September 2017 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] b17fbf: Fix startup of galaxy when wehbooks dir is empty
by GitHub 14 Sep '17

14 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b17fbfb968b8921729798c909220e522abfb29fd https://github.com/galaxyproject/galaxy/commit/b17fbfb968b8921729798c909220… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M lib/galaxy/webhooks/__init__.py Log Message: ----------- Fix startup of galaxy when wehbooks dir is empty Reported by @alpapan on gitter. Commit: c86bf78c6a966b52d3c9e21ffae71bbf134ecdb4 https://github.com/galaxyproject/galaxy/commit/c86bf78c6a966b52d3c9e21ffae7… Author: Eric Rasche <hxr(a)hx42.org> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M lib/galaxy/webhooks/__init__.py Log Message: ----------- Merge pull request #4570 from mvdbeek/webhook_loading_fix [17.05] Bug: Fix startup of galaxy when wehbooks dir is empty Commit: 7fdce2efd951f79e8ad5a4e2cf9fe8d04340454d https://github.com/galaxyproject/galaxy/commit/7fdce2efd951f79e8ad5a4e2cf9f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Allow fetchMore to actually specify a 0 offset when intentional. This should fix the mysterious missing history in multiview bug. Commit: 14ceb6d91b57563f1203ccd82312b96fdafa8698 https://github.com/galaxyproject/galaxy/commit/14ceb6d91b57563f1203ccd82312… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge pull request #4615 from dannon/release_16.10_backport2 [16.10] Allow fetchMore to actually specify a 0 offset when intentional, fixes multiview Commit: a9facdc7568f68af06ba7474611feeeabf60466b https://github.com/galaxyproject/galaxy/commit/a9facdc7568f68af06ba7474611f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Commit: 83b363d5207625b916523b7d08b4fff26e8379ed https://github.com/galaxyproject/galaxy/commit/83b363d5207625b916523b7d08b4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge branch 'release_17.01' into release_17.05 Commit: 8b9e91310fd98c9e21bc3511df940b0cba5720b7 https://github.com/galaxyproject/galaxy/commit/8b9e91310fd98c9e21bc3511df94… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M lib/galaxy/webhooks/__init__.py Log Message: ----------- Merge branch 'release_17.05' into dev Compare: https://github.com/galaxyproject/galaxy/compare/95969267c226...8b9e91310fd9

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[galaxyproject/galaxy] 7fdce2: Allow fetchMore to actually specify a 0 offset whe...
by GitHub 14 Sep '17

14 Sep '17

Branch: refs/heads/release_17.05 Home: https://github.com/galaxyproject/galaxy Commit: 7fdce2efd951f79e8ad5a4e2cf9fe8d04340454d https://github.com/galaxyproject/galaxy/commit/7fdce2efd951f79e8ad5a4e2cf9f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Allow fetchMore to actually specify a 0 offset when intentional. This should fix the mysterious missing history in multiview bug. Commit: 14ceb6d91b57563f1203ccd82312b96fdafa8698 https://github.com/galaxyproject/galaxy/commit/14ceb6d91b57563f1203ccd82312… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge pull request #4615 from dannon/release_16.10_backport2 [16.10] Allow fetchMore to actually specify a 0 offset when intentional, fixes multiview Commit: a9facdc7568f68af06ba7474611feeeabf60466b https://github.com/galaxyproject/galaxy/commit/a9facdc7568f68af06ba7474611f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Commit: 83b363d5207625b916523b7d08b4fff26e8379ed https://github.com/galaxyproject/galaxy/commit/83b363d5207625b916523b7d08b4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge branch 'release_17.01' into release_17.05 Compare: https://github.com/galaxyproject/galaxy/compare/c86bf78c6a96...83b363d52076

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[galaxyproject/galaxy] 7fdce2: Allow fetchMore to actually specify a 0 offset whe...
by GitHub 14 Sep '17

14 Sep '17

Branch: refs/heads/release_17.01 Home: https://github.com/galaxyproject/galaxy Commit: 7fdce2efd951f79e8ad5a4e2cf9fe8d04340454d https://github.com/galaxyproject/galaxy/commit/7fdce2efd951f79e8ad5a4e2cf9f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Allow fetchMore to actually specify a 0 offset when intentional. This should fix the mysterious missing history in multiview bug. Commit: 14ceb6d91b57563f1203ccd82312b96fdafa8698 https://github.com/galaxyproject/galaxy/commit/14ceb6d91b57563f1203ccd82312… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge pull request #4615 from dannon/release_16.10_backport2 [16.10] Allow fetchMore to actually specify a 0 offset when intentional, fixes multiview Commit: a9facdc7568f68af06ba7474611feeeabf60466b https://github.com/galaxyproject/galaxy/commit/a9facdc7568f68af06ba7474611f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Compare: https://github.com/galaxyproject/galaxy/compare/759780b72c03...a9facdc7568f

