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commit/galaxy-central: guerler: ToolForm: Hide current version from version selector
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/01a3ff6a376c/
Changeset: 01a3ff6a376c
User: guerler
Date: 2014-12-10 16:42:34+00:00
Summary: ToolForm: Hide current version from version selector
Affected #: 3 files
diff -r 4f46caf59f6c6a8a5dd03a425cc2656f91198fe1 -r 01a3ff6a376c4b95ca540bc120b5aab47920fd39 client/galaxy/scripts/mvc/tools/tools-form.js
--- a/client/galaxy/scripts/mvc/tools/tools-form.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form.js
@@ -342,20 +342,23 @@
});
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
- versions_button.addMenu({
- title : 'Switch to ' + options.versions[i],
- version : options.versions[i],
- icon : 'fa-cube',
- onclick : function() {
- // here we update the tool version (some tools encode the version also in the id)
- options.id = options.id.replace(options.version, this.version);
- options.version = this.version;
-
- // rebuild the model and form
- self.deferred.reset();
- self.deferred.execute(function(){self._buildModel()});
- }
- });
+ var version = options.versions[i];
+ if (version != options.version) {
+ versions_button.addMenu({
+ title : 'Switch to ' + version,
+ version : version,
+ icon : 'fa-cube',
+ onclick : function() {
+ // here we update the tool version (some tools encode the version also in the id)
+ options.id = options.id.replace(options.version, this.version);
+ options.version = this.version;
+
+ // rebuild the model and form
+ self.deferred.reset();
+ self.deferred.execute(function(){self._buildModel()});
+ }
+ });
+ }
}
} else {
versions_button.$el.hide();
diff -r 4f46caf59f6c6a8a5dd03a425cc2656f91198fe1 -r 01a3ff6a376c4b95ca540bc120b5aab47920fd39 static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -342,20 +342,23 @@
});
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
- versions_button.addMenu({
- title : 'Switch to ' + options.versions[i],
- version : options.versions[i],
- icon : 'fa-cube',
- onclick : function() {
- // here we update the tool version (some tools encode the version also in the id)
- options.id = options.id.replace(options.version, this.version);
- options.version = this.version;
-
- // rebuild the model and form
- self.deferred.reset();
- self.deferred.execute(function(){self._buildModel()});
- }
- });
+ var version = options.versions[i];
+ if (version != options.version) {
+ versions_button.addMenu({
+ title : 'Switch to ' + version,
+ version : version,
+ icon : 'fa-cube',
+ onclick : function() {
+ // here we update the tool version (some tools encode the version also in the id)
+ options.id = options.id.replace(options.version, this.version);
+ options.version = this.version;
+
+ // rebuild the model and form
+ self.deferred.reset();
+ self.deferred.execute(function(){self._buildModel()});
+ }
+ });
+ }
}
} else {
versions_button.$el.hide();
diff -r 4f46caf59f6c6a8a5dd03a425cc2656f91198fe1 -r 01a3ff6a376c4b95ca540bc120b5aab47920fd39 static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:"Switch to "+x.versions[r],version:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.version);x.version=this.version;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",title:"Options",tooltip:"View available options"});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var x=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var y=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in y.requirements){var w=y.requirements[r];n+=w.name;if(w.version){n+=" (Version "+w.version+")"}if(r<y.requirements.length-2){n+=", "}if(r==y.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;x.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;x.message.update({message:""})}}});if(!y.requirements||y.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(y.versions&&y.versions.length>1){for(var r in y.versions){var u=y.versions[r];if(u!=y.version){p.addMenu({title:"Switch to "+u,version:u,icon:"fa-cube",onclick:function(){y.id=y.id.replace(y.version,this.version);y.version=this.version;x.deferred.reset();x.deferred.execute(function(){x._buildModel()})}})}}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",title:"Options",tooltip:"View available options"});if(y.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(y.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(y.biostar_url+"/t/"+y.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+y.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+y.id+"/download"}})}this.section=new l.View(x,{inputs:y.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+y.name+"</b> "+y.description+" (Version "+y.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+y.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){x.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(y.help!=""){this.$el.append(d.help(y.help))}if(y.citations){var v=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=y.id;var q=new a.CitationListView({el:v,collection:o});q.render();o.fetch();this.$el.append(v)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(y.message){this.message.update({persistent:true,status:"warning",message:y.message})}}});return{View:b}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
--
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1
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commit/galaxy-central: guerler: ToolForm: Activate tool form
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/4f46caf59f6c/
Changeset: 4f46caf59f6c
User: guerler
Date: 2014-12-10 16:02:50+00:00
Summary: ToolForm: Activate tool form
Affected #: 1 file
diff -r eca8b8ed910366a2f72b778ace674e3126832e66 -r 4f46caf59f6c6a8a5dd03a425cc2656f91198fe1 templates/webapps/galaxy/tool_form.mako
--- a/templates/webapps/galaxy/tool_form.mako
+++ b/templates/webapps/galaxy/tool_form.mako
@@ -4,7 +4,7 @@
${h.css('base', 'jquery-ui/smoothness/jquery-ui')}
## skip new tool form code if disabled
-%if trans.app.config.get('toolform_upgrade', False):
+##%if trans.app.config.get('toolform_upgrade', False):
<%
## TEMPORARY: create tool dictionary in mako while both tool forms are in use.
## This avoids making two separate requests since the classic form requires the mako anyway.
@@ -28,9 +28,9 @@
});
</script><div id="tool-form-classic" style="display: none;">
-%else:
- <div id="tool-form-classic">
-%endif
+##%else:
+## <div id="tool-form-classic">
+##%endif
<%namespace file="/message.mako" import="render_msg" /><%namespace file="/base_panels.mako" import="overlay" />
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Ui: Minor style fix, Charts: Repack scripts
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/eca8b8ed9103/
Changeset: eca8b8ed9103
User: guerler
Date: 2014-12-10 15:51:37+00:00
Summary: Ui: Minor style fix, Charts: Repack scripts
Affected #: 3 files
diff -r a8aa8c67fe5335df93e3195bb46beb62783325bd -r eca8b8ed910366a2f72b778ace674e3126832e66 config/plugins/visualizations/charts/static/build-app.js
--- a/config/plugins/visualizations/charts/static/build-app.js
+++ b/config/plugins/visualizations/charts/static/build-app.js
@@ -3,4 +3,4 @@
// (c) 2009-2013 Jeremy Ashkenas, DocumentCloud Inc.
// Underscore may be freely distributed under the MIT license.
-define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var 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t=Backbone.View.extend({visible:!1,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find("#content"),this.$title=this.$el.find("#portlet-title-text");var n=this.$el.find("#portlet-content");this.options.scrollable?n.addClass("scroll"):this.options.title?n.addClass("no-scroll"):n.addClass("no-scroll-no-title"),this.options.nopadding&&(n.css("padding","0px"),this.$content.css("padding","0px")),this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var r=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),r.$buttons.append(t.$el)})}else this.$buttons.remove();this.$operations=$(this.el).find("#operations");if(this.options.operations){var r=this;$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$operations.append(t.$el)})}this.options.body&&this.append(this.options.body)},append:function(t){this.$content.append(e.wrap(t))},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},_template:function(e){var t='<div id="'+e.id+'" class="'+e.cls+'">';return e.title&&(t+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: '+e.operations_flt+';"></div>'+'<div class="portlet-title">',e.icon&&(t+='<i class="icon fa '+e.icon+'"> </i>'),t+='<span id="portlet-title-text" class="portlet-title-text">'+e.title+"</span>"+"</div>"+"</div>"),t+='<div id="portlet-content" class="portlet-content">',e.placement=="top"&&(t+='<div id="buttons" class="buttons"></div>'),t+='<div id="content" class="content"></div>',e.placement=="bottom"&&(t+='<div id="buttons" class="buttons"></div>'),t+="</div></div>",t}});return{View:t}}),define("mvc/ui/ui-select-default",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:"",cls:"",empty:"No data available",visible:!0,wait:!1,multiple:!1,searchable:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$select=this.$el.find(".select"),this.$icon=this.$el.find(".icon"),this.$button=this.$el.find(".button"),this.options.multiple?(this.$select.prop("multiple",!0),this.$select.addClass("ui-select-multiple"),this.$icon.remove()):this.$el.addClass("ui-select"),this.update(this.options.data),this.options.visible||this.hide(),this.options.wait?this.wait():this.show();var n=this;this.$select.on("change",function(){n._change()}),this.on("change",function(){n._change()})},value:function(e){return e!==undefined&&this.$select.val(e),this.$select.val()},first:function(){var e=this.$select.find("option");return e.length>0?e.val():undefined},validate:function(){var e=this.value();e instanceof Array||(e=[e]);for(var t in e)if([null,"null",undefined].indexOf(e[t])>-1)return!1;return!0},text:function(){return this.$select.find("option:selected").text()},show:function(){this.unwait(),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-spinner fa-spin")},unwait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-caret-down")},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},add:function(e){this.$select.append(this._templateOption(e)),this._refresh()},del:function(e){this.$select.find("option[value="+e+"]").remove(),this.$select.trigger("change"),this._refresh()},update:function(e){var t=this.$select.val();this.$select.find("option").remove();for(var n in e)this.$select.append(this._templateOption(e[n]));this._refresh(),this.$select.val(t),this.$select.val()||this.$select.val(this.first()),this.options.searchable&&(this.$button.hide(),this.$select.select2("destroy"),this.$select.select2())},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find('option[value="'+e+'"]').length>0},_change:function(){this.options.onchange&&this.options.onchange(this.$select.val())},_refresh:function(){this.$select.find("option[value=null]").remove();var e=this.$select.find("option").length;e==0?(this.disable(),this.$select.append(this._templateOption({value:"null",label:this.options.empty}))):this.enable()},_templateOption:function(e){return'<option value="'+e.value+'">'+e.label+"</option>"},_template:function(e){return'<div id="'+e.id+'">'+'<select id="select" class="select '+e.cls+" "+e.id+'"></select>'+'<div class="button">'+'<i class="icon"/>'+"</div>"+"</div>"}});return{View:t}}),define("mvc/ui/ui-slider",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{value:"",min:null,max:null,step:null,precise:!1,split:1e4},initialize:function(t){var n=this;this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.useslider=this.options.max!==null&&this.options.min!==null&&this.options.max>this.options.min,this.options.step===null&&(this.options.step=1,this.options.precise&&this.useslider&&(this.options.step=(this.options.max-this.options.min)/this.options.split)),this.useslider?(this.$slider=this.$el.find("#slider"),this.$slider.slider(this.options),this.$slider.on("slide",function(e,t){n.value(t.value)})):this.$el.find(".ui-form-slider-text").css("width","100%"),this.$text=this.$el.find("#text"),this.$text.on("change",function(){n.value($(this).val())});var r=[];this.$text.on("keyup",function(e){r[e.which]=!1}),this.