Hi,
for some strange gff files i get the following error:
Traceback (most recent call last):
File
"/media/data/web/galaxy-central/lib/galaxy/jobs/runners/local.py", line
149, in run_job
job_wrapper.finish( stdout, stderr, exit_code )
File "/media/data/web/galaxy-central/lib/galaxy/jobs/__init__.py",
line 373, in finish
dataset.datatype.set_meta( dataset, overwrite = False ) #call
datatype.set_meta directly for the initial set_meta call during dataset
creation
File
"/media/data/web/galaxy-central/lib/galaxy/datatypes/interval.py", line
829, in set_meta
if valid_start and valid_end and start < end and strand in
self.valid_gff3_strand and phase in self.valid_gff3_phase:
UnboundLocalError: local variable 'start' referenced before assignment
start and end are not defined when elems[3] and elems[4] are '.'
Attached is a patch that should fix it.
Cheers,
Bjoern