AD Intergration
by John Chen
Hi,
I am trying to integrate AD with Galaxy. My auth_config.xml look like the below, but galaxy won't start with those setting. If anyone has any other sample of a configuration that they don't mind sharing, it be great.
The Python LDAP has been installed, RHEL7 alone with ldap-dev
<auth>
<authenticator>
<type>activedirectory</type>
<options>
<allow-register>False</allow-register>
<auto-register>True</auto-register>
<server><a class="moz-txt-link-freetext" href="ldap://dc1.example.com">ldap://dc1.example.com</server>
<login-use-username>True</login-use-username>
<search-fields>sAMAccountName,mail</search-fields>
<search-base>dc=dc1,dc=example,dc=com</search-base>
<search-filter>(&(objectClass=user)(sAMAccountName={username}))</search-filter>
<search-user>jsmith</search-user>
<search-password>mysecret</search-password>
<bind-user>{sAMAccountName}</bind-user>
<bind-password>{password}</bind-password>
<auto-register-username>{sAMAccountName}</auto-register-username>
<auto-register-email>{mail}</auto-register-email>
</options>
</authenticator>
</auth>
Any suggestion ??
Thanks
2 years, 8 months
GCC2017: Talk schedule posted; Register by 16 June
by Dave Clements
Hello all,
A few GCC2017 <https://gcc2017.sciencesconf.org/> things:
1) The presentation schedule <https://gcc2017.sched.com/> has been posted.
2) The poster and demo schedule will likely be posted later today
3) Lightning talk <https://gcc2017.sciencesconf.org/page/submit> and
birds-of-a-feather
<https://docs.google.com/forms/d/e/1FAIpQLSdRCs97OWt47qmMxWZAtSV3TTLJ24IhW...>
submission are still open
4) There is still limited space available for late poster and computer demo
submissions <https://gcc2017.sciencesconf.org/page/submit>
5) Register by 16 June <https://gcc2017.sciencesconf.org/page/registration>
>From this point on most/all emails about GCC2017 will go only to those that
have registered for it.
The final announcement going out to non-Galaxy mailing lists is below.
Please forward to anyone who you think might be interested.
And, we do hope to see you in Montpellier!
Dave C on behalf of the GCC2017 Organizing Committee
--
2017 Galaxy Community Conference (GCC2017)
26-30 June 2017
Montpellier, France
https://gcc2017.sciencesconf.org/
https://gcc2017.sched.com/
--
The Galaxy Community Conference (GCC) <https://gcc2017.sciencesconf.org/>
brings together researchers working in and supporting data intensive life
science research. There is no better place to share your work and learn
from others that are addressing diverse questions and facing common
challenges in data intensive biology. GCC participants work across the tree
of life, around the world, and represent universities, research
organizations, industry, medical schools and research hospitals.
GCC2017 will be in Montpellier, France, 26-30 June and features two days of
presentations, discussions, poster sessions, lightning talks, computer
demos, keynotes, and birds-of-a-feather meetups
<https://gcc2017.sched.com/overview/type/Conference>, all about
data-intensive biology and the tools that support it. GCC2017 also
features data
and coding hackathons <https://gcc2017.sciencesconf.org/page/hackathon>,
and two days of training <https://gcc2017.sched.com/overview/type/Training>
covering 16 different topics. GCC2017 will be held at Le Corum Conference
Centre <http://www.montpellier-events.com/en/The-Corum/Presentation> in the
heart of Montpellier <https://gcc2017.sciencesconf.org/resource/page/id/2>,
just 10km from the Mediterranean.
Registration closes 16 June
<https://gcc2017.sciencesconf.org/page/registration>. Costs start at 75€
per day for postdocs and students.
If you work in data intensive life science research then GCC2017 is an
ideal opportunity to present your work. Lightning talk
<https://gcc2017.sciencesconf.org/page/submit> and birds-of-a-feather
<https://docs.google.com/forms/d/e/1FAIpQLSdRCs97OWt47qmMxWZAtSV3TTLJ24IhW...>
submission are still open, and there is limited space available for late
poster and computer demo submissions
<https://gcc2017.sciencesconf.org/page/submit>.
About Galaxy
Galaxy <https://galaxyproject.org/> is an open, web-based platform for
data-intensive biomedical analysis used by tens of thousands of researchers
around the world. It supports ad hoc exploration and analysis through
scalable and repeatable data analysis pipelines for large research studies.
Galaxy is available in over 90 free and publicly accessible web servers, on
public and national cloud infrastructures, and is locally installed at
hundreds, if not thousands, of research organisations around the world.
We hope to see you in Montpellier!
Au revoir,
The GCC2017 Organising Committee
--
https://galaxyproject.org/
https://getgalaxy.org/
https://usegalaxy.org/
https://gcc2017.sciencesconf.org/
2 years, 8 months
composite datatypes: uploading and optional files
by Peter van Heusden
Hi there
We've got a composite datatype (neostore) for Neo4j databases. Currently
the upload is disabled because to upload you need to select each individual
file of the database directory (which is tedious). Is there a more
efficient way to upload composite datatypes? E.g. as a tar.gz or zip file?
If not, has anyone looked into supporting this? (I see @jmchilton was noted
as working on a composite uploading for 17.05)
Secondly, we're moving to support Neo4j 3.2.0. In this version there is a
minor (1 file) change in the files used to store the database. Can
composite datatypes have "optional files"?
Thanks,
Peter
2 years, 8 months
galaxy & DFARS
by Eric Rasche
Has anyone dealt with DFARS requirements and data in Galaxy?
Similar themes across other requirement sets might be: encryption of
data at rest, DoD 32-pass secure deletion of data, providing access logs
for datasets/histories/intermediate steps, providing logs of changes to
access control policies for histories/datasets.
Just wondering before we come under these regs and need to be doing all
of this.
Cheers,
Eric
2 years, 8 months
bwa_mem and "-t" option
by David Kovalic
Hi,
Is it possible, and if so how, to run the galaxy devteam (version546ada4a9f43)
of bwa_mem with the "-t" option and a value >1?
"-t INT number of threads [1]"
This would be quite useful, and used, for accelerating single bwa mem jobs.
Thanks,
David
2 years, 8 months