$text.on("keydown",function(e){var t=e.which;r[t]=!0,t==8||t==9||t==13||t==37||t==39||t>=48&&t<=57||t==190&&$(this).val().indexOf(".")==-1&&n.options.precise||t==189&&$(this).val().indexOf("-")==-1||r[91]||r[17]||event.preventDefault()})},value:function(e){return e!==undefined&&(isNaN(e)&&(e=0),this.options.max!==null&&(e=Math.min(e,this.options.max)),this.options.min!==null&&(e=Math.max(e,this.options.min)),this.options.onchange&&this.options.onchange(e),this.$slider&&this.$slider.slider("value",e),this.$text.val(e)),this.$text.val()},_template:function(e){return'<div id="'+e.id+'" class="ui-form-slider">'+'<input id="text" type="text" class="ui-form-slider-text"/>'+'<div id="slider" class="ui-form-slider-element"/>'+"</div>"}});return{View:t}}),define("mvc/ui/ui-options",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){this.optionsDefault={value:[],visible:!0,data:[],id:e.uuid(),errorText:"No data available.",waitText:"Please wait..."},this.options=e.merge(t,this.optionsDefault),this.setElement("<div/>"),this.$message=$("<div/>"),this.$options=$(this._template(t)),this.$el.append(this.$message),this.$el.append(this.$options),this.options.visible||this.$el.hide(),this.update(this.options.data),this.options.value&&this.value(this.options.value);var n=this;this.on("change",function(){n._change()})},update:function(e){var t=this._getValue();this.$el.find(".ui-option").remove();for(var n in e){var r=$(this._templateOption(e[n]));r.addClass("ui-option"),this.$options.append(r)}var i=this;this.$el.find("input").on("change",function(){i.value(i._getValue()),i._change()}),this._refresh(),this.value(t)},exists:function(e){typeof e=="string"&&(e=[e]);for(var t in e)if(this.$el.find('input[value="'+e[t]+'"]').length>0)return!0;return!1},first:function(){var e=this.$el.find("input");return e.length>0?e.val():undefined},validate:function(){var e=this.value();e instanceof Array||(e=[e]);for(var t in e)if([null,"null",undefined].indexOf(e[t])>-1)return!1;return!0},wait:function(){this._size()==0&&(this._messageShow(this.options.waitText,"info"),this.$options.hide())},unwait:function(){this._messageHide(),this._refresh()},_change:function(){this.options.onchange&&this.options.onchange(this._getValue())},_refresh:function(){this._size()==0?(this._messageShow(this.options.errorText,"danger"),this.$options.hide()):(this._messageHide(),this.$options.css("display","inline-block"))},_getValue:function(){var e=this.$el.find(":checked");if(e.length==0)return"null";if(this.options.multiple){var t=[];return e.each(function(){t.push($(this).val())}),t}return e.val()},_size:function(){return this.$el.find(".ui-option").length},_messageShow:function(e,t){this.$message.show(),this.$message.removeClass(),this.$message.addClass("ui-message alert alert-"+t),this.$message.html(e)},_messageHide:function(){this.$message.hide()}}),n={};n.View=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},value:function(e){typeof e=="string"&&(e=[e]);if(e!==undefined){this.$el.find("input").prop("checked",!1);for(var t in e)this.$el.find('input[value="'+e[t]+'"]').prop("checked",!0)}return this._getValue()},_templateOption:function(e){return'<div><input type="radio" name="'+this.options.id+'" value="'+e.value+'"/>'+e.label+"<br>"+"</div>"},_template:function(){return'<div class="ui-options"/>'}});var r={};r.View=n.View.extend({initialize:function(e){e.multiple=!0,n.View.prototype.initialize.call(this,e)},_templateOption:function(e){return'<div><input type="checkbox" name="'+this.options.id+'" value="'+e.value+'"/>'+e.label+"<br>"+"</div>"}});var i={};return i.View=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},value:function(e){return e!==undefined&&(this.$el.find("input").prop("checked",!1),this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t='<label class="btn btn-default">';return e.icon&&(t+='<i class="fa '+e.icon+'"/>'),t+='<input type="radio" name="'+this.options.id+'" value="'+e.value+'">'+e.label+"</label>",t},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}}),{Radio:n,RadioButton:i,Checkbox:r}}),define("mvc/ui/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"",floating:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a class="dropdown-item" href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'">'+'<div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'">'+'<i class="icon fa '+e.icon+'"/>';return e.title&&(r+=' <span class="title">'+e.title+"</span>"),r+="</div></div>",r}})}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r,i,s){var o=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),u=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"},value:function(){return options.title}}),a=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/> '+e.title+"</div>"}}),f=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),l=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),c=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),h=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>")},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn();if(!t.persistent){var n=this;window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="ui-message alert alert-'+e.status+'"/>'}}),p=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),d=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),v=Backbone.View.extend({optionsDefault:{value:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<hidden id="'+e.id+'" value="'+e.value+'"/>'}});return{Anchor:c,Button:f,ButtonIcon:l,ButtonMenu:i,Icon:a,Image:o,Input:d,Label:u,Message:h,Modal:s,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:p,Select:t,Hidden:v,Slider:n}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){if(this.queue.length>0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var r=this;this.chart.on("redraw",function(){r._draw(r.chart)}),this.chart.on("set:state",function(){var e=r.$el.find("#info"),t=r.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(r.chart.get("state_info"));var i=r.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=this.app.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){this.app.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null,max:null,onchange:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.current_id=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},size:function(){return _.size(this.list)},current:function(){return this.$el.find(".tab-pane.active").attr("id")},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),this.size()==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n),this.options.max&&this.size()>=this.options.max&&this.$el.find("#new-tab").hide();if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)}),this.current_id||(this.current_id=n)},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab),this.list[e]&&delete this.list[e],this.size()<this.options.max&&this.$el.find("#new-tab").show()},delRemovable:function(){for(var e in this.list)this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find("#tab-"+this.current_id).removeClass("active"),this.$el.find("#"+this.current_id).removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#"+e).addClass("active"),this.current_id=e),this.options.onchange&&this.options.onchange(e)},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},retitle:function(e){var t=0;for(var n in this.list)this.title(n,++t+": "+e)},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'" class="tab-title-text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("mvc/ui/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",cls_tr:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=this._row()},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e,t){this._commit(e,t,!1)},prepend:function(e,t){this._commit(e,t,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t,n){this.del(e),this.row.attr("id",e),n?this.$tbody.prepend(this.row):this.$tbody.append(this.row),t&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return $('<tr class="'+this.options.cls_tr+'"></tr>')},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="'+e.cls+'">'+"<thead></thead>"+"<tbody></tbody>"+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div class="ui-table-form-info">'+n.info+"</div>"),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add('<span class="ui-table-form-title">'+n.title+"</span>","25%"),this.table.add(u))}else this.table.add('<div class="ui-table-form-separator">'+n.title+":<div/>"),this.table.add($("<div/>"));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["mvc/ui/ui-misc","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{title:"Configuration",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","mvc/ui/ui-misc"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('<div class="charts-grid"/>');s.append(e.wrap((new t.Label({title:"How many data points would you like to analyze?"})).$el)),this.library=new t.RadioButton.View({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(e.wrap(this.library.$el)),this.setElement(s),this._render(),this.library.value("small"),this.library.trigger("change")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var e=0,t=this.app.types.attributes;for(var n in t){var r=t[n],i=r.category;this.categories[i]||(this.categories[i]={},this.categories_index[i]=e++),this.categories[i][n]=r}for(var i in this.categories){var s=$('<div style="clear: both;"/>');s.append(this._template_header({id:"types-header-"+this.categories_index[i],title:i}));for(var n in this.categories[i]){var r=this.categories[i][n],o=r.title+" ("+r.library+")";r.zoomable&&(o='<span class="fa fa-search-plus"/>'+o),s.append(this._template_item({id:n,title:o,url:config.app_root+"charts/"+this.app.chartPath(n)+"/logo.png"}))}this.$el.append(s)}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'<div id="'+e.id+'" class="header">'+"• "+e.title+"<div>"},_template_item:function(e){return'<div id="'+e.id+'" class="item">'+'<img class="image" src="'+e.url+'">'+'<div class="title">'+e.title+"</div>"+"<div>"}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","mvc/ui/ui-misc","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({initialize:function(i,s){var o=this;this.app=i,this.chart=this.app.chart,this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){o.chart.set("title",o.title.value())}});var f=$("<div/>");f.append(r.wrap((new t.Label({title:"Provide a chart title:"})).$el)),f.append(r.wrap(this.title.$el)),f.append(r.wrap(this.types.$el)),this.tabs.add({id:"main",title:"Start",$el:f}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.app.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e4,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{title:"Use multi-panels",info:"Would you like to separate your data into individual panels?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),function(){function t(e,t){return(new Date(t,e+1,0)).getDate()}function n(e,t,n){return function(r,i,s){var o=e(r),u=[];o<r&&t(o);if(s>1)while(o<i){var a=new Date(+o);n(a)%s===0&&u.push(a),t(o)}else while(o<i)u.push(new Date(+o)),t(o);return u}}var e=window.nv||{};e.version="1.1.15b",e.dev=!0,window.nv=e,e.tooltip=e.tooltip||{},e.utils=e.utils||{},e.models=e.models||{},e.charts={},e.graphs=[],e.logs={},e.dispatch=d3.dispatch("render_start","render_end"),e.dev&&(e.dispatch.on("render_start",function(t){e.logs.startTime=+(new Date)}),e.dispatch.on("render_end",function(t){e.logs.endTime=+(new 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E=d3.select(this),T=this,N=(u||parseInt(E.style("width"))||960)-s.left-s.right,C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom;x.update=function(){E.call(x)},x.container=this,g.disabled=d.map(function(e){return!!e.disabled});if(!y){var k;y={};for(k in g)g[k]instanceof Array?y[k]=g[k].slice(0):y[k]=g[k]}if(!d||!d.length||!d.filter(function(e){return e.values.length}).length){var L=E.selectAll(".nv-noData").data([b]);return L.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),L.attr("x",s.left+N/2).attr("y",s.top+C/2).text(function(e){return e}),x}E.