galaxy-commits

galaxy-commits@lists.galaxyproject.org
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commit/galaxy-central: dan: Fix for maf_utilities.build_maf_index_species_chromosomes() return values when a bad MAF is provided.
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11 years, 2 months
commit/galaxy-central: greg: Replace the online form approach to adding new entries into the tool_data_table_conf.xml file by requiring a tool shed user to upload a tool_data_table_conf.xml.sample file that includes all entries required by tools in the repository. Steamline the local Galaxy tool install process for tools that include dynamically generated select lists so that all of this occurs behind the scene.
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11 years, 2 months
commit/galaxy-central: greg: Add 2 new attributes to dynamically generated select lists; "missing_tool_data_table_name" will include a value (e.g., tmap_indexes) if the select list requires a missing entry in the tool_data_table_conf.xml file, and "missing_index_file" will include a value (e.g., tmap_indexes.loc) if the select list requires a missing index file. Tools that used to not load in index files were missing will now load, although they will not properly execute. Work remaining is
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11 years, 2 months
commit/galaxy-central: dan: MAF stats tool will now skip intervals with length less 1.
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11 years, 2 months
commit/galaxy-central: natefoo: This is what I get for making one "inconsequential" change after running the tests. =/
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11 years, 2 months
commit/galaxy-central: natefoo: Abstraction for web methods, implemented for the Quota operations and the
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11 years, 2 months
commit/galaxy-central: jgoecks: Improvements for dataset display on saved histories page: (1) performance improvements using a single query rather than iteration; and (2) do not count hidden datasets.
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11 years, 2 months
commit/galaxy-central: dannon: Fix use_tasked_jobs to inherit the parent job's user.
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11 years, 2 months
commit/galaxy-central: richard_burhans: aaChanges tool: Added an option to keep the columns from the SNP dataset
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11 years, 2 months
commit/galaxy-central: jgoecks: Read and write summary tree in binary; this mitigates problems in reading summary tree file on some platforms.
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11 years, 2 months
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