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[galaxyproject/galaxy] 7fdce2: Allow fetchMore to actually specify a 0 offset whe...
by GitHub 14 Sep '17

14 Sep '17

Branch: refs/heads/release_16.10 Home: https://github.com/galaxyproject/galaxy Commit: 7fdce2efd951f79e8ad5a4e2cf9fe8d04340454d https://github.com/galaxyproject/galaxy/commit/7fdce2efd951f79e8ad5a4e2cf9f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Allow fetchMore to actually specify a 0 offset when intentional. This should fix the mysterious missing history in multiview bug. Commit: 14ceb6d91b57563f1203ccd82312b96fdafa8698 https://github.com/galaxyproject/galaxy/commit/14ceb6d91b57563f1203ccd82312… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/package.json M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge pull request #4615 from dannon/release_16.10_backport2 [16.10] Allow fetchMore to actually specify a 0 offset when intentional, fixes multiview Compare: https://github.com/galaxyproject/galaxy/compare/140c570517df...14ceb6d91b57

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[galaxyproject/galaxy] 4f93f8: Allow fetchMore to actually specify a 0 offset whe...
by GitHub 14 Sep '17

14 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4f93f88f0a2df07c5a8c3fa7c62fd4bda40fb3c1 https://github.com/galaxyproject/galaxy/commit/4f93f88f0a2df07c5a8c3fa7c62f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M static/maps/mvc/base/controlled-fetch-collection.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Allow fetchMore to actually specify a 0 offset when intentional. This should fix the mysterious missing history in multiview bug. Commit: 1502e0067552b72b87853834d3f857a409ead379 https://github.com/galaxyproject/galaxy/commit/1502e0067552b72b87853834d3f8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/history/history-model.js M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/history/history-model.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Some cruft fixing and configuring of Galaxy.debug output instead of commented out console.logs -- should help immensely for troubleshooting Commit: 62e73a37d3736063113f2118b3e997449e54c75e https://github.com/galaxyproject/galaxy/commit/62e73a37d3736063113f2118b3e9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/toolshed/scripts/mvc/groups/group-list-view.js M lib/galaxy/app.py M lib/galaxy/datatypes/registry.py M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/tools/actions/metadata.py M lib/galaxy/tools/evaluation.py M lib/galaxy_ext/metadata/set_metadata.py M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into fix_missing_histories Commit: 95969267c226193152e62b537824e6567144c1db https://github.com/galaxyproject/galaxy/commit/95969267c226193152e62b537824… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/history/history-model.js M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/history/history-model.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js Log Message: ----------- Merge pull request #4610 from dannon/fix_missing_histories Multiview missing histories fix Compare: https://github.com/galaxyproject/galaxy/compare/cdb95d604573...95969267c226

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[galaxyproject/galaxy] 38add8: remove unused cruft
by GitHub 14 Sep '17

14 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 38add849710c4e7bb8d350dfae2d7b86b7c8b50b https://github.com/galaxyproject/galaxy/commit/38add849710c4e7bb8d350dfae2d… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/toolshed/scripts/mvc/groups/group-list-view.js M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- remove unused cruft Commit: 2daf4317f1f22a683ae29f44e566ad9c2bf4883e https://github.com/galaxyproject/galaxy/commit/2daf4317f1f22a683ae29f44e566… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-librarylist-view.js M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- show the first page of search results insted of the current selected (would hide short resutls) Commit: bf8940071372d0244314795723a24118b3c622bf https://github.com/galaxyproject/galaxy/commit/bf8940071372d0244314795723a2… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-librarylist-view.js M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- remove unused requirements thanks @anuprulez Commit: cdca22b33e84053df4c6aa6eae7b2d9f5157d9a7 https://github.com/galaxyproject/galaxy/commit/cdca22b33e84053df4c6aa6eae7b… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map Log Message: ----------- rebuild client Commit: cdb95d6045739175e440e68e643e0f4cebadfe50 https://github.com/galaxyproject/galaxy/commit/cdb95d6045739175e440e68e643e… Author: Eric Rasche <hxr(a)hx42.org> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/toolshed/scripts/mvc/groups/group-list-view.js M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- Merge pull request #4594 from martenson/fix-search-pagination Fix datalib search pagination Compare: https://github.com/galaxyproject/galaxy/compare/a9bfb04caa41...cdb95d604573

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[galaxyproject/galaxy] e76960: remove cruft
by GitHub 14 Sep '17