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale();var A=E.selectAll("g.nv-wrap.nv-historicalBarChart").data([d]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBarChart").append("g"),M=A.select("g");O.append("g").attr("class","nv-x nv-axis"),O.append("g").attr("class","nv-y 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t=e.models.historicalBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s={top:30,right:90,bottom:50,left:90},o=e.utils.defaultColor(),u=null,a=null,f=!1,l=!0,c=!0,h=!1,p=!0,d=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},v,m,g={},y=null,b="No Data Available.",w=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),E=0;n.orient("bottom").tickPadding(7),r.orient(h?"right":"left");var S=function(i,s){if(s){var o=d3.select(s).select("svg"),u=o.node()?o.attr("viewBox"):null;if(u){u=u.split(" ");var a=parseInt(o.style("width"))/u[2];i.pos[0]=i.pos[0]*a,i.pos[1]=i.pos[1]*a}}var f=i.pos[0]+(s.offsetLeft||0),l=i.pos[1]+(s.offsetTop||0),c=n.tickFormat()(t.x()(i.point,i.pointIndex)),h=r.tickFormat()(t.y()(i.point,i.pointIndex)),p=d(i.series.key,c,h,i,x);e.tooltip.show([f,l],p,null,null,s)};return 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t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),n.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),n.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){d&&e.tooltip.cleanup()}),T.dispatch=S,T.legend=o,T.lines=t,T.bars=n,T.xAxis=r,T.y1Axis=i,T.y2Axis=s,d3.rebind(T,t,"defined","size","clipVoronoi","interpolate"),T.options=e.utils.optionsFunc.bind(T),T.x=function(e){return arguments.length?(l=e,t.x(e),n.x(e),T):l},T.y=function(e){return arguments.length?(c=e,t.y(e),n.y(e),T):c},T.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,T):u},T.width=function(e){return 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e=k.transitionDuration();k.transitionDuration(0),z(),k.transitionDuration(e)}),w&&a.extent(w);var F=P.select(".nv-brushBackground").selectAll("g").data([w||a.extent()]),I=F.enter().append("g");I.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",O),I.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",O);var q=P.select(".nv-x.nv-brush").call(a);q.selectAll("rect").attr("height",O),q.selectAll(".resize").append("path").attr("d",R),z(),s.scale(g).ticks(L/100).tickSize(-O,0),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),d3.transition(P.select(".nv-context .nv-x.nv-axis")).call(s),o.scale(y).ticks(O/36).tickSize(-L,0),d3.transition(P.select(".nv-context .nv-y.nv-axis")).call(o),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),u.dispatch.on("stateChange",function(e){k.update()}),T.on("tooltipShow",function(e){E&&C(e,N.parentNode)})}),k}var t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return 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t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return 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arguments.length?(m=e,F):m},F.showDistY=function(e){return arguments.length?(g=e,F):g},F.showControls=function(e){return arguments.length?(S=e,F):S},F.showLegend=function(e){return arguments.length?(y=e,F):y},F.showXAxis=function(e){return arguments.length?(b=e,F):b},F.showYAxis=function(e){return arguments.length?(w=e,F):w},F.rightAlignYAxis=function(e){return arguments.length?(E=e,r.orient(e?"right":"left"),F):E},F.fisheye=function(e){return arguments.length?(x=e,F):x},F.xPadding=function(e){return arguments.length?(d=e,F):d},F.yPadding=function(e){return arguments.length?(v=e,F):v},F.tooltips=function(e){return arguments.length?(N=e,F):N},F.tooltipContent=function(e){return arguments.length?(L=e,F):L},F.tooltipXContent=function(e){return arguments.length?(C=e,F):C},F.tooltipYContent=function(e){return arguments.length?(k=e,F):k},F.state=function(e){return arguments.length?(A=e,F):A},F.defaultState=function(e){return arguments.length?(O=e,F):O},F.noData=function(e){return 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t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=!1,v=!1,m=!0,g=!0,y=!0,b=!1,w=!!d3.fisheye,E=0,S=!1,x=!0,T=function(e,t,n){return"<strong>"+t+"</strong>"},N=function(e,t,n){return"<strong>"+n+"</strong>"},C=function(e,t,n,r){return"<h3>"+e+"</h3>"+"<p>"+r+"</p>"},k={},L=null,A=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),O="No Data Available.",M=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(b?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var _,D,P=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" 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arguments.length?(M=e,B):M},B},e.models.sparkline=function(){function d(e){return e.each(function(e){var i=n-t.left-t.right,d=r-t.top-t.bottom,v=d3.select(this);s.domain(l||d3.extent(e,u)).range(h||[0,i]),o.domain(c||d3.extent(e,a)).range(p||[d,0]);var m=v.selectAll("g.nv-wrap.nv-sparkline").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-sparkline"),b=g.append("g"),w=m.select("g");m.attr("transform","translate("+t.left+","+t.top+")");var E=m.selectAll("path").data(function(e){return[e]});E.enter().append("path"),E.exit().remove(),E.style("stroke",function(e,t){return e.color||f(e,t)}).attr("d",d3.svg.line().x(function(e,t){return s(u(e,t))}).y(function(e,t){return o(a(e,t))}));var S=m.selectAll("circle.nv-point").data(function(e){function n(t){if(t!=-1){var n=e[t];return n.pointIndex=t,n}return null}var t=e.map(function(e,t){return a(e,t)}),r=n(t.lastIndexOf(o.domain()[1])),i=n(t.indexOf(o.domain()[0])),s=n(t.length-1);return[i,r,s].filter(function(e){return e!=null})});S.enter().append("circle"),S.exit().remove(),S.attr("cx",function(e,t){return s(u(e,e.pointIndex))}).attr("cy",function(e,t){return o(a(e,e.pointIndex))}).attr("r",2).attr("class",function(e,t){return u(e,e.pointIndex)==s.domain()[1]?"nv-point nv-currentValue":a(e,e.pointIndex)==o.domain()[0]?"nv-point nv-minValue":"nv-point nv-maxValue"})}),d}var t={top:2,right:0,bottom:2,left:0},n=400,r=32,i=!0,s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=e.utils.getColor(["#000"]),l,c,h,p;return d.options=e.utils.optionsFunc.bind(d),d.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,d):t},d.width=function(e){return arguments.length?(n=e,d):n},d.height=function(e){return arguments.length?(r=e,d):r},d.x=function(e){return arguments.length?(u=d3.functor(e),d):u},d.y=function(e){return arguments.length?(a=d3.functor(e),d):a},d.xScale=function(e){return arguments.length?(s=e,d):s},d.yScale=function(e){return arguments.length?(o=e,d):o},d.xDomain=function(e){return arguments.length?(l=e,d):l},d.yDomain=function(e){return arguments.length?(c=e,d):c},d.xRange=function(e){return arguments.length?(h=e,d):h},d.yRange=function(e){return arguments.length?(p=e,d):p},d.animate=function(e){return arguments.length?(i=e,d):i},d.color=function(t){return arguments.length?(f=e.utils.getColor(t),d):f},d},e.models.sparklinePlus=function(){function v(e){return e.each(function(c){function O(){if(a)return;var e=C.selectAll(".nv-hoverValue").data(u),r=e.enter().append("g").attr("class","nv-hoverValue").style("stroke-opacity",0).style("fill-opacity",0);e.exit().style("stroke-opacity",0).style("fill-opacity",0).remove(),e.attr("transform",function(e){return"translate("+s(t.x()(c[e],e))+",0)"}).style("stroke-opacity",1).style("fill-opacity",1);if(!u.length)return;r.append("line").attr("x1",0).attr("y1",-n.top).attr("x2",0).attr("y2",b),r.append("text").attr("class","nv-xValue").attr("x",-6).attr("y",-n.top).attr("text-anchor","end").attr("dy",".9em"),C.select(".nv-hoverValue .nv-xValue").text(f(t.x()(c[u[0]],u[0]))),r.append("text").attr("class","nv-yValue").attr("x",6).attr("y",-n.top).attr("text-anchor","start").attr("dy",".9em"),C.select(".nv-hoverValue .nv-yValue").text(l(t.y()(c[u[0]],u[0])))}function M(){function r(e,n){var r=Math.abs(t.x()(e[0],0)-n),i=0;for(var s=0;s<e.length;s++)Math.abs(t.x()(e[s],s)-n)<r&&(r=Math.abs(t.x()(e[s],s)-n),i=s);return i}if(a)return;var e=d3.mouse(this)[0]-n.left;u=[r(c,Math.round(s.invert(e)))],O()}var m=d3.select(this),g=(r||parseInt(m.style("width"))||960)-n.left-n.right,b=(i||parseInt(m.style("height"))||400)-n.top-n.bottom;v.update=function(){v(e)},v.container=this;if(!c||!c.length){var w=m.selectAll(".nv-noData").data([d]);return w.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),w.attr("x",n.left+g/2).attr("y",n.top+b/2).text(function(e){return e}),v}m.selectAll(".nv-noData").remove();var E=t.y()(c[c.length-1],c.length-1);s=t.xScale(),o=t.yScale();var S=m.selectAll("g.nv-wrap.nv-sparklineplus").data([c]),T=S.enter().append("g").attr("class","nvd3 nv-wrap nv-sparklineplus"),N=T.append("g"),C=S.select("g");N.append("g").attr("class","nv-sparklineWrap"),N.append("g").attr("class","nv-valueWrap"),N.append("g").attr("class","nv-hoverArea"),S.attr("transform","translate("+n.left+","+n.top+")");var k=C.select(".nv-sparklineWrap");t.width(g).height(b),k.call(t);var 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n(n){n?(t.fadeIn("fast"),e.removeClass("toggle-expand"),e.addClass("toggle"),e.is_expanded=!0):(t.hide(),e.removeClass("toggle"),e.addClass("toggle-expand"),e.is_expanded=!1)}e.on("click",function(){n(!e.is_expanded)})}function r(e,s){for(i in s){var o=s[i],u=o.options.length>0,a=$("<div/>");if(u){var f=$('<span class="ui-drilldown-button form-toggle icon-button toggle-expand" style="position: relative; top: 2px;"/>'),l=$("<div/>");l.append(f),l.append(t._templateOption(o.name,o.value)),a.append(l);var c=$('<div style="display: none; margin-left: 25px;"/>');r(c,o.options),a.append(c),n(f,c)}else a.append(t._templateOption(o.name,o.value));e.append(a)}}var t=this,s=$("<div/>");return r(s,e),s},_template:function(e){return'<div class="ui-options drilldown-container" id="'+e.id+'"/>'}});return{View:n}}),define("mvc/ui/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"",floating:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a class="dropdown-item" href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'">'+'<div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'">'+'<i class="icon fa '+e.icon+'"/>';return e.title&&(r+=' <span class="title">'+e.title+"</span>"),r+="</div></div>",r}})}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"},value:function(){return options.title}}),f=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/> '+e.title+"</div>"}}),l=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),c=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),h=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),p=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>"),this.options.message&&this.update(this.options)},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout);if(!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="ui-message alert alert-'+e.status+'"/>'}}),d=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),v=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),m=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value)},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<hidden id="'+e.id+'" value="'+e.value+'"/>'}});return{Anchor:h,Button:l,ButtonIcon:c,ButtonMenu:s,Icon:f,Image:u,Input:v,Label:a,Message:p,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:d,Select:t,Hidden:m,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){if(this.queue.length>0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var r=this;this.chart.on("redraw",function(){r._draw(r.chart)}),this.chart.on("set:state",function(){var e=r.$el.find("#info"),t=r.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(r.chart.get("state_info"));var i=r.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=this.app.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){this.app.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null,max:null,onchange:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.current_id=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},size:function(){return _.size(this.list)},current:function(){return this.$el.find(".tab-pane.active").attr("id")},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),this.size()==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n),this.options.max&&this.size()>=this.options.max&&this.$el.find("#new-tab").hide();if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)}),this.current_id||(this.current_id=n)},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab),this.list[e]&&delete this.list[e],this.size()<this.options.max&&this.