Hi all,
does anyone encountered a long start-up delay with the recent next-stable and starting a instance from scratch?
For me its hanging at:
tool_shed.galaxy_install.migrate.check DEBUG 2014-08-05 18:39:45,207 psycopg2 egg successfully loaded for postgres dialect
for 3-5 minutes.
Cheers, Bjoern
I’ve noticed that startup is very slow.
It’s about 15 minutes for me to stop and restart my 4 daemons. It was much faster with galaxy on local storage.
brad -- Bradley W. Langhorst, Ph.D. Applications and Product Development Scientist
On Aug 5, 2014, at 2:41 PM, Björn Grüning <bjoern.gruening@gmail.commailto:bjoern.gruening@gmail.com> wrote:
Hi all,
does anyone encountered a long start-up delay with the recent next-stable and starting a instance from scratch?
For me its hanging at:
tool_shed.galaxy_install.migrate.check DEBUG 2014-08-05 18:39:45,207 psycopg2 egg successfully loaded for postgres dialect
for 3-5 minutes.
Cheers, Bjoern ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
I just freshly cloned galaxy-central, switched to next-stable and did initial startup - no problems detected and Galaxy booted in under 2m.
On Tue, Aug 5, 2014 at 2:54 PM, Langhorst, Brad Langhorst@neb.com wrote:
I’ve noticed that startup is very slow.
It’s about 15 minutes for me to stop and restart my 4 daemons. It was much faster with galaxy on local storage.
brad
Bradley W. Langhorst, Ph.D. Applications and Product Development Scientist
On Aug 5, 2014, at 2:41 PM, Björn Grüning bjoern.gruening@gmail.com wrote:
Hi all,
does anyone encountered a long start-up delay with the recent next-stable and starting a instance from scratch?
For me its hanging at:
tool_shed.galaxy_install.migrate.check DEBUG 2014-08-05 18:39:45,207 psycopg2 egg successfully loaded for postgres dialect
for 3-5 minutes.
Cheers, Bjoern ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
There's definitely a request that will occasionally block at startup -- I've hit this before too, Martin. Looking into it now.
On Tue, Aug 5, 2014 at 2:59 PM, Martin Čech marten@bx.psu.edu wrote:
I just freshly cloned galaxy-central, switched to next-stable and did initial startup - no problems detected and Galaxy booted in under 2m.
On Tue, Aug 5, 2014 at 2:54 PM, Langhorst, Brad Langhorst@neb.com wrote:
I’ve noticed that startup is very slow.
It’s about 15 minutes for me to stop and restart my 4 daemons. It was much faster with galaxy on local storage.
brad
Bradley W. Langhorst, Ph.D. Applications and Product Development Scientist
On Aug 5, 2014, at 2:41 PM, Björn Grüning bjoern.gruening@gmail.com wrote:
Hi all,
does anyone encountered a long start-up delay with the recent next-stable and starting a instance from scratch?
For me its hanging at:
tool_shed.galaxy_install.migrate.check DEBUG 2014-08-05 18:39:45,207 psycopg2 egg successfully loaded for postgres dialect
for 3-5 minutes.
Cheers, Bjoern ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
I had a similar issue a while ago. Greg mentioned the following setting in universe:
# Enable use of an in-memory registry with bi-directional relationships # between repositories (i.e., in addition to lists of dependencies for a # repository, keep an in-memory registry of dependent items for each repository. #manage_dependency_relationships = True
Setting this to false made the delay go away. I haven't had issues so far after disabling.
See here for details: http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-March/018821.html
Best,
Geert
On 08/05/2014 09:01 PM, Dannon Baker wrote:
There's definitely a request that will occasionally block at startup -- I've hit this before too, Martin. Looking into it now.
On Tue, Aug 5, 2014 at 2:59 PM, Martin Čech <marten@bx.psu.edu mailto:marten@bx.psu.edu> wrote:
I just freshly cloned galaxy-central, switched to next-stable and did initial startup - no problems detected and Galaxy booted in under 2m. On Tue, Aug 5, 2014 at 2:54 PM, Langhorst, Brad <Langhorst@neb.com <mailto:Langhorst@neb.com>> wrote: I’ve noticed that startup is very slow. It’s about 15 minutes for me to stop and restart my 4 daemons. It was much faster with galaxy on local storage. brad -- Bradley W. Langhorst, Ph.D. Applications and Product Development Scientist On Aug 5, 2014, at 2:41 PM, Björn Grüning <bjoern.gruening@gmail.com <mailto:bjoern.gruening@gmail.com>> wrote:
Hi all, does anyone encountered a long start-up delay with the recent next-stable and starting a instance from scratch? For me its hanging at: tool_shed.galaxy_install.migrate.check DEBUG 2014-08-05 18:39:45,207 psycopg2 egg successfully loaded for postgres dialect for 3-5 minutes. Cheers, Bjoern ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
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