Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 704144c16936e6ddedee9d509ee4361f50f152f2 https://github.com/galaxyproject/galaxy/commit/704144c16936e6ddedee9d509ee43... Author: John Chilton jmchilton@gmail.com Date: 2015-11-18 (Wed, 18 Nov 2015)

Changed paths: M lib/galaxy/tools/evaluation.py

Log Message: ----------- Don't let $input hang cheetah evaluation...

If $input is undefined. The Python input command was being used and causing Galaxy to hang during evaluation.

Commit: 0ff8a21891f7780dd30f81047cb5f8112c924b4a https://github.com/galaxyproject/galaxy/commit/0ff8a21891f7780dd30f81047cb5f... Author: John Chilton jmchilton@gmail.com Date: 2015-11-18 (Wed, 18 Nov 2015)

Changed paths: M lib/galaxy/tools/evaluation.py A test/functional/tools/cheetah_problem_unbound_var.xml A test/functional/tools/cheetah_problem_unbound_var_input.xml M test/functional/tools/samples_tool_conf.xml

Log Message: ----------- Add example tools demonstrating cheetah problem (unbound variable).

Refine default override of input to raise an exception instead of just throwing in a dummy string.

Commit: 7dedb3ff18f06b123ac9d64ac1d9b42948ba903c https://github.com/galaxyproject/galaxy/commit/7dedb3ff18f06b123ac9d64ac1d9b... Author: John Chilton jmchilton@gmail.com Date: 2015-11-18 (Wed, 18 Nov 2015)

Changed paths: A test/functional/tools/cheetah_problem_syntax_error.xml M test/functional/tools/samples_tool_conf.xml

Log Message: ----------- Add another cheetah syntax error example...

... ensure the test framework run the tool, detects that there is an error, and handles things appropriately.

Commit: 96b17bd8560f938ee9d3244b6cf5b198864c44ce https://github.com/galaxyproject/galaxy/commit/96b17bd8560f938ee9d3244b6cf5b... Author: Dannon Baker dannon.baker@gmail.com Date: 2015-11-19 (Thu, 19 Nov 2015)

Changed paths: M lib/galaxy/tools/evaluation.py A test/functional/tools/cheetah_problem_syntax_error.xml A test/functional/tools/cheetah_problem_unbound_var.xml A test/functional/tools/cheetah_problem_unbound_var_input.xml M test/functional/tools/samples_tool_conf.xml

Log Message: ----------- Merge pull request #1117 from jmchilton/input_hang

Don't let $input hang cheetah evaluation...

Compare: https://github.com/galaxyproject/galaxy/compare/81f842743d0c...96b17bd8560f