Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 580811d7405f4566bfb8cb62e3bff5c7cc0e80a7
https://github.com/galaxyproject/galaxy/commit/580811d7405f4566bfb8cb62e3bf…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-09-05 (Tue, 05 Sep 2017)
Changed paths:
M test/selenium_tests/test_published_histories_grid.py
Log Message:
-----------
Potential fix for transiently failing Selenium published histories test.
The the [latest Selenium test execution](https://jenkins.galaxyproject.org/job/selenium/212/testReport/) most of the published histories tests failed. It looks like this is because of the three histories that were supposed to be published, only 2 were actually published. My best guess for what happeend was that the click of the button to publish the history occurred but the next Selenium command happened so quickly that the page had not gotten a chance to respond to the click. This tweaked approach to publishing histories ensures we stay on the page until the "unpublish" link appears - this will either fix the problem or rule this theory out as the explanation.
Commit: a95566b36c18667cca73286f463b89fabeb8fbf8
https://github.com/galaxyproject/galaxy/commit/a95566b36c18667cca73286f463b…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2017-09-06 (Wed, 06 Sep 2017)
Changed paths:
M test/selenium_tests/test_published_histories_grid.py
Log Message:
-----------
Merge pull request #4562 from jmchilton/selenium_fixes_19
Potential fix for transiently failing Selenium published histories test.
Compare: https://github.com/galaxyproject/galaxy/compare/37802abee2b5...a95566b36c18
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 46c85ffa986ec2211bbda7be4f90ab579d3fff69
https://github.com/galaxyproject/galaxy/commit/46c85ffa986ec2211bbda7be4f90…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2017-09-05 (Tue, 05 Sep 2017)
Changed paths:
M lib/galaxy/datatypes/sniff.py
M lib/galaxy/util/checkers.py
M lib/galaxy/util/compression_utils.py
M lib/tool_shed/util/commit_util.py
M tools/data_source/upload.py
Log Message:
-----------
Allow working with pbzip2 compressed files
This adds supprt for uploading and uncompressing pbzip2 compressed
files by exchanging the bz2 module with bz2file (recommended as workaround in
https://docs.python.org/2/library/bz2.html). The problem was reported by
@alpapan in #4538 and this commit should fix #4538.
Depends on https://github.com/galaxyproject/starforge/pull/147 for the
bz2file wheel.
Commit: 4de0ec59f396868c5b56fb139929672c5ac8c3cd
https://github.com/galaxyproject/galaxy/commit/4de0ec59f396868c5b56fb139929…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2017-09-05 (Tue, 05 Sep 2017)
Changed paths:
M lib/galaxy/dependencies/pinned-requirements.txt
M lib/galaxy/dependencies/requirements.txt
Log Message:
-----------
Add bz2file to list of requirements
Commit: cccf79ac5f1d4ef8dcd6d66585b5cc7966847bca
https://github.com/galaxyproject/galaxy/commit/cccf79ac5f1d4ef8dcd6d66585b5…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2017-09-05 (Tue, 05 Sep 2017)
Changed paths:
M lib/galaxy/datatypes/sniff.py
M lib/galaxy/dependencies/__init__.py
M lib/galaxy/dependencies/conditional-requirements.txt
M lib/galaxy/dependencies/pinned-requirements.txt
M lib/galaxy/dependencies/requirements.txt
M lib/galaxy/util/checkers.py
M lib/galaxy/util/compression_utils.py
M lib/tool_shed/util/commit_util.py
M tools/data_source/upload.py
Log Message:
-----------
Make bz2file dependency conditional on python being below version 3.3
Commit: 8c4716e71d600711021041fc31bc8b02972c24c4
https://github.com/galaxyproject/galaxy/commit/8c4716e71d600711021041fc31bc…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2017-09-05 (Tue, 05 Sep 2017)
Changed paths:
M lib/galaxy/dependencies/__init__.py
M lib/galaxy/dependencies/conditional-requirements.txt
M lib/galaxy/dependencies/pinned-requirements.txt
M lib/galaxy/dependencies/requirements.txt
Log Message:
-----------
Use environment markers to select bz2file when python is < 3.3
Commit: 486f436e76b0d3c67514a0d676a85002e5b82f1e
https://github.com/galaxyproject/galaxy/commit/486f436e76b0d3c67514a0d676a8…
Author: Nicola Soranzo <nsoranzo(a)tiscali.it>
Date: 2017-09-06 (Wed, 06 Sep 2017)
Changed paths:
M lib/galaxy/datatypes/sniff.py
M lib/galaxy/dependencies/pinned-requirements.txt
M lib/galaxy/dependencies/requirements.txt
M lib/galaxy/util/checkers.py
M lib/galaxy/util/compression_utils.py
M lib/tool_shed/util/commit_util.py
M tools/data_source/upload.py
Log Message:
-----------
Merge pull request #4559 from mvdbeek/use_bzip2file
Allow working with pbzip2 compressed files
Compare: https://github.com/galaxyproject/galaxy/compare/3aacbdffd63c...486f436e76b0