$el.find("#new-tab").show()},delRemovable:function(){for(var e in this.list)this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find("#tab-"+this.current_id).removeClass("active"),this.$el.find("#"+this.current_id).removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#"+e).addClass("active"),this.current_id=e),this.options.onchange&&this.options.onchange(e)},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},retitle:function(e){var t=0;for(var n in this.list)this.title(n,++t+": "+e)},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'" class="tab-title-text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("mvc/ui/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",cls_tr:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=this._row()},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e,t){this._commit(e,t,!1)},prepend:function(e,t){this._commit(e,t,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t,n){this.del(e),this.row.attr("id",e),n?this.$tbody.prepend(this.row):this.$tbody.append(this.row),t&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return $('<tr class="'+this.options.cls_tr+'"></tr>')},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="'+e.cls+'">'+"<thead></thead>"+"<tbody></tbody>"+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div 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o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" 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v.size(2.2).sizeDomain([2.2,2.2]),v.dispatch.on("elementClick.area",function(e){m.areaClick(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],m.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){m.tooltipHide(e)}),g.dispatch=m,g.scatter=v,d3.rebind(g,v,"interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","highlightPoint","clearHighlights"),g.options=e.utils.optionsFunc.bind(g),g.x=function(e){return arguments.length?(o=d3.functor(e),g):o},g.y=function(e){return arguments.length?(u=d3.functor(e),g):u},g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return 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+.ui-portlet,.ui-portlet-slim,.ui-portlet-repeat,.ui-portlet-slim,.ui-portlet-repeat{border:solid #d6b161 1px;-webkit-border-radius:3px;-moz-border-radius:3px;border-radius:3px;position:relative;clear:both;width:auto;height:100%}.ui-portlet .portlet-header,.ui-portlet-slim .portlet-header{background:#ebd9b2;border-bottom:solid #d6b161 1px;padding:2px 8px;overflow:visible;float:right;width:100%}.ui-portlet .portlet-header .portlet-title,.ui-portlet-slim .portlet-header .portlet-title{display:inline;vertical-align:middle}.ui-portlet .portlet-header .portlet-title .portlet-title-text,.ui-portlet-slim .portlet-header .portlet-title .portlet-title-text{vertical-align:middle}
.ui-portlet .portlet-header .portlet-title .icon,.ui-portlet-slim .portlet-header .portlet-title .icon{font-size:1.2em;vertical-align:middle}
.ui-portlet .portlet-buttons,.ui-portlet-slim .portlet-buttons{height:50px;padding:10px}
.ui-portlet .portlet-content,.ui-portlet-slim .portlet-content{height:inherit;padding:10px;clear:both}.ui-portlet .portlet-content .content,.ui-portlet-slim .portlet-content .content{padding:10px;height:100%;width:100%}.ui-portlet .portlet-content .content .buttons,.ui-portlet-slim .portlet-content .content .buttons{height:50px;padding:10px}
diff -r a8aa8c67fe5335df93e3195bb46beb62783325bd -r eca8b8ed910366a2f72b778ace674e3126832e66 static/style/src/less/ui.less
--- a/static/style/src/less/ui.less
+++ b/static/style/src/less/ui.less
@@ -163,6 +163,8 @@
width:100%;
.portlet-title {
+ display: inline;
+ vertical-align: middle;
.portlet-title-text {
vertical-align: middle;
}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: ToolForm: Show labels for menu bar buttons
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/a8aa8c67fe53/
Changeset: a8aa8c67fe53
User: guerler
Date: 2014-12-10 15:16:04+00:00
Summary: ToolForm: Show labels for menu bar buttons
Affected #: 3 files
diff -r 3e068b37bca33448451682275b0bbb27d594ba41 -r a8aa8c67fe5335df93e3195bb46beb62783325bd client/galaxy/scripts/mvc/tools/tools-form.js
--- a/client/galaxy/scripts/mvc/tools/tools-form.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form.js
@@ -312,6 +312,7 @@
// button for version selection
var requirements_button = new Ui.ButtonIcon({
icon : 'fa-info-circle',
+ title : 'Requirements',
tooltip : 'Display tool requirements',
onclick : function() {
if (!this.visible) {
@@ -342,12 +343,13 @@
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
versions_button.addMenu({
- title : options.versions[i],
+ title : 'Switch to ' + options.versions[i],
+ version : options.versions[i],
icon : 'fa-cube',
onclick : function() {
// here we update the tool version (some tools encode the version also in the id)
- options.id = options.id.replace(options.version, this.title);
- options.version = this.title;
+ options.id = options.id.replace(options.version, this.version);
+ options.version = this.version;
// rebuild the model and form
self.deferred.reset();
@@ -362,6 +364,7 @@
// button menu
var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
+ title : 'Options',
tooltip : 'View available options'
});
diff -r 3e068b37bca33448451682275b0bbb27d594ba41 -r a8aa8c67fe5335df93e3195bb46beb62783325bd static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -312,6 +312,7 @@
// button for version selection
var requirements_button = new Ui.ButtonIcon({
icon : 'fa-info-circle',
+ title : 'Requirements',
tooltip : 'Display tool requirements',
onclick : function() {
if (!this.visible) {
@@ -342,12 +343,13 @@
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
versions_button.addMenu({
- title : options.versions[i],
+ title : 'Switch to ' + options.versions[i],
+ version : options.versions[i],
icon : 'fa-cube',
onclick : function() {
// here we update the tool version (some tools encode the version also in the id)
- options.id = options.id.replace(options.version, this.title);
- options.version = this.title;
+ options.id = options.id.replace(options.version, this.version);
+ options.version = this.version;
// rebuild the model and form
self.deferred.reset();
@@ -362,6 +364,7 @@
// button menu
var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
+ title : 'Options',
tooltip : 'View available options'
});
diff -r 3e068b37bca33448451682275b0bbb27d594ba41 -r a8aa8c67fe5335df93e3195bb46beb62783325bd static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"View available options"});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:"Switch to "+x.versions[r],version:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.version);x.version=this.version;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",title:"Options",tooltip:"View available options"});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: ToolForm: Update tool tips
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/3e068b37bca3/
Changeset: 3e068b37bca3
User: guerler
Date: 2014-12-10 14:56:23+00:00
Summary: ToolForm: Update tool tips
Affected #: 3 files
diff -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 -r 3e068b37bca33448451682275b0bbb27d594ba41 client/galaxy/scripts/mvc/tools/tools-form.js
--- a/client/galaxy/scripts/mvc/tools/tools-form.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form.js
@@ -312,7 +312,7 @@
// button for version selection
var requirements_button = new Ui.ButtonIcon({
icon : 'fa-info-circle',
- tooltip : 'Click to show/hide the tool requirements.',
+ tooltip : 'Display tool requirements',
onclick : function() {
if (!this.visible) {
this.visible = true;
@@ -337,7 +337,7 @@
var versions_button = new Ui.ButtonMenu({
icon : 'fa-cubes',
title : 'Versions',
- tooltip : 'Click to view available versions.'
+ tooltip : 'Select another tool version'
});
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
@@ -362,7 +362,7 @@
// button menu
var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
- tooltip : 'Click to view a list of options.'
+ tooltip : 'View available options'
});
// configure button selection
diff -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 -r 3e068b37bca33448451682275b0bbb27d594ba41 static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -312,7 +312,7 @@
// button for version selection
var requirements_button = new Ui.ButtonIcon({
icon : 'fa-info-circle',
- tooltip : 'Click to show/hide the tool requirements.',
+ tooltip : 'Display tool requirements',
onclick : function() {
if (!this.visible) {
this.visible = true;
@@ -337,7 +337,7 @@
var versions_button = new Ui.ButtonMenu({
icon : 'fa-cubes',
title : 'Versions',
- tooltip : 'Click to view available versions.'
+ tooltip : 'Select another tool version'
});
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
@@ -362,7 +362,7 @@
// button menu
var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
- tooltip : 'Click to view a list of options.'
+ tooltip : 'View available options'
});
// configure button selection
diff -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 -r 3e068b37bca33448451682275b0bbb27d594ba41 static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"View available options"});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Scratchbook: Fix renamed resize icon
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/5893d4487c1d/
Changeset: 5893d4487c1d
User: guerler
Date: 2014-12-10 08:48:37+00:00
Summary: Scratchbook: Fix renamed resize icon
Affected #: 3 files
diff -r da7372555da025bdc48c1a00278e282f200b2fc2 -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 client/galaxy/scripts/mvc/ui/ui-frames.js
--- a/client/galaxy/scripts/mvc/ui/ui-frames.js
+++ b/client/galaxy/scripts/mvc/ui/ui-frames.js
@@ -1003,7 +1003,7 @@
'<div class="f-content">' +
'<div class="f-cover"></div>' +
'</div>' +
- '<span class="f-resize f-icon corner fa fa-resize-full"></span>' +
+ '<span class="f-resize f-icon corner fa fa-expand"></span>' +
'</div>';
},
diff -r da7372555da025bdc48c1a00278e282f200b2fc2 -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 static/scripts/mvc/ui/ui-frames.js
--- a/static/scripts/mvc/ui/ui-frames.js
+++ b/static/scripts/mvc/ui/ui-frames.js
@@ -1003,7 +1003,7 @@
'<div class="f-content">' +
'<div class="f-cover"></div>' +
'</div>' +
- '<span class="f-resize f-icon corner fa fa-resize-full"></span>' +
+ '<span class="f-resize f-icon corner fa fa-expand"></span>' +
'</div>';
},
diff -r da7372555da025bdc48c1a00278e282f200b2fc2 -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 static/scripts/packed/mvc/ui/ui-frames.js
--- a/static/scripts/packed/mvc/ui/ui-frames.js
+++ b/static/scripts/packed/mvc/ui/ui-frames.js
@@ -1,1 +1,1 @@