14 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e7696027e489c0438fda83293b0efb04a494e465 https://github.com/galaxyproject/galaxy/commit/e7696027e489c0438fda83293b0e… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-library-view.js Log Message: ----------- remove cruft Commit: 1f69ae5d5bc58a31963a91df2e74807c5746d76b https://github.com/galaxyproject/galaxy/commit/1f69ae5d5bc58a31963a91df2e74… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- refactor few functionas and rename variables Commit: d63601eacf2ae5de703a24efb470255ee8baf535 https://github.com/galaxyproject/galaxy/commit/d63601eacf2ae5de703a24efb470… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- fix the bug with accessing length instead of the variable itself Commit: ba3ffd82d3a56d9ae66e462d0fe82979e5e70a66 https://github.com/galaxyproject/galaxy/commit/ba3ffd82d3a56d9ae66e462d0fe8… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map Log Message: ----------- rebuild client Commit: a9bfb04caa41129ffb524b1caf880f1ce90544b5 https://github.com/galaxyproject/galaxy/commit/a9bfb04caa41129ffb524b1caf88… Author: Eric Rasche <hxr(a)hx42.org> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js Log Message: ----------- Merge pull request #4595 from martenson/datalib-various-fixes Datalibs various fixes Compare: https://github.com/galaxyproject/galaxy/compare/a6acf116cd50...a9bfb04caa41

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[galaxyproject/galaxy] 191d11: Python 3 fixes for set_metadata.py
by GitHub 13 Sep '17

13 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 191d11c4a096df44e3e469328197358d6200dd20 https://github.com/galaxyproject/galaxy/commit/191d11c4a096df44e3e469328197… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M lib/galaxy_ext/metadata/set_metadata.py Log Message: ----------- Python 3 fixes for set_metadata.py Commit: b442113e76fde691577bf14bfd0717fcca166539 https://github.com/galaxyproject/galaxy/commit/b442113e76fde691577bf14bfd07… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M lib/galaxy_ext/metadata/set_metadata.py Log Message: ----------- Don't use + on iterators. Commit: a6acf116cd50aec61fbf9d670145e30f2273a5fc https://github.com/galaxyproject/galaxy/commit/a6acf116cd50aec61fbf9d670145… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M lib/galaxy_ext/metadata/set_metadata.py Log Message: ----------- Merge pull request #4607 from natefoo/py3-set-meta Python 3 fixes for set_metadata.py Compare: https://github.com/galaxyproject/galaxy/compare/52436aa4f93d...a6acf116cd50

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[galaxyproject/galaxy] b3b713: Write out registry once per job
by GitHub 13 Sep '17

13 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b3b71343c101ce7ca39ced3308bd2540dcccc59c https://github.com/galaxyproject/galaxy/commit/b3b71343c101ce7ca39ced3308bd… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-12 (Tue, 12 Sep 2017) Changed paths: M lib/galaxy/datatypes/registry.py M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/tools/evaluation.py Log Message: ----------- Write out registry once per job Commit: 51f2ecf857dbbdd0e2fd3c78d7f515a87b0ff7e5 https://github.com/galaxyproject/galaxy/commit/51f2ecf857dbbdd0e2fd3c78d7f5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-12 (Tue, 12 Sep 2017) Changed paths: M lib/galaxy/datatypes/registry.py Log Message: ----------- Use a string template to write registry xml Commit: 49884cdfa3d9cc06192d204c3cc0d727449987d5 https://github.com/galaxyproject/galaxy/commit/49884cdfa3d9cc06192d204c3cc0… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-12 (Tue, 12 Sep 2017) Changed paths: M lib/galaxy/app.py M lib/galaxy/datatypes/registry.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/tools/actions/metadata.py Log Message: ----------- Remove references to integrated_datatypes_config Commit: 194b249e1d53a480a38910d51e24e267d3164a46 https://github.com/galaxyproject/galaxy/commit/194b249e1d53a480a38910d51e24… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-12 (Tue, 12 Sep 2017) Changed paths: M lib/galaxy/datatypes/registry.py Log Message: ----------- Fix import order Commit: 52436aa4f93d13a5d2345deaed7a8f0a343a0074 https://github.com/galaxyproject/galaxy/commit/52436aa4f93d13a5d2345deaed7a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M lib/galaxy/app.py M lib/galaxy/datatypes/registry.py M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/tools/actions/metadata.py M lib/galaxy/tools/evaluation.py Log Message: ----------- Merge pull request #4600 from mvdbeek/datatypes_registroy_in_working_directory Write datatypes registry xml to working directory Compare: https://github.com/galaxyproject/galaxy/compare/11d4380d2b40...52436aa4f93d

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[galaxyproject/usegalaxy-playbook] e7ade3: Changelog for Test Unicycler
by GitHub 13 Sep '17

13 Sep '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e7ade35498d92021d72e35afb194ec93078471bd https://github.com/galaxyproject/usegalaxy-playbook/commit/e7ade35498d92021… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M CHANGELOG.md Log Message: ----------- Changelog for Test Unicycler

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