit/package.json
M test/qunit/test-app.js
M test/qunit/test-common.js
R test/qunit/test-libs/qunit-1.23.1.css
R test/qunit/test-libs/qunit-1.23.1.js
R test/qunit/test-libs/sinon-1.17.7.js
R test/qunit/test-libs/sinon-qunit-1.0.0.js
M test/qunit/tests/form_tests.js
M test/qunit/tests/galaxy-app-base.js
M test/qunit/tests/graph.js
M test/qunit/tests/hda-base.js
M test/qunit/tests/history_contents_model_tests.js
M test/qunit/tests/job-dag.js
M test/qunit/tests/list-of-pairs-collection-creator.js
M test/qunit/tests/masthead_tests.js
M test/qunit/tests/metrics-logger.js
M test/qunit/tests/modal_tests.js
M test/qunit/tests/page_tests.js
M test/qunit/tests/popover_tests.js
M test/qunit/tests/ui_tests.js
M test/qunit/tests/upload_dialog_tests.js
M test/qunit/tests/utils_test.js
M test/qunit/tests/workflow_editor_tests.js
Log Message:
-----------
Merge pull request #4855 from jmchilton/qunit_2.0
Updated QUnit testing.
Compare: https://github.com/galaxyproject/galaxy/compare/efc9dbfb6cee...82df013b66f9
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: fd646f57d366dc1df48b86cf557c89105c07df91
https://github.com/galaxyproject/infrastructure-playbook/commit/fd646f57d36…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-10-26 (Thu, 26 Oct 2017)
Changed paths:
M galaxyenv/templates/supervisor/pypiserver.j2
Log Message:
-----------
Set the pypiserver fallback URL to https://pypi instead of http:// due
to PyPI discontinuing redirection of API endpoints. The default should
be fixed with the release of a fix for pypiserver/pypiserver#179.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 08cb278cc9612a70dcb9dd77ff3bfbdfd333ce2b
https://github.com/galaxyproject/galaxy/commit/08cb278cc9612a70dcb9dd77ff3b…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2017-10-26 (Thu, 26 Oct 2017)
Changed paths:
M doc/schema_template.md
M lib/galaxy/tools/xsd/galaxy.xsd
Log Message:
-----------
Add various elements to the Tool XML doc page
In particular:
- macros
- edam_topics
- edam_operations
- environment_variables and subelement
- request_param_translation and subelements
Also:
- reorder elements to follow IUC coding style
- in examples:
- use lowercase ``true`` and ``false`` for boolean attributes
- add/use single quotes
- minor doc fixes
Commit: efc9dbfb6ceeaa3b9e2441a14417ba4f3913b8ef
https://github.com/galaxyproject/galaxy/commit/efc9dbfb6ceeaa3b9e2441a14417…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-10-26 (Thu, 26 Oct 2017)
Changed paths:
M doc/schema_template.md
M lib/galaxy/tools/xsd/galaxy.xsd
Log Message:
-----------
Merge pull request #4871 from nsoranzo/tool_schema_improv
Add various elements to the Tool XML doc page
Compare: https://github.com/galaxyproject/galaxy/compare/7cfbb56a550c...efc9dbfb6cee
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 162bddd96c160cbc7bf0e681fa097f14fee0d5e5
https://github.com/galaxyproject/galaxy/commit/162bddd96c160cbc7bf0e681fa09…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-10-25 (Wed, 25 Oct 2017)
Changed paths:
M test/api/test_tools.py
A test/functional/tools/data_source.py
M test/functional/tools/samples_tool_conf.xml
A test/functional/tools/test_data_source.xml
Log Message:
-----------
Simple tests for data source responses.
- Verify a simple data source works when responding via the API.
- Verify a data source sending back a file:// parameter is blocked (GX-2017-0004/GX-2017-0003 - it is tracked different ways in the commit message and in the security issue tracker).
Commit: acf39e8e025a42829a56bbc1adb5cf382daae6b2
https://github.com/galaxyproject/galaxy/commit/acf39e8e025a42829a56bbc1adb5…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-10-26 (Thu, 26 Oct 2017)
Changed paths:
M lib/galaxy/tools/xsd/galaxy.xsd
Log Message:
-----------
Fix tool XSD for data source tools.
I guess it has never been applied to a data source?
Commit: 800a7faf2703823651a450a02257fbbe9b85b077
https://github.com/galaxyproject/galaxy/commit/800a7faf2703823651a450a02257…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-10-26 (Thu, 26 Oct 2017)
Changed paths:
M lib/galaxy/tools/xsd/galaxy.xsd
M test/api/test_tools.py
A test/functional/tools/data_source.py
M test/functional/tools/samples_tool_conf.xml
A test/functional/tools/test_data_source.xml
Log Message:
-----------
Merge pull request #4863 from jmchilton/data_source_security_tests
Simple tests for data source responses.
Compare: https://github.com/galaxyproject/galaxy/compare/1ceb778b6381...800a7faf2703