-define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._templateBackground());$(this.el).append(this._templateMenu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._templateShadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frameResize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panelRefresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panelRefresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._templateFrameUrl(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._templateFrame(d.substring(1),c.title));var b=e.find(".f-content");if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._toPixelCoord("width",this.options.frame.cols);c.height=this._toPixelCoord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frameResize(g,{width:c.width,height:c.height});this._frameInsert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panelRefresh();this._menuRefresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menuRefresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_eventFrameMouseMove",mouseup:"_eventFrameMouseUp",mouseleave:"_eventFrameMouseUp",mousewheel:"_eventPanelScroll",DOMMouseScroll:"_eventPanelScroll","mousedown .frame":"_eventFrameMouseDown","mousedown .frame-background":"_eventHide","mousedown .frame-scroll-up":"_eventPanelScroll_up","mousedown .frame-scroll-down":"_eventPanelScroll_down","mousedown .f-close":"_eventFrameClose","mousedown .f-pin":"_eventFrameLock"},_eventFrameMouseDown:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frameIdentify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frameDragStart(this.event.target)},_eventFrameMouseMove:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frameScreen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frameResize(this.event.target,g);g.width=this._toGridCoord("width",g.width)+1;g.height=this._toGridCoord("height",g.height)+1;g.width=this._toPixelCoord("width",g.width);g.height=this._toPixelCoord("height",g.height);this._frameResize(this.frame_shadow,g);this._frameInsert(this.frame_shadow,{top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frameOffset(this.event.target,g);var b={top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)};if(b.left!==0){b.left++}this._frameInsert(this.frame_shadow,b)}},_eventFrameMouseUp:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frameDragStop(this.event.target);this.event.type=null},_eventFrameClose:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frameIdentify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panelRefresh(true);b._panelAnimationComplete();if(b.visible&&b.frame_counter==0){b.hide()}})},_eventFrameLock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frameIdentify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_eventHide:function(b){if(this.event.type!==null){return}this.hide()},_eventPanelScroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panelScroll(d)},_eventPanelScroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(-this.options.scroll)},_eventPanelScroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(this.options.scroll)},_frameIdentify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frameDragStart:function(c){this._frameFocus(c,true);var b=this._frameScreen(c);this._frameResize(this.frame_shadow,b);this._frameGrid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frameDragStop:function(c){this._frameFocus(c,false);var b=this._frameScreen(this.frame_shadow);this._frameResize(c,b);this._frameGrid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panelAnimationComplete()},_toGridCoord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_toPixelCoord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_toGrid:function(b){return{top:this._toGridCoord("top",b.top),left:this._toGridCoord("left",b.left),width:this._toGridCoord("width",b.width),height:this._toGridCoord("height",b.height)}},_toPixel:function(b){return{top:this._toPixelCoord("top",b.top),left:this._toPixelCoord("left",b.left),width:this._toPixelCoord("width",b.width),height:this._toPixelCoord("height",b.height)}},_isCollision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1<f.left||g.top>f.top+f.height-1||g.top+g.height-1<f.top)}for(var c in this.frame_list){var e=this.frame_list[c];if(e.grid_location===null){continue}if(b(d,e.grid_location)){return true}}return false},_locationRank:function(b){return(b.top*this.cols)+b.left},_menuRefresh:function(){if(this.visible){if(this.top==this.options.top_min){$(".frame-scroll-up").hide()}else{$(".frame-scroll-up").show()}if(this.top==this.top_max){$(".frame-scroll-down").hide()}else{$(".frame-scroll-down").show()}}if(this.options.onchange){this.options.onchange()}},_panelAnimationComplete:function(){var b=this;$(".frame").promise().done(function(){b._panelScroll(0,true)})},_panelRefresh:function(b){this.cols=parseInt($(window).width()/this.options.cell,10)+1;this._frameInsert(null,null,b)},_panelScroll:function(g,b){var d=this.top-this.options.scroll*g;d=Math.max(d,this.top_max);d=Math.min(d,this.options.top_min);if(this.top!=d){for(var c in this.frame_list){var f=this.frame_list[c];if(f.grid_location!==null){var e={top:f.screen_location.top-(this.top-d),left:f.screen_location.left};this._frameOffset(f,e,b)}}this.top=d}this._menuRefresh()},_frameInsert:function(h,b,d){var c=[];if(h){h.grid_location=null;c.push([h,this._locationRank(b)])}var e=null;for(e in this.frame_list){var g=this.frame_list[e];if(g.grid_location!==null&&!g.grid_lock){g.grid_location=null;c.push([g,g.grid_rank])}}c.sort(function(k,f){var m=k[1];var l=f[1];return m<l?-1:(m>l?1:0)});for(e=0;e<c.length;e++){this._framePlace(c[e][0],d)}this.top_max=0;for(var e in this.frame_list){var h=this.frame_list[e];if(h.grid_location!==null){this.top_max=Math.max(this.top_max,h.grid_location.top+h.grid_location.height)}}this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin;this.top_max=Math.min(this.top_max,this.options.top_min);this._menuRefresh()},_framePlace:function(h,c){h.grid_location=null;var f=this._toGrid(this._frameScreen(h));var b=false;for(var e=0;e<this.options.rows;e++){for(var d=0;d<Math.max(1,this.cols-f.width);d++){f.top=e;f.left=d;if(!this._isCollision(f)){b=true;break}}if(b){break}}if(b){this._frameGrid(h,f,c)}else{console.log("Grid dimensions exceeded.")}},_frameFocus:function(d,b){var c=this.frame_z+(b?1:0);$(d.id).css("z-index",c)},_frameOffset:function(e,d,c){e.screen_location.left=d.left;e.screen_location.top=d.top;if(c){this._frameFocus(e,true);var b=this;$(e.id).animate({top:d.top,left:d.left},"fast",function(){b._frameFocus(e,false)})}else{$(e.id).css({top:d.top,left:d.left})}},_frameResize:function(c,b){$(c.id).css({width:b.width,height:b.height});c.screen_location.width=b.width;c.screen_location.height=b.height},_frameGrid:function(d,b,c){d.grid_location=b;this._frameOffset(d,this._toPixel(b),c);d.grid_rank=this._locationRank(b)},_frameScreen:function(c){var b=c.screen_location;return{top:b.top,left:b.left,width:b.width,height:b.height}},_template:function(){return'<div class="galaxy-frame"></div>'},_templateFrame:function(c,b){if(!b){b=""}return'<div id="'+c+'" class="frame corner"><div class="f-header corner"><span class="f-title">'+b+'</span><span class="f-icon f-close fa fa-trash-o"></span><span class="f-icon f-pin fa fa-thumb-tack"></span></div><div class="f-content"><div class="f-cover"></div></div><span class="f-resize f-icon corner fa fa-resize-full"></span></div>'},_templateFrameUrl:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._templateFrame(e,d));c.find(".f-content").append('<iframe scrolling="auto" class="f-iframe" src="'+b+'"></iframe>');return c},_templateShadow:function(b){return'<div id="'+b+'" class="frame-shadow corner"></div>'},_templateBackground:function(){return'<div class="frame-background"></div>'},_templateMenu:function(){return'<div class="frame-scroll-up frame-menu fa fa-chevron-up fa-2x"></div><div class="frame-scroll-down frame-menu fa fa-chevron-down fa-2x"></div>'}});return{View:a}});
\ No newline at end of file
+define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._templateBackground());$(this.el).append(this._templateMenu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._templateShadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frameResize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panelRefresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panelRefresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._templateFrameUrl(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._templateFrame(d.substring(1),c.title));var b=e.find(".f-content");if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._toPixelCoord("width",this.options.frame.cols);c.height=this._toPixelCoord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frameResize(g,{width:c.width,height:c.height});this._frameInsert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panelRefresh();this._menuRefresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menuRefresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_eventFrameMouseMove",mouseup:"_eventFrameMouseUp",mouseleave:"_eventFrameMouseUp",mousewheel:"_eventPanelScroll",DOMMouseScroll:"_eventPanelScroll","mousedown .frame":"_eventFrameMouseDown","mousedown .frame-background":"_eventHide","mousedown .frame-scroll-up":"_eventPanelScroll_up","mousedown .frame-scroll-down":"_eventPanelScroll_down","mousedown .f-close":"_eventFrameClose","mousedown .f-pin":"_eventFrameLock"},_eventFrameMouseDown:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frameIdentify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frameDragStart(this.event.target)},_eventFrameMouseMove:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frameScreen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frameResize(this.event.target,g);g.width=this._toGridCoord("width",g.width)+1;g.height=this._toGridCoord("height",g.height)+1;g.width=this._toPixelCoord("width",g.width);g.height=this._toPixelCoord("height",g.height);this._frameResize(this.frame_shadow,g);this._frameInsert(this.frame_shadow,{top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frameOffset(this.event.target,g);var b={top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)};if(b.left!==0){b.left++}this._frameInsert(this.frame_shadow,b)}},_eventFrameMouseUp:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frameDragStop(this.event.target);this.event.type=null},_eventFrameClose:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frameIdentify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panelRefresh(true);b._panelAnimationComplete();if(b.visible&&b.frame_counter==0){b.hide()}})},_eventFrameLock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frameIdentify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_eventHide:function(b){if(this.event.type!==null){return}this.hide()},_eventPanelScroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panelScroll(d)},_eventPanelScroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(-this.options.scroll)},_eventPanelScroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(this.options.scroll)},_frameIdentify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frameDragStart:function(c){this._frameFocus(c,true);var b=this._frameScreen(c);this._frameResize(this.frame_shadow,b);this._frameGrid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frameDragStop:function(c){this._frameFocus(c,false);var b=this._frameScreen(this.frame_shadow);this._frameResize(c,b);this._frameGrid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panelAnimationComplete()},_toGridCoord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_toPixelCoord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_toGrid:function(b){return{top:this._toGridCoord("top",b.top),left:this._toGridCoord("left",b.left),width:this._toGridCoord("width",b.width),height:this._toGridCoord("height",b.height)}},_toPixel:function(b){return{top:this._toPixelCoord("top",b.top),left:this._toPixelCoord("left",b.left),width:this._toPixelCoord("width",b.width),height:this._toPixelCoord("height",b.height)}},_isCollision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1<f.left||g.top>f.top+f.height-1||g.top+g.height-1<f.top)}for(var c in this.frame_list){var e=this.frame_list[c];if(e.grid_location===null){continue}if(b(d,e.grid_location)){return true}}return false},_locationRank:function(b){return(b.top*this.cols)+b.left},_menuRefresh:function(){if(this.visible){if(this.top==this.options.top_min){$(".frame-scroll-up").hide()}else{$(".frame-scroll-up").show()}if(this.top==this.top_max){$(".frame-scroll-down").hide()}else{$(".frame-scroll-down").show()}}if(this.options.onchange){this.options.onchange()}},_panelAnimationComplete:function(){var b=this;$(".frame").promise().done(function(){b._panelScroll(0,true)})},_panelRefresh:function(b){this.cols=parseInt($(window).width()/this.options.cell,10)+1;this._frameInsert(null,null,b)},_panelScroll:function(g,b){var d=this.top-this.options.scroll*g;d=Math.max(d,this.top_max);d=Math.min(d,this.options.top_min);if(this.top!=d){for(var c in this.frame_list){var f=this.frame_list[c];if(f.grid_location!==null){var e={top:f.screen_location.top-(this.top-d),left:f.screen_location.left};this._frameOffset(f,e,b)}}this.top=d}this._menuRefresh()},_frameInsert:function(h,b,d){var c=[];if(h){h.grid_location=null;c.push([h,this._locationRank(b)])}var e=null;for(e in this.frame_list){var g=this.frame_list[e];if(g.grid_location!==null&&!g.grid_lock){g.grid_location=null;c.push([g,g.grid_rank])}}c.sort(function(k,f){var m=k[1];var l=f[1];return m<l?-1:(m>l?1:0)});for(e=0;e<c.length;e++){this._framePlace(c[e][0],d)}this.top_max=0;for(var e in this.frame_list){var h=this.frame_list[e];if(h.grid_location!