commit/galaxy-central: greg: Add the ability to view the current data tables registry. - galaxy-commits

7 Nov 2012

1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/563d279f69bc/
changeset:   563d279f69bc
user:        greg
date:        2012-11-06 22:11:13
summary:     Add the ability to view the current data tables registry.
affected #:  4 files
diff -r 1911265573315cf71962ac1ae5ca6ba513d051b2 -r 563d279f69bcec68c76a5a3c7c4144b34b614011 lib/galaxy/webapps/galaxy/controllers/admin.py

--- a/lib/galaxy/webapps/galaxy/controllers/admin.py
+++ b/lib/galaxy/webapps/galaxy/controllers/admin.py
@@ -763,3 +763,9 @@
         message = util.restore_text( kwd.get( 'message', '' ) )
         status = util.restore_text( kwd.get( 'status', 'done' ) )
         return trans.fill_template( 'admin/view_datatypes_registry.mako', message=message, status=status )
+    @web.expose
+    @web.require_admin
+    def view_tool_data_tables( self, trans, **kwd ):
+        message = util.restore_text( kwd.get( 'message', '' ) )
+        status = util.restore_text( kwd.get( 'status', 'done' ) )
+        return trans.fill_template( 'admin/view_data_tables_registry.mako', message=message, status=status )
diff -r 1911265573315cf71962ac1ae5ca6ba513d051b2 -r 563d279f69bcec68c76a5a3c7c4144b34b614011 templates/admin/view_data_tables_registry.mako
--- /dev/null
+++ b/templates/admin/view_data_tables_registry.mako
@@ -0,0 +1,42 @@
+<%inherit file="/base.mako"/>
+<%namespace file="/message.mako" import="render_msg" />
+
+%if message:
+    ${render_msg( message, status )}
+%endif
+
+<%
+    ctr = 0
+    data_tables = trans.app.tool_data_tables
+    sorted_data_table_elem_names = sorted( trans.app.tool_data_tables.data_table_elem_names )
+%>
+
+<div class="toolForm">
+    <div class="toolFormTitle">Current data table registry contains ${len( sorted_data_table_elem_names )} data tables</div>
+    <div class="toolFormBody">
+        <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%">
+            <tr>
+                <th bgcolor="#D8D8D8">Name</th>
+                <th bgcolor="#D8D8D8">Tool data path</th>
+                <th bgcolor="#D8D8D8">Missing index file</th>
+            </tr>
+            %for data_table_elem_name in sorted_data_table_elem_names:
+                <% data_table = data_tables[ data_table_elem_name ] %>
+                %if ctr % 2 == 1:
+                    <tr class="odd_row">
+                %else:
+                    <tr class="tr">
+                %endif
+                    <td>${data_table.name}</td>
+                    <td>${data_table.tool_data_path}</td>
+                    <td>
+                        %if data_table.missing_index_file:
+                            ${data_table.missing_index_file}
+                        %endif
+                    </td>
+                </tr>
+                <% ctr += 1 %>
+            %endfor
+        </table>
+    </div>
+</div>
diff -r 1911265573315cf71962ac1ae5ca6ba513d051b2 -r 563d279f69bcec68c76a5a3c7c4144b34b614011 templates/admin/view_datatypes_registry.mako
--- a/templates/admin/view_datatypes_registry.mako
+++ b/templates/admin/view_datatypes_registry.mako
@@ -22,14 +22,14 @@
 %><div class="toolForm">
-    <div class="toolFormTitle">Current datatypes registry contains ${len( sorted_datatypes )} datatypes</div>
+    <div class="toolFormTitle">Current data types registry contains ${len( sorted_datatypes )} data types</div><div class="toolFormBody"><table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%"><tr>
-                <th>Extension</th>
-                <th>Type</th>
-                <th>Mimetype</th>
-                <th>Display in upload</th>
+                <th bgcolor="#D8D8D8">Extension</th>
+                <th bgcolor="#D8D8D8">Type</th>
+                <th bgcolor="#D8D8D8">Mimetype</th>
+                <th bgcolor="#D8D8D8">Display in upload</th></tr>
             %for datatype in sorted_datatypes:
                 %if ctr % 2 == 1:
diff -r 1911265573315cf71962ac1ae5ca6ba513d051b2 -r 563d279f69bcec68c76a5a3c7c4144b34b614011 templates/webapps/galaxy/admin/index.mako
--- a/templates/webapps/galaxy/admin/index.mako
+++ b/templates/webapps/galaxy/admin/index.mako
@@ -65,7 +65,8 @@
                 <div class="toolSectionTitle">Server</div><div class="toolSectionBody"><div class="toolSectionBg">
-                        <div class="toolTitle"><a href="${h.url_for( controller='admin', action='view_datatypes_registry' )}" target="galaxy_main">View datatypes registry</a></div>
+                        <div class="toolTitle"><a href="${h.url_for( controller='admin', action='view_datatypes_registry' )}" target="galaxy_main">View data types registry</a></div>
+                        <div class="toolTitle"><a href="${h.url_for( controller='admin', action='view_tool_data_tables' )}" target="galaxy_main">View data tables registry</a></div><div class="toolTitle"><a href="${h.url_for( controller='admin', action='tool_versions' )}" target="galaxy_main">View tool lineage</a></div><div class="toolTitle"><a href="${h.url_for( controller='admin', action='reload_tool' )}" target="galaxy_main">Reload a tool's configuration</a></div><div class="toolTitle"><a href="${h.url_for( controller='admin', action='memdump' )}" target="galaxy_main">Profile memory usage</a></div>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
--
This is a commit notification from bitbucket.org. You are receiving
this because you have the service enabled, addressing the recipient of
this email.

    