Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: d5cd53ab8e30934353e4409f32e7039ff9f9f993
https://github.com/galaxyproject/galaxy/commit/d5cd53ab8e30934353e4409f32e7…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
M lib/galaxy/authnz/psa_authnz.py
Log Message:
-----------
Add request to authnz Strategy constructor signature.
Commit: b420363436d3fcd94fdfe4b7f39f697999d3dd3c
https://github.com/galaxyproject/galaxy/commit/b420363436d3fcd94fdfe4b7f39f…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
M lib/galaxy/authnz/psa_authnz.py
Log Message:
-----------
Add session to authnz Strategy constructor signature.
Commit: bc7017664cd625eae9803198ab1d6fbf12999fb1
https://github.com/galaxyproject/galaxy/commit/bc7017664cd625eae9803198ab1d…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
M lib/galaxy/authnz/psa_authnz.py
Log Message:
-----------
Remove trans from authnz Strategy constructor signature.
Commit: 376be2ec9d5d5e13e9d80d512dec20ad61843b89
https://github.com/galaxyproject/galaxy/commit/376be2ec9d5d5e13e9d80d512dec…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/psa_authnz.py
Log Message:
-----------
In psa Strategy, check if request is given asserting for https redirect.
Commit: d15263329ee98470b54c36106ad5f3a352e64af0
https://github.com/galaxyproject/galaxy/commit/d15263329ee98470b54c36106ad5…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
Log Message:
-----------
Remove trans from _extend_cloudauthz_config.
Commit: 74ce3c761129a7c48c1b11ce8ac83db50760d767
https://github.com/galaxyproject/galaxy/commit/74ce3c761129a7c48c1b11ce8ac8…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
M lib/galaxy/managers/cloud.py
Log Message:
-----------
Remove trans from get_cloud_access_credentials.
Commit: ea02d643fdd33aae89aad09c4ed4b59fd157adfb
https://github.com/galaxyproject/galaxy/commit/ea02d643fdd33aae89aad09c4ed4…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
Log Message:
-----------
Update get_cloud_access_credentials doc string.
Commit: eb7653ee8130b6617a4c00bf24b9104b806d1522
https://github.com/galaxyproject/galaxy/commit/eb7653ee8130b6617a4c00bf24b9…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
M lib/galaxy/managers/cloud.py
Log Message:
-----------
Remove `trans.session` dependency for getting cloudauthz tokens.
Commit: 0cdf629d89aaa35d80709171e0e05cd64744fa9e
https://github.com/galaxyproject/galaxy/commit/0cdf629d89aaa35d80709171e0e0…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
M lib/galaxy/managers/cloud.py
Log Message:
-----------
Set request optional with default None in get_cloud_access_credentials.
Commit: 07d3aa9f7913b5c8e2a6da4e561f8055befbd4b9
https://github.com/galaxyproject/galaxy/commit/07d3aa9f7913b5c8e2a6da4e561f…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/psa_authnz.py
Log Message:
-----------
Return path if request is none when building absolute auth backend URI.
Commit: eda2f1a976e551626eeb2ecf5dfbe722929bfb15
https://github.com/galaxyproject/galaxy/commit/eda2f1a976e551626eeb2ecf5dfb…
Author: vahid <jalili.vahid(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/authnz/psa_authnz.py
Log Message:
-----------
Add a missing `z` from `authnz`.
Commit: caec18236d94e63dd155d9551082c360aa69fd0d
https://github.com/galaxyproject/galaxy/commit/caec18236d94e63dd155d9551082…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M lib/galaxy/authnz/managers.py
M lib/galaxy/authnz/psa_authnz.py
M lib/galaxy/managers/cloud.py
Log Message:
-----------
Merge pull request #6838 from VJalili/authnz_trans
Replace trans with session and request in psa Storage
Compare: https://github.com/galaxyproject/galaxy/compare/fb527556019f...caec18236d94
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 10dae9461d36c0e9c7fa8483de6931096a8d79c7
https://github.com/galaxyproject/galaxy/commit/10dae9461d36c0e9c7fa8483de69…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M test/base/populators.py
Log Message:
-----------
Fixes for specifying test_data as a parameter to run_workflow.