==null){this.top_max=Math.max(this.top_max,h.grid_location.top+h.grid_location.height)}}this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin;this.top_max=Math.min(this.top_max,this.options.top_min);this._menuRefresh()},_framePlace:function(h,c){h.grid_location=null;var f=this._toGrid(this._frameScreen(h));var b=false;for(var e=0;e<this.options.rows;e++){for(var d=0;d<Math.max(1,this.cols-f.width);d++){f.top=e;f.left=d;if(!this._isCollision(f)){b=true;break}}if(b){break}}if(b){this._frameGrid(h,f,c)}else{console.log("Grid dimensions exceeded.")}},_frameFocus:function(d,b){var c=this.frame_z+(b?1:0);$(d.id).css("z-index",c)},_frameOffset:function(e,d,c){e.screen_location.left=d.left;e.screen_location.top=d.top;if(c){this._frameFocus(e,true);var b=this;$(e.id).animate({top:d.top,left:d.left},"fast",function(){b._frameFocus(e,false)})}else{$(e.id).css({top:d.top,left:d.left})}},_frameResize:function(c,b){$(c.id).css({width:b.width,height:b.height});c.screen_location.width=b.width;c.screen_location.height=b.height},_frameGrid:function(d,b,c){d.grid_location=b;this._frameOffset(d,this._toPixel(b),c);d.grid_rank=this._locationRank(b)},_frameScreen:function(c){var b=c.screen_location;return{top:b.top,left:b.left,width:b.width,height:b.height}},_template:function(){return'<div class="galaxy-frame"></div>'},_templateFrame:function(c,b){if(!b){b=""}return'<div id="'+c+'" class="frame corner"><div class="f-header corner"><span class="f-title">'+b+'</span><span class="f-icon f-close fa fa-trash-o"></span><span class="f-icon f-pin fa fa-thumb-tack"></span></div><div class="f-content"><div class="f-cover"></div></div><span class="f-resize f-icon corner fa fa-expand"></span></div>'},_templateFrameUrl:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._templateFrame(e,d));c.find(".f-content").append('<iframe scrolling="auto" class="f-iframe" src="'+b+'"></iframe>');return c},_templateShadow:function(b){return'<div id="'+b+'" class="frame-shadow corner"></div>'},_templateBackground:function(){return'<div class="frame-background"></div>'},_templateMenu:function(){return'<div class="frame-scroll-up frame-menu fa fa-chevron-up fa-2x"></div><div class="frame-scroll-down frame-menu fa fa-chevron-down fa-2x"></div>'}});return{View:a}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/da7372555da0/
Changeset: da7372555da0
User: guerler
Date: 2014-12-10 08:38:16+00:00
Summary: ToolForm: Fix typo
Affected #: 3 files
diff -r dae2fd928357c019b33db953fd840eab8512a1a3 -r da7372555da025bdc48c1a00278e282f200b2fc2 client/galaxy/scripts/mvc/tools/tools-form.js
--- a/client/galaxy/scripts/mvc/tools/tools-form.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form.js
@@ -122,7 +122,7 @@
// notification
self.message.update({
status : 'success',
- message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.',
+ message : 'Now you are using \'' + self.options.name + '\' version ' + self.options.version + '.',
persistent : false
});
diff -r dae2fd928357c019b33db953fd840eab8512a1a3 -r da7372555da025bdc48c1a00278e282f200b2fc2 static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -122,7 +122,7 @@
// notification
self.message.update({
status : 'success',
- message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.',
+ message : 'Now you are using \'' + self.options.name + '\' version ' + self.options.version + '.',
persistent : false
});
diff -r dae2fd928357c019b33db953fd840eab8512a1a3 -r da7372555da025bdc48c1a00278e282f200b2fc2 static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Ui: Allow portlet elements without paragraph wrapping
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/dae2fd928357/
Changeset: dae2fd928357
User: guerler
Date: 2014-12-10 08:35:36+00:00
Summary: Ui: Allow portlet elements without paragraph wrapping
Affected #: 6 files
diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 client/galaxy/scripts/mvc/tools/tools-form.js
--- a/client/galaxy/scripts/mvc/tools/tools-form.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form.js
@@ -469,7 +469,7 @@
}
// append message
- this.portlet.append(this.message.$el);
+ this.portlet.append(this.message.$el, true);
// append tool section
this.portlet.append(this.section.$el);
diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 client/galaxy/scripts/mvc/ui/ui-portlet.js
--- a/client/galaxy/scripts/mvc/ui/ui-portlet.js
+++ b/client/galaxy/scripts/mvc/ui/ui-portlet.js
@@ -89,10 +89,14 @@
},
// append
- append: function($el) {
- this.$content.append(Utils.wrap($el));
+ append: function($el, unwrapped) {
+ if (unwrapped) {
+ this.$content.append($el);
+ } else {
+ this.$content.append(Utils.wrap($el));
+ }
},
-
+
// content
content: function() {
return this.$content;
diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -469,7 +469,7 @@
}
// append message
- this.portlet.append(this.message.$el);
+ this.portlet.append(this.message.$el, true);
// append tool section
this.portlet.append(this.section.$el);
diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/mvc/ui/ui-portlet.js
--- a/static/scripts/mvc/ui/ui-portlet.js
+++ b/static/scripts/mvc/ui/ui-portlet.js
@@ -89,10 +89,14 @@
},
// append
- append: function($el) {
- this.$content.append(Utils.wrap($el));
+ append: function($el, unwrapped) {
+ if (unwrapped) {
+ this.$content.append($el);
+ } else {
+ this.$content.append(Utils.wrap($el));
+ }
},
-
+
// content
content: function() {
return this.$content;
diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/packed/mvc/ui/ui-portlet.js
--- a/static/scripts/packed/mvc/ui/ui-portlet.js
+++ b/static/scripts/packed/mvc/ui/ui-portlet.js
@@ -1,1 +1,1 @@
-define(["utils/utils"],function(a){var b=Backbone.View.extend({visible:false,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:true,nopadding:false,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(e){this.options=a.merge(e,this.optionsDefault);this.setElement(this._template(this.options));this.$content=this.$el.find("#content");this.$title=this.$el.find("#portlet-title-text");var d=this.$el.find("#portlet-content");if(!this.options.scrollable){if(this.options.title){d.addClass("no-scroll")}else{d.addClass("no-scroll-no-title")}}else{d.addClass("scroll")}if(this.options.nopadding){d.css("padding","0px");this.$content.css("padding","0px")}this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var c=this;$.each(this.options.buttons,function(f,g){g.$el.prop("id",f);c.$buttons.append(g.$el)})}else{this.$buttons.remove()}this.$operations=$(this.el).find("#operations");if(this.options.operations){var c=this;$.each(this.options.operations,function(f,g){g.$el.prop("id",f);c.$operations.append(g.$el)})}if(this.options.body){this.append(this.options.body)}},append:function(c){this.$content.append(a.wrap(c))},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast");this.visible=true},hide:function(){this.$el.fadeOut("fast");this.visible=false},enableButton:function(c){this.$buttons.find("#"+c).prop("disabled",false)},disableButton:function(c){this.$buttons.find("#"+c).prop("disabled",true)},hideOperation:function(c){this.$operations.find("#"+c).hide()},showOperation:function(c){this.$operations.find("#"+c).show()},setOperation:function(e,d){var c=this.$operations.find("#"+e);c.off("click");c.on("click",d)},title:function(d){var c=this.$title;if(d){c.html(d)}return c.html()},_template:function(d){var c='<div id="'+d.id+'" class="'+d.cls+'">';if(d.title){c+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: '+d.operations_flt+';"></div><div class="portlet-title">';if(d.icon){c+='<i class="icon fa '+d.icon+'"> </i>'}c+='<span id="portlet-title-text" class="portlet-title-text">'+d.title+"</span></div></div>"}c+='<div id="portlet-content" class="portlet-content">';if(d.placement=="top"){c+='<div id="buttons" class="buttons"></div>'}c+='<div id="content" class="content"></div>';if(d.placement=="bottom"){c+='<div id="buttons" class="buttons"></div>'}c+="</div></div>";return c}});return{View:b}});
\ No newline at end of file
+define(["utils/utils"],function(a){var b=Backbone.View.extend({visible:false,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:true,nopadding:false,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(e){this.options=a.merge(e,this.optionsDefault);this.setElement(this._template(this.options));this.$content=this.$el.find("#content");this.$title=this.$el.find("#portlet-title-text");var d=this.$el.find("#portlet-content");if(!this.options.scrollable){if(this.options.title){d.addClass("no-scroll")}else{d.addClass("no-scroll-no-title")}}else{d.addClass("scroll")}if(this.options.nopadding){d.css("padding","0px");this.$content.css("padding","0px")}this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var c=this;$.each(this.options.buttons,function(f,g){g.$el.prop("id",f);c.$buttons.append(g.$el)})}else{this.$buttons.remove()}this.$operations=$(this.el).find("#operations");if(this.options.operations){var c=this;$.each(this.options.operations,function(f,g){g.$el.prop("id",f);c.$operations.append(g.$el)})}if(this.options.body){this.append(this.options.body)}},append:function(d,c){if(c){this.$content.append(d)}else{this.$content.append(a.wrap(d))}},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast");this.visible=true},hide:function(){this.$el.fadeOut("fast");this.visible=false},enableButton:function(c){this.$buttons.find("#"+c).prop("disabled",false)},disableButton:function(c){this.$buttons.find("#"+c).prop("disabled",true)},hideOperation:function(c){this.$operations.find("#"+c).hide()},showOperation:function(c){this.$operations.find("#"+c).show()},setOperation:function(e,d){var c=this.$operations.find("#"+e);c.off("click");c.on("click",d)},title:function(d){var c=this.$title;if(d){c.html(d)}return c.html()},_template:function(d){var c='<div id="'+d.id+'" class="'+d.cls+'">';if(d.title){c+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: '+d.operations_flt+';"></div><div class="portlet-title">';if(d.icon){c+='<i class="icon fa '+d.icon+'"> </i>'}c+='<span id="portlet-title-text" class="portlet-title-text">'+d.title+"</span></div></div>"}c+='<div id="portlet-content" class="portlet-content">';if(d.placement=="top"){c+='<div id="buttons" class="buttons"></div>'}c+='<div id="content" class="content"></div>';if(d.placement=="bottom"){c+='<div id="buttons" class="buttons"></div>'}c+="</div></div>";return c}});return{View:b}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: ToolForm: Add tool requirement details
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/9b4153f9ccd5/
Changeset: 9b4153f9ccd5
User: guerler
Date: 2014-12-10 08:22:19+00:00
Summary: ToolForm: Add tool requirement details
Affected #: 7 files
diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 client/galaxy/scripts/mvc/tools/tools-form.js
--- a/client/galaxy/scripts/mvc/tools/tools-form.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form.js
@@ -119,6 +119,13 @@
// build form
self._buildForm();
+ // notification
+ self.message.update({
+ status : 'success',
+ message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.',
+ persistent : false
+ });
+
// process completed
self.deferred.done(process_id);
@@ -282,11 +289,55 @@
// link model options
var options = this.options;
+ // create message view
+ this.message = new Ui.Message();
+
+ // construct tool requirements message content
+ var requirements_message = 'This tool requires ';
+ for (var i in options.requirements) {
+ var req = options.requirements[i];
+ requirements_message += req.name;
+ if (req.version) {
+ requirements_message += ' (Version ' + req.version + ')';
+ }
+ if (i < options.requirements.length - 2) {
+ requirements_message += ', ';
+ }
+ if (i == options.requirements.length - 2) {
+ requirements_message += ' and ';
+ }
+ }
+ requirements_message += '.';
+
+ // button for version selection
+ var requirements_button = new Ui.ButtonIcon({
+ icon : 'fa-info-circle',
+ tooltip : 'Click to show/hide the tool requirements.',
+ onclick : function() {
+ if (!this.visible) {
+ this.visible = true;
+ self.message.update({
+ persistent : true,
+ message : requirements_message,
+ status : 'warning'
+ });
+ } else {
+ this.visible = false;
+ self.message.update({
+ message : ''
+ });
+ }
+ }
+ });
+ if (!options.requirements || options.requirements.length == 0) {
+ requirements_button.$el.hide();
+ }
+
// button for version selection
var versions_button = new Ui.ButtonMenu({
icon : 'fa-cubes',
title : 'Versions',
- tooltip : 'Click to see available versions.'
