I would like to use our built-in color-spaces indexes for BWA with
Galaxy but I failed to do it.
I added the following line in the "bwa_index_color.loc" file of the
"tool-data" directory :
hg19 hg19 hg19 my_path_to/hg19.fa
but I don't see the reference hg19 appeared onto the browser... ("Map
with BWA for SOLiD")
Maybe I missed something here because there is a note about the original
path for hg19 for workflow backwards compatibility (?), but I don't
understand what it means..
For the BFAST indexes, It is OK.
Thank you for your help
Bruno Zeitouni, PhD
Institut Curie - U900 INSERM - Mines ParisTech
Bâtiment de Biologie du Développement
26 rue d'ULM
75248 Paris Cedex 05 - FRANCE
Tél : +33 1 56 24 69 31
Mail : bruno.zeitouni(a)curie.fr