Commit: 1e2080242cd01a57eb24b71841d1cfd79626ba4e
https://github.com/galaxyproject/galaxy/commit/1e2080242cd01a57eb24b71841d1…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M test/api/test_workflows.py
M test/api/test_workflows_from_yaml.py
M test/base/workflow_fixtures.py
Log Message:
-----------
Toward newer style gxformat2 definitions.
Commit: 8ba76c9704a999eb51aa466e312d5b6aa1953066
https://github.com/galaxyproject/galaxy/commit/8ba76c9704a999eb51aa466e312d…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M test/api/test_workflows.py
M test/base/workflow_fixtures.py
Log Message:
-----------
Switch to CWL-style format 2 workflow output definitions.
Commit: fd251b16e8cf25d9c883745e8cbee1a178fd6e4e
https://github.com/galaxyproject/galaxy/commit/fd251b16e8cf25d9c883745e8cbe…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
Log Message:
-----------
Rev gxformat2 dependencies to get latest features.
Commit: 915c1a9b66a86485a42c4aab0ac1295924deda4e
https://github.com/galaxyproject/galaxy/commit/915c1a9b66a86485a42c4aab0ac1…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M test/api/test_workflows.py
Log Message:
-----------
Remove unused variable in test_workflows.
Commit: a8843ece349b0334353b9506169f82205f4928be
https://github.com/galaxyproject/galaxy/commit/a8843ece349b0334353b9506169f…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M test/api/test_workflows.py
M test/api/test_workflows_from_yaml.py
M test/base/workflow_fixtures.py
Log Message:
-----------
Allow CWL-style id map for workflow inputs
Commit: fb527556019ffd406387d3eb97a87f717183c4e9
https://github.com/galaxyproject/galaxy/commit/fb527556019ffd406387d3eb97a8…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
M test/api/test_workflows.py
M test/api/test_workflows_from_yaml.py
M test/base/populators.py
M test/base/workflow_fixtures.py
Log Message:
-----------
Merge pull request #6811 from jmchilton/gxformat2_060
Support for Enhancements to gxformat2 (part II)
Compare: https://github.com/galaxyproject/galaxy/compare/afa7299705b9...fb527556019f
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 98a9c86badd87a4db4a815490c06c717b67fced0
https://github.com/galaxyproject/galaxy/commit/98a9c86badd87a4db4a815490c06…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-06 (Sat, 06 Oct 2018)
Changed paths:
M lib/galaxy/tools/tag_collection_from_file.xml
M lib/galaxy/tools/verify/interactor.py
M lib/galaxy/tools/xsd/galaxy.xsd
Log Message:
-----------
Allow testing tags in input collections.
Commit: 9044e614f03b4d0daa3e67e32be15d7d3f1268f1
https://github.com/galaxyproject/galaxy/commit/9044e614f03b4d0daa3e67e32be1…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-10-07 (Sun, 07 Oct 2018)
Changed paths:
M client/package.json
M client/yarn.lock
Log Message:
-----------
Upgrade concurrently; this fixes a 'null' return from webpack run vi aconcurrently, which can fail the build in some situations.
Commit: 58ea67eb457ce154e1d119e94c07a81a1e617ba4
https://github.com/galaxyproject/galaxy/commit/58ea67eb457ce154e1d119e94c07…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-10-07 (Sun, 07 Oct 2018)
Changed paths:
M lib/galaxy/tools/tag_collection_from_file.xml
M lib/galaxy/tools/verify/interactor.py
M lib/galaxy/tools/xsd/galaxy.xsd
Log Message:
-----------
Merge pull request #6823 from jmchilton/tag_input_tests
[18.09] Allow testing tags in input collections.
