1 new changeset in galaxy-central:

http://bitbucket.org/galaxy/galaxy-central/changeset/08859d106924/ changeset: 08859d106924 user: natefoo date: 2011-08-24 20:38:29 summary: Remove unspecified build validator from aggregate_scores_in_intervals2 tool because it can work with a custom fasta. affected #: 1 file (415 bytes)

--- a/tools/stats/aggregate_binned_scores_in_intervals.xml Wed Aug 24 13:58:48 2011 -0400 +++ b/tools/stats/aggregate_binned_scores_in_intervals.xml Wed Aug 24 14:38:29 2011 -0400 @@ -1,4 +1,4 @@ -<tool id="aggregate_scores_in_intervals2" description="such as phastCons, GERP, binCons, and others for a set of genomic intervals" name="Aggregate datapoints" version="1.1.2"> +<tool id="aggregate_scores_in_intervals2" description="such as phastCons, GERP, binCons, and others for a set of genomic intervals" name="Aggregate datapoints" version="1.1.3"><description>Appends the average, min, max of datapoints per interval</description><command interpreter="python"> #if $score_source_type.score_source == "user" #aggregate_scores_in_intervals.py $score_source_type.input2 $input1 ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} $out_file1 --chrom_buffer=3 @@ -6,11 +6,7 @@ #end if# </command><inputs> - <param format="interval" name="input1" type="data" label="Interval file"> - <validator type="unspecified_build" message="Unspecified build, this tool works with data from genome builds hg16, hg17 or hg18. Click the pencil icon in your history item to set the genome build."/> - <validator type="dataset_metadata_in_file" filename="binned_scores.loc" metadata_name="dbkey" metadata_column="0" message="Data is currently not available for the specified build." /> - - </param> + <param format="interval" name="input1" type="data" label="Interval file"/><conditional name="score_source_type"><param name="score_source" type="select" label="Score Source"><option value="cached" selected="true">Locally Cached Scores</option>

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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