+ tooltip : 'Click to view available versions.'
});
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
@@ -311,7 +362,7 @@
// button menu
var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
- tooltip : 'Click to see a list of options.'
+ tooltip : 'Click to view a list of options.'
});
// configure button selection
@@ -379,8 +430,9 @@
title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')',
cls : 'ui-portlet-slim',
operations: {
- menu : menu_button,
- versions : versions_button
+ requirements : requirements_button,
+ menu : menu_button,
+ versions : versions_button
},
buttons: {
execute : new Ui.Button({
@@ -417,20 +469,22 @@
}
// append message
- if (options.message) {
- var message = new Ui.Message({
- persistent : true,
- status : 'warning',
- message : options.message
- });
- this.portlet.append(message.$el);
- }
+ this.portlet.append(this.message.$el);
// append tool section
this.portlet.append(this.section.$el);
// rebuild the underlying data structure
this.rebuild();
+
+ // show message if available in model
+ if (options.message) {
+ this.message.update({
+ persistent : true,
+ status : 'warning',
+ message : options.message
+ });
+ }
}
});
diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 client/galaxy/scripts/mvc/ui/ui-misc.js
--- a/client/galaxy/scripts/mvc/ui/ui-misc.js
+++ b/client/galaxy/scripts/mvc/ui/ui-misc.js
@@ -278,11 +278,15 @@
this.$el.find('.alert').append(options.message);
this.$el.fadeIn();
- // check if message is persistent
+ // clear previous timeouts
+ if (this.timeout) {
+ window.clearTimeout(this.timeout);
+ }
+
+ // set timeout if message is not persistent
if (!options.persistent) {
- // set timer
var self = this;
- window.setTimeout(function() {
+ this.timeout = window.setTimeout(function() {
if (self.$el.is(':visible')) {
self.$el.fadeOut();
} else {
diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 lib/galaxy/webapps/galaxy/api/tools.py
--- a/lib/galaxy/webapps/galaxy/api/tools.py
+++ b/lib/galaxy/webapps/galaxy/api/tools.py
@@ -741,13 +741,23 @@
for t in tools:
tool_versions.append(t.version)
+ ## add information with underlying requirements and their versions
+ tool_requirements = []
+ if tool.requirements:
+ for requirement in tool.requirements:
+ tool_requirements.append({
+ 'name' : requirement.name,
+ 'version' : requirement.version
+ })
+
# add additional properties
tool_model.update({
'help' : tool_help,
'citations' : tool_citations,
'biostar_url' : trans.app.config.biostar_url,
'message' : tool_message,
- 'versions' : tool_versions
+ 'versions' : tool_versions,
+ 'requirements' : tool_requirements
})
# check for errors
diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -119,6 +119,13 @@
// build form
self._buildForm();
+ // notification
+ self.message.update({
+ status : 'success',
+ message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.',
+ persistent : false
+ });
+
// process completed
self.deferred.done(process_id);
@@ -282,11 +289,55 @@
// link model options
var options = this.options;
+ // create message view
+ this.message = new Ui.Message();
+
+ // construct tool requirements message content
+ var requirements_message = 'This tool requires ';
+ for (var i in options.requirements) {
+ var req = options.requirements[i];
+ requirements_message += req.name;
+ if (req.version) {
+ requirements_message += ' (Version ' + req.version + ')';
+ }
+ if (i < options.requirements.length - 2) {
+ requirements_message += ', ';
+ }
+ if (i == options.requirements.length - 2) {
+ requirements_message += ' and ';
+ }
+ }
+ requirements_message += '.';
+
+ // button for version selection
+ var requirements_button = new Ui.ButtonIcon({
+ icon : 'fa-info-circle',
+ tooltip : 'Click to show/hide the tool requirements.',
+ onclick : function() {
+ if (!this.visible) {
+ this.visible = true;
+ self.message.update({
+ persistent : true,
+ message : requirements_message,
+ status : 'warning'
+ });
+ } else {
+ this.visible = false;
+ self.message.update({
+ message : ''
+ });
+ }
+ }
+ });
+ if (!options.requirements || options.requirements.length == 0) {
+ requirements_button.$el.hide();
+ }
+
// button for version selection
var versions_button = new Ui.ButtonMenu({
icon : 'fa-cubes',
title : 'Versions',
- tooltip : 'Click to see available versions.'
+ tooltip : 'Click to view available versions.'
});
if (options.versions && options.versions.length > 1) {
for (var i in options.versions) {
@@ -311,7 +362,7 @@
// button menu
var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
- tooltip : 'Click to see a list of options.'
+ tooltip : 'Click to view a list of options.'
});
// configure button selection
@@ -379,8 +430,9 @@
title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')',
cls : 'ui-portlet-slim',
operations: {
- menu : menu_button,
- versions : versions_button
+ requirements : requirements_button,
+ menu : menu_button,
+ versions : versions_button
},
buttons: {
execute : new Ui.Button({
@@ -417,20 +469,22 @@
}
// append message
- if (options.message) {
- var message = new Ui.Message({
- persistent : true,
- status : 'warning',
- message : options.message
- });
- this.portlet.append(message.$el);
- }
+ this.portlet.append(this.message.$el);
// append tool section
this.portlet.append(this.section.$el);
// rebuild the underlying data structure
this.rebuild();
+
+ // show message if available in model
+ if (options.message) {
+ this.message.update({
+ persistent : true,
+ status : 'warning',
+ message : options.message
+ });
+ }
}
});
diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/mvc/ui/ui-misc.js
--- a/static/scripts/mvc/ui/ui-misc.js
+++ b/static/scripts/mvc/ui/ui-misc.js
@@ -278,11 +278,15 @@
this.$el.find('.alert').append(options.message);
this.$el.fadeIn();
- // check if message is persistent
+ // clear previous timeouts
+ if (this.timeout) {
+ window.clearTimeout(this.timeout);
+ }
+
+ // set timeout if message is not persistent
if (!options.persistent) {
- // set timer
var self = this;
- window.setTimeout(function() {
+ this.timeout = window.setTimeout(function() {
if (self.$el.is(':visible')) {
self.$el.fadeOut();
} else {
diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var t=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var v=this.options;var o=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to see available versions."});if(v.versions&&v.versions.length>1){for(var q in v.versions){o.addMenu({title:v.versions[q],icon:"fa-cube",onclick:function(){v.id=v.id.replace(v.version,this.title);v.version=this.title;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}else{o.$el.hide()}var r=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to see a list of options."});if(v.biostar_url){r.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/p/new/post/")}});r.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/t/"+v.id+"/")}})}r.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+v.id)}});if(this.is_admin){r.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+v.id+"/download"}})}this.section=new l.View(t,{inputs:v.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+v.name+"</b> "+v.description+" (Version "+v.version+")",cls:"ui-portlet-slim",operations:{menu:r,versions:o},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+v.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){t.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(v.help!=""){this.$el.append(d.help(v.help))}if(v.citations){var s=$("<div/>");var n=new k.ToolCitationCollection();n.tool_id=v.id;var p=new a.CitationListView({el:s,collection:n});p.render();n.fetch();this.$el.append(s)}if(v.message){var u=new m.Message({persistent:true,status:"warning",message:v.message});this.portlet.append(u.$el)}this.portlet.append(this.section.$el);this.rebuild()}});return{View:b}});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}});
\ No newline at end of file
diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/packed/mvc/ui/ui-misc.js
--- a/static/scripts/packed/mvc/ui/ui-misc.js
+++ b/static/scripts/packed/mvc/ui/ui-misc.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(!s.persistent){var r=this;window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(this.timeout){window.clearTimeout(this.timeout)}if(!s.persistent){var r=this;this.timeout=window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Ui: Update Fontawesome, ToolForm: Add tool version handling
by commits-noreply＠bitbucket.org 10 Dec '14
by commits-noreply＠bitbucket.org 10 Dec '14
10 Dec '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/5bdce43378bd/
Changeset: 5bdce43378bd
User: guerler
Date: 2014-12-10 06:54:26+00:00
Summary: Ui: Update Fontawesome, ToolForm: Add tool version handling
Affected #: 28 files
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-form.js
--- a/client/galaxy/scripts/mvc/tools/tools-form.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form.js
@@ -48,21 +48,12 @@
// add to main element
$(this.container).append(this.$el);
- // creates a tree/json structure from the input form
- this.tree = new ToolTree(this);
-
- // creates the job handler
- this.job_handler = new ToolJobs(this);
-
- // request history content and build form
- this.content = new ToolContent(this);
-
// build this form
- this._buildForm(options);
+ this._buildForm();
},
- // message
- message: function($el) {
+ // reciept shows the final message usually upon successful job submission
+ reciept: function($el) {
$(this.container).empty();
$(this.container).append($el);
},
@@ -105,6 +96,7 @@
if (this.options.dataset_id) {
model_url += 'dataset_id=' + this.options.dataset_id;
} else {
+ model_url += 'tool_version=' + this.options.version + '&';
var loc = top.location.href;
var pos = loc.indexOf('?');
if (loc.indexOf('tool_id=') != -1 && pos !== -1) {
@@ -112,27 +104,47 @@
}
}
}
-
+
+ // register process
+ var process_id = this.deferred.register();
+
// get initial model
Utils.request({
type : 'GET',
url : model_url,
success : function(response) {
// link model data update options
- self.options = $.extend(self.options, response);
- self.model = response;
- self.inputs = response.inputs;
+ self.options = response;
+
+ // build form
+ self._buildForm();
+
+ // process completed
+ self.deferred.done(process_id);
// log success
console.debug('tools-form::initialize() - Initial tool model ready.');
console.debug(response);
-
- // build form
- self._buildForm();
},
error : function(response) {
+ // process completed
+ self.deferred.done(process_id);
+
+ // log error
console.debug('tools-form::initialize() - Initial tool model request failed.');
console.debug(response);
+
+ // show error
+ var error_message = response.error || 'Uncaught error.';
+ self.modal.show({
+ title : 'Tool cannot be executed',
+ body : error_message,
+ buttons : {
+ 'Close' : function() {
+ self.modal.hide();
+ }
+ }
+ });
}
});
},
@@ -175,10 +187,13 @@
// register process
var process_id = this.deferred.register();
+ // build model url for request
+ var model_url = galaxy_config.root + 'api/tools/' + this.options.id + '/build?tool_version=' + this.options.version;
+
// post job
Utils.request({
type : 'GET',
- url : galaxy_config.root + 'api/tools/' + this.options.id + '/build',
+ url : model_url,
data : current_state,
success : function(response) {
// rebuild form
@@ -219,23 +234,18 @@
var field = self.field_list[input_id];
if (field.update) {
var new_options = [];
- switch (input.type) {
- case 'data':
- new_options = input.options;
- break;
- case 'drill_down':
- new_options = input.options;
- break;
- default:
- for (var i in node.options) {
- var opt = node.options[i];
- if (opt.length > 2) {
- new_options.push({
- 'label': opt[0],
- 'value': opt[1]
- });
- }
+ if ((['data', 'data_collection', 'drill_down']).indexOf(input.type) != -1) {
+ new_options = input.options;
+ } else {
+ for (var i in node.options) {
+ var opt = node.options[i];
+ if (opt.length > 2) {
+ new_options.push({
+ 'label': opt[0],
+ 'value': opt[1]
+ });
}
+ }
}
field.update(new_options);
field.trigger('change');
@@ -247,7 +257,7 @@
},
// builds the tool form
- _buildForm: function(options) {
+ _buildForm: function() {
// link this
var self = this;
@@ -260,12 +270,46 @@
// reset input element list, which contains the dom elements of each input element (includes also the input field)
this.element_list = {};
- // for now the initial tool model is parsed through the mako
- this.model = options;
- this.inputs = options.inputs;
+ // creates a tree/json data structure from the input form
+ this.tree = new ToolTree(this);
+
+ // creates the job handler
+ this.job_handler = new ToolJobs(this);
+
+ // request history content and build form
+ this.content = new ToolContent(this);
+
+ // link model options
+ var options = this.options;
+
+ // button for version selection
+ var versions_button = new Ui.ButtonMenu({
+ icon : 'fa-cubes',
+ title : 'Versions',
+ tooltip : 'Click to see available versions.'