Commit: b99fedefa81b3ca59c27eb64ea9a7e9865cd9db8
https://github.com/galaxyproject/galaxy/commit/b99fedefa81b3ca59c27eb64ea9a…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/tools/deps/mulled/mulled_build.py
M lib/galaxy/tools/deps/mulled/mulled_build_channel.py
M lib/galaxy/tools/deps/resolvers/conda.py
Log Message:
-----------
Update to latest galaxy-lib
Includes:
- change channel priority ( https://github.com/galaxyproject/galaxy-lib/pull/132 )
- channel cleanup ( https://github.com/galaxyproject/galaxy-lib/pull/136 )
Commit: c83c5cb78475c96d8e49510619c76f737cca5c8e
https://github.com/galaxyproject/galaxy/commit/c83c5cb78475c96d8e49510619c7…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M doc/source/admin/conda_faq.rst
M doc/source/admin/dependency_resolvers.rst
M doc/source/admin/framework_dependencies.rst
M lib/galaxy/dependencies/conda-file.sh
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Change conda channel priority: conda-forge > bioconda
xref. https://github.com/bioconda/bioconda-utils/issues/330
Commit: 9b6833b5a04cea06d245086b7b74a24a524b0064
https://github.com/galaxyproject/galaxy/commit/9b6833b5a04cea06d245086b7b74…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
Log Message:
-----------
make config-rebuild
Commit: 5205ed7eebe4b9a2a25d0f19abd5fd732f42e302
https://github.com/galaxyproject/galaxy/commit/5205ed7eebe4b9a2a25d0f19abd5…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M client/package.json
M client/yarn.lock
Log Message:
-----------
Merge pull request #6828 from dannon/null_exit_bug_fix
[18.09] Upgrade concurrently for 'null' return fix
Commit: a43a60656a49ad0b53574dce61738764cf466287
https://github.com/galaxyproject/galaxy/commit/a43a60656a49ad0b53574dce6173…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/conda_faq.rst
M doc/source/admin/dependency_resolvers.rst
M doc/source/admin/framework_dependencies.rst
M doc/source/admin/galaxy_options.rst
M lib/galaxy/dependencies/conda-file.sh
M lib/galaxy/tools/deps/mulled/mulled_build.py
M lib/galaxy/tools/deps/mulled/mulled_build_channel.py
M lib/galaxy/tools/deps/resolvers/conda.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Merge pull request #6830 from nsoranzo/release_18.09_channel_priority_update
[18.09] Update conda channel priority: conda-forge > bioconda
Commit: afa7299705b92972979d63aa83e6e2f7080b5508
https://github.com/galaxyproject/galaxy/commit/afa7299705b92972979d63aa83e6…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M client/package.json
M client/yarn.lock
M config/galaxy.yml.sample
M doc/source/admin/conda_faq.rst
M doc/source/admin/dependency_resolvers.rst
M doc/source/admin/framework_dependencies.rst
M doc/source/admin/galaxy_options.rst
M lib/galaxy/dependencies/conda-file.sh
M lib/galaxy/tools/deps/mulled/mulled_build.py
M lib/galaxy/tools/deps/mulled/mulled_build_channel.py
M lib/galaxy/tools/deps/resolvers/conda.py
M lib/galaxy/tools/tag_collection_from_file.xml
M lib/galaxy/tools/verify/interactor.py
M lib/galaxy/tools/xsd/galaxy.xsd
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Merge branch 'release_18.09' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/dee3ce981c70...afa7299705b9
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 6b3f6727709350b144e81513b9c22d8c648e203b
https://github.com/galaxyproject/galaxy/commit/6b3f6727709350b144e81513b9c2…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M test/api/test_api_batch.py
M test/api/test_dataset_collections.py
M test/api/test_histories.py
M test/api/test_jobs.py
M test/api/test_pages.py
M test/api/test_tools.py
M test/api/test_tools_upload.py
M test/api/test_workflows_from_yaml.py
M test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py
M test/unit/jobs/test_job_wrapper.py
M test/unit/test_galaxy_mapping.py
M test/unit/tools/test_actions.py
M test/unit/tools/test_collect_primary_datasets.py
M test/unit/tools/test_data_parameters.py
M test/unit/tools/test_evaluation.py
M test/unit/workflows/test_extract_summary.py
Log Message:
-----------
Replace deprecated assertEquals() method
Fix warnings during py34-unit tests like:
```
/home/travis/build/galaxyproject/galaxy/test/unit/workflows/test_extract_summary.py:46: DeprecationWarning: Please use assertEqual instead.
self.assertEquals(job_dict[hda.job], [('out1', derived_hda_2)])
```
See e.g. https://travis-ci.org/galaxyproject/galaxy/jobs/438829277
Commit: 2e6f96bcf661d54886d0d27e703650746380c681
https://github.com/galaxyproject/galaxy/commit/2e6f96bcf661d54886d0d27e7036…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M lib/galaxy/web/base/controller.py
Log Message:
-----------
Remove unneeded parentheses
Commit: f317be200eb1c38c7938e9cc8b5e80f3c9e5dbaa
https://github.com/galaxyproject/galaxy/commit/f317be200eb1c38c7938e9cc8b5e…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M lib/galaxy/web/base/controller.py
M test/api/test_api_batch.py
M test/api/test_dataset_collections.py
M test/api/test_histories.py
M test/api/test_jobs.py
M test/api/test_pages.py
M test/api/test_tools.py
M test/api/test_tools_upload.py
M test/api/test_workflows_from_yaml.py
M test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py
M test/unit/jobs/test_job_wrapper.py
M test/unit/test_galaxy_mapping.py
M test/unit/tools/test_actions.py
M test/unit/tools/test_collect_primary_datasets.py
M test/unit/tools/test_data_parameters.py
M test/unit/tools/test_evaluation.py
M test/unit/workflows/test_extract_summary.py
Log Message:
-----------
Merge pull request #6841 from nsoranzo/assertEqual
Replace deprecated assertEquals() method
Compare: https://github.com/galaxyproject/galaxy/compare/c44b7cf8e8df...f317be200eb1
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/release_18.09
Home: https://github.com/galaxyproject/galaxy
Commit: b99fedefa81b3ca59c27eb64ea9a7e9865cd9db8
https://github.com/galaxyproject/galaxy/commit/b99fedefa81b3ca59c27eb64ea9a…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/tools/deps/mulled/mulled_build.py
M lib/galaxy/tools/deps/mulled/mulled_build_channel.py
M lib/galaxy/tools/deps/resolvers/conda.py
Log Message:
-----------
Update to latest galaxy-lib
Includes:
- change channel priority ( https://github.com/galaxyproject/galaxy-lib/pull/132 )
- channel cleanup ( https://github.com/galaxyproject/galaxy-lib/pull/136 )
Commit: c83c5cb78475c96d8e49510619c76f737cca5c8e
https://github.com/galaxyproject/galaxy/commit/c83c5cb78475c96d8e49510619c7…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M doc/source/admin/conda_faq.rst
M doc/source/admin/dependency_resolvers.rst
M doc/source/admin/framework_dependencies.rst
M lib/galaxy/dependencies/conda-file.sh
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Change conda channel priority: conda-forge > bioconda
xref. https://github.com/bioconda/bioconda-utils/issues/330
Commit: 9b6833b5a04cea06d245086b7b74a24a524b0064
https://github.com/galaxyproject/galaxy/commit/9b6833b5a04cea06d245086b7b74…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
Log Message:
-----------
make config-rebuild
Commit: a43a60656a49ad0b53574dce61738764cf466287
https://github.com/galaxyproject/galaxy/commit/a43a60656a49ad0b53574dce6173…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/conda_faq.rst
M doc/source/admin/dependency_resolvers.rst
M doc/source/admin/framework_dependencies.rst
M doc/source/admin/galaxy_options.rst
M lib/galaxy/dependencies/conda-file.sh
M lib/galaxy/tools/deps/mulled/mulled_build.py
M lib/galaxy/tools/deps/mulled/mulled_build_channel.py
M lib/galaxy/tools/deps/resolvers/conda.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Merge pull request #6830 from nsoranzo/release_18.09_channel_priority_update
[18.09] Update conda channel priority: conda-forge > bioconda
Compare: https://github.com/galaxyproject/galaxy/compare/5205ed7eebe4...a43a60656a49
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: aad1e3fd0ac3c44bba81d7c278beb06b2016117b
https://github.com/galaxyproject/galaxy/commit/aad1e3fd0ac3c44bba81d7c278be…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M lib/galaxy/actions/library.py
M lib/galaxy/managers/base.py
M lib/galaxy/managers/context.py
M lib/galaxy/managers/datasets.py
M lib/galaxy/managers/folders.py
M lib/galaxy/managers/libraries.py
M lib/galaxy/managers/library_datasets.py
M lib/galaxy/managers/rbac_secured.py
M lib/galaxy/managers/users.py
M lib/galaxy/managers/workflows.py
M lib/galaxy/security/__init__.py
M lib/galaxy/tools/__init__.py
M lib/galaxy/tools/actions/upload_common.py
M lib/galaxy/tools/parameters/grouping.py
M lib/galaxy/tools/toolbox/base.py
M lib/galaxy/tools/toolbox/filters/examples.py.sample
M lib/galaxy/web/base/controller.py
M lib/galaxy/web/framework/decorators.py
M lib/galaxy/webapps/galaxy/api/configuration.py
M lib/galaxy/webapps/galaxy/api/folder_contents.py
M lib/galaxy/webapps/galaxy/api/folders.py
M lib/galaxy/webapps/galaxy/api/forms.py
M lib/galaxy/webapps/galaxy/api/groups.py
M lib/galaxy/webapps/galaxy/api/history_contents.py
M lib/galaxy/webapps/galaxy/api/jobs.py
M lib/galaxy/webapps/galaxy/api/libraries.py
M lib/galaxy/webapps/galaxy/api/library_contents.py
M lib/galaxy/webapps/galaxy/api/library_datasets.py
M lib/galaxy/webapps/galaxy/api/pages.py
M lib/galaxy/webapps/galaxy/api/roles.py
M lib/galaxy/webapps/galaxy/api/search.py
M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py
M lib/galaxy/webapps/galaxy/api/tools.py
M lib/galaxy/webapps/galaxy/api/users.py
M lib/galaxy/webapps/galaxy/api/workflows.py
M lib/galaxy/webapps/galaxy/controllers/data_manager.py
M lib/galaxy/webapps/galaxy/controllers/dataset.py
M lib/galaxy/webapps/galaxy/controllers/history.py
M lib/galaxy/webapps/galaxy/controllers/tool_runner.py
M lib/galaxy/webapps/galaxy/controllers/user.py
M lib/galaxy/webapps/tool_shed/api/categories.py
M lib/galaxy/webapps/tool_shed/api/groups.py
M lib/galaxy/webapps/tool_shed/api/repositories.py
M lib/galaxy/webapps/tool_shed/controllers/repository.py
M lib/galaxy/webapps/tool_shed/controllers/repository_review.py
M lib/galaxy/webapps/tool_shed/controllers/user.py
M lib/galaxy/workflow/resources/example.py.sample
M lib/galaxy/workflow/run_request.py
M lib/tool_shed/managers/groups.py
M lib/tool_shed/util/repository_util.py
M templates/galaxy_client_app.mako
M templates/ind_share_base.mako
M templates/show_params.mako
M templates/user/info.mako
M templates/user/register.mako
M templates/webapps/galaxy/galaxy.masthead.mako
M templates/webapps/galaxy/history/share.mako
M templates/webapps/galaxy/workflow/editor.mako
M templates/webapps/tool_shed/common/repository_actions_menu.mako
M templates/webapps/tool_shed/common/reset_metadata_on_selected_repositories.mako
M templates/webapps/tool_shed/repository/manage_repository.mako
M templates/webapps/tool_shed/repository/view_repository.mako
M templates/webapps/tool_shed/role/role.mako
M templates/webapps/tool_shed/user/username.mako
Log Message:
-----------
Convert user_is_admin and user_can_do_run_as to properties
Commit: c44b7cf8e8df53612ca17d8aa2013b5e35695511
https://github.com/galaxyproject/galaxy/commit/c44b7cf8e8df53612ca17d8aa201…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M lib/galaxy/actions/library.py
M lib/galaxy/managers/base.py
M lib/galaxy/managers/context.py
M lib/galaxy/managers/datasets.py
M lib/galaxy/managers/folders.py
M lib/galaxy/managers/libraries.py
M lib/galaxy/managers/library_datasets.py
M lib/galaxy/managers/rbac_secured.py
M lib/galaxy/managers/users.py
M lib/galaxy/managers/workflows.py
M lib/galaxy/security/__init__.py
M lib/galaxy/tools/__init__.py
M lib/galaxy/tools/actions/upload_common.py
M lib/galaxy/tools/parameters/grouping.py
M lib/galaxy/tools/toolbox/base.py
M lib/galaxy/tools/toolbox/filters/examples.py.sample
M lib/galaxy/web/base/controller.py
M lib/galaxy/web/framework/decorators.py
M lib/galaxy/webapps/galaxy/api/configuration.py
M lib/galaxy/webapps/galaxy/api/folder_contents.py
M lib/galaxy/webapps/galaxy/api/folders.py
M lib/galaxy/webapps/galaxy/api/forms.py
M lib/galaxy/webapps/galaxy/api/groups.py
M lib/galaxy/webapps/galaxy/api/history_contents.py
M lib/galaxy/webapps/galaxy/api/jobs.py
M lib/galaxy/webapps/galaxy/api/libraries.py
M lib/galaxy/webapps/galaxy/api/library_contents.py
M lib/galaxy/webapps/galaxy/api/library_datasets.py
M lib/galaxy/webapps/galaxy/api/pages.py
M lib/galaxy/webapps/galaxy/api/roles.py
M lib/galaxy/webapps/galaxy/api/search.py
M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py
M lib/galaxy/webapps/galaxy/api/tools.py
M lib/galaxy/webapps/galaxy/api/users.py
M lib/galaxy/webapps/galaxy/api/workflows.py
M lib/galaxy/webapps/galaxy/controllers/data_manager.py
M lib/galaxy/webapps/galaxy/controllers/dataset.py
M lib/galaxy/webapps/galaxy/controllers/history.py
M lib/galaxy/webapps/galaxy/controllers/tool_runner.py
M lib/galaxy/webapps/galaxy/controllers/user.py
M lib/galaxy/webapps/tool_shed/api/categories.py
M lib/galaxy/webapps/tool_shed/api/groups.py
M lib/galaxy/webapps/tool_shed/api/repositories.py
M lib/galaxy/webapps/tool_shed/controllers/repository.py
M lib/galaxy/webapps/tool_shed/controllers/repository_review.py
M lib/galaxy/webapps/tool_shed/controllers/user.py
M lib/galaxy/workflow/resources/example.py.sample
M lib/galaxy/workflow/run_request.py
M lib/tool_shed/managers/groups.py
M lib/tool_shed/util/repository_util.py
M templates/galaxy_client_app.mako
M templates/ind_share_base.mako
M templates/show_params.mako
M templates/user/info.mako
M templates/user/register.mako
M templates/webapps/galaxy/galaxy.masthead.mako
M templates/webapps/galaxy/history/share.mako
M templates/webapps/galaxy/workflow/editor.mako
M templates/webapps/tool_shed/common/repository_actions_menu.mako
M templates/webapps/tool_shed/common/reset_metadata_on_selected_repositories.mako
M templates/webapps/tool_shed/repository/manage_repository.mako
M templates/webapps/tool_shed/repository/view_repository.mako
M templates/webapps/tool_shed/role/role.mako
M templates/webapps/tool_shed/user/username.mako
Log Message:
-----------
Merge pull request #6835 from natefoo/user-is-admin-property
Convert user_is_admin and user_can_do_run_as to properties
Compare: https://github.com/galaxyproject/galaxy/compare/1f389ae3e773...c44b7cf8e8df
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