+ });
+ if (options.versions && options.versions.length > 1) {
+ for (var i in options.versions) {
+ versions_button.addMenu({
+ title : options.versions[i],
+ icon : 'fa-cube',
+ onclick : function() {
+ // here we update the tool version (some tools encode the version also in the id)
+ options.id = options.id.replace(options.version, this.title);
+ options.version = this.title;
+
+ // rebuild the model and form
+ self.deferred.reset();
+ self.deferred.execute(function(){self._buildModel()});
+ }
+ });
+ }
+ } else {
+ versions_button.$el.hide();
+ }
// button menu
- var menu = new Ui.ButtonMenu({
+ var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
tooltip : 'Click to see a list of options.'
});
@@ -273,52 +317,52 @@
// configure button selection
if(options.biostar_url) {
// add question option
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-question-circle',
title : 'Question?',
tooltip : 'Ask a question about this tool (Biostar)',
onclick : function() {
- window.open(self.options.biostar_url + '/p/new/post/');
+ window.open(options.biostar_url + '/p/new/post/');
}
});
// create search button
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-search',
title : 'Search',
tooltip : 'Search help for this tool (Biostar)',
onclick : function() {
- window.open(self.options.biostar_url + '/t/' + self.options.id + '/');
+ window.open(options.biostar_url + '/t/' + options.id + '/');
}
});
};
// create share button
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-share',
title : 'Share',
tooltip : 'Share this tool',
onclick : function() {
- prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + self.options.id);
+ prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + options.id);
}
});
// add admin operations
if (this.is_admin) {
// create download button
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-download',
title : 'Download',
tooltip : 'Download this tool',
onclick : function() {
- window.location.href = galaxy_config.root + 'api/tools/' + self.options.id + '/download';
+ window.location.href = galaxy_config.root + 'api/tools/' + options.id + '/download';
}
});
}
// create tool form section
this.section = new ToolSection.View(self, {
- inputs : this.inputs,
+ inputs : options.inputs,
cls : 'ui-table-plain'
});
@@ -332,15 +376,16 @@
// create portlet
this.portlet = new Portlet.View({
icon : 'fa-wrench',
- title : '<b>' + this.model.name + '</b> ' + this.model.description,
+ title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')',
cls : 'ui-portlet-slim',
operations: {
- menu : menu
+ menu : menu_button,
+ versions : versions_button
},
buttons: {
execute : new Ui.Button({
icon : 'fa-check',
- tooltip : 'Execute: ' + self.model.name,
+ tooltip : 'Execute: ' + options.name,
title : 'Execute',
cls : 'btn btn-primary',
floating : 'clear',
@@ -371,6 +416,16 @@
this.$el.append($citations);
}
+ // append message
+ if (options.message) {
+ var message = new Ui.Message({
+ persistent : true,
+ status : 'warning',
+ message : options.message
+ });
+ this.portlet.append(message.$el);
+ }
+
// append tool section
this.portlet.append(this.section.$el);
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-jobs.js
--- a/client/galaxy/scripts/mvc/tools/tools-jobs.js
+++ b/client/galaxy/scripts/mvc/tools/tools-jobs.js
@@ -4,12 +4,8 @@
define(['utils/utils', 'mvc/tools/tools-template'], function(Utils, ToolTemplate) {
return Backbone.Model.extend({
// initialize
- initialize: function(app, options) {
- // link app
+ initialize: function(app) {
this.app = app;
-
- // link options
- this.options = Utils.merge(options, this.optionsDefault);
},
/** Creates and submits a job request to the api
@@ -20,8 +16,9 @@
// create job definition for submission to tools api
var job_def = {
- tool_id : this.app.options.id,
- inputs : this.app.tree.finalize()
+ tool_id : this.app.options.id,
+ tool_version : this.app.options.version,
+ inputs : this.app.tree.finalize()
}
// reset
@@ -46,7 +43,7 @@
data : job_def,
success : function(response) {
self.app.modal.hide();
- self.app.message(ToolTemplate.success(response));
+ self.app.reciept(ToolTemplate.success(response));
self._refreshHdas();
},
error : function(response, response_full) {
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-select-content.js
--- a/client/galaxy/scripts/mvc/tools/tools-select-content.js
+++ b/client/galaxy/scripts/mvc/tools/tools-select-content.js
@@ -38,7 +38,7 @@
// error messages
var extensions = options.extensions.toString();
if (extensions) {
- extensions = extensions.replace(',', ', ');
+ extensions = extensions.replace(/,/g, ', ');
var pos = extensions.lastIndexOf(', ');
if (pos != -1) {
extensions = extensions.substr(0, pos) + ' or ' + extensions.substr(pos+1);
@@ -50,7 +50,7 @@
}
var hdca_error = 'No dataset list available.';
if (extensions) {
- hdca_error = 'No ' + extensions + ' dataset list available.';
+ hdca_error = 'No ' + extensions + ' dataset collection available.';
}
// add single dataset selector
@@ -86,7 +86,7 @@
// add collection selector
if (this.mode == 'single' || this.mode == 'collection') {
- radio_buttons.push({icon: 'fa-folder-o', label : 'List of datasets', value : 'collection' });
+ radio_buttons.push({icon: 'fa-folder-o', label : 'Dataset collection', value : 'collection' });
this.select_collection = new Ui.Select.View({
error_text : hdca_error,
onchange : function() {
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-tree.js
--- a/client/galaxy/scripts/mvc/tools/tools-tree.js
+++ b/client/galaxy/scripts/mvc/tools/tools-tree.js
@@ -8,7 +8,6 @@
return Backbone.Model.extend({
// initialize
initialize: function(app) {
- // link app
this.app = app;
},
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/ui/ui-misc.js
--- a/client/galaxy/scripts/mvc/ui/ui-misc.js
+++ b/client/galaxy/scripts/mvc/ui/ui-misc.js
@@ -248,9 +248,9 @@
var Message = Backbone.View.extend({
// options
optionsDefault: {
- message : '',
- status : 'info',
- persistent : false
+ message : null,
+ status : 'info',
+ persistent : false
},
// initialize
@@ -260,6 +260,11 @@
// create new element
this.setElement('<div></div>');
+
+ // show initial message
+ if (this.options.message) {
+ this.update(this.options);
+ }
},
// update
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 lib/galaxy/webapps/galaxy/api/tools.py
--- a/lib/galaxy/webapps/galaxy/api/tools.py
+++ b/lib/galaxy/webapps/galaxy/api/tools.py
@@ -79,7 +79,12 @@
GET /api/tools/{tool_id}/build
Returns a tool model including dynamic parameters and updated values, repeats block etc.
"""
- tool = self._get_tool( id )
+ tool_id = urllib.unquote_plus( id )
+ tool_version = kwd.get( 'tool_version', None )
+ tool = self.app.toolbox.get_tool( tool_id, tool_version )
+ if not tool:
+ trans.response.status = 500
+ return { 'error': 'Could not find tool with id \'%s\'' % tool_id }
return self._build_dict(trans, tool, kwd)
@_future_expose_api
@@ -128,7 +133,8 @@
# -- Execute tool. --
# Get tool.
- tool = trans.app.toolbox.get_tool( payload[ 'tool_id' ] ) if 'tool_id' in payload else None
+ tool_version = payload.get( 'tool_version', None )
+ tool = trans.app.toolbox.get_tool( payload[ 'tool_id' ] , tool_version ) if 'tool_id' in payload else None
if not tool:
trans.response.status = 404
return { "message": { "type": "error", "text" : trans.app.model.Dataset.conversion_messages.NO_TOOL } }
@@ -219,9 +225,9 @@
#
# -- Helper methods --
#
- def _get_tool( self, id ):
+ def _get_tool( self, id, tool_version=None ):
id = urllib.unquote_plus( id )
- tool = self.app.toolbox.get_tool( id )
+ tool = self.app.toolbox.get_tool( id, tool_version )
if not tool:
raise exceptions.ObjectNotFound("Could not find tool with id '%s'" % id)
return tool
@@ -728,50 +734,58 @@
tool_citations = False
if tool.citations:
tool_citations = True
-
+
+ # get tool versions
+ tool_versions = []
+ tools = self.app.toolbox.get_loaded_tools_by_lineage(tool.id)
+ for t in tools:
+ tool_versions.append(t.version)
+
# add additional properties
tool_model.update({
'help' : tool_help,
'citations' : tool_citations,
'biostar_url' : trans.app.config.biostar_url,
- 'message' : tool_message
+ 'message' : tool_message,
+ 'versions' : tool_versions
})
-
+
+ # check for errors
+ if 'error' in tool_message:
+ return tool_message
+
# return enriched tool model
return tool_model
- def _get_tool_components( self, trans, tool_id, tool_version=None, get_loaded_tools_by_lineage=False, set_selected=False ):
- return self.get_toolbox().get_tool_components( tool_id, tool_version, get_loaded_tools_by_lineage, set_selected )
-
def _compare_tool_version( self, trans, tool, job ):
"""
- Compares a tool version with the tool version from a job (from ToolRunne.
+ Compares a tool version with the tool version from a job (from ToolRunner).
"""
- id = job.tool_id
- version = job.tool_version
+ tool_id = job.tool_id
+ tool_version = job.tool_version
message = ''
try:
- select_field, tools, tool = self._get_tool_components( trans, id, tool_version=version, get_loaded_tools_by_lineage=False, set_selected=True )
+ select_field, tools, tool = self.app.toolbox.get_tool_components( tool_id, tool_version=tool_version, get_loaded_tools_by_lineage=False, set_selected=True )
if tool is None:
trans.response.status = 500
- return { 'error': 'This dataset was created by an obsolete tool (%s). Can\'t re-run.' % id }
- if ( tool.id != id and tool.old_id != id ) or tool.version != version:
- if tool.id == id:
- if version == None:
+ return { 'error': 'This dataset was created by an obsolete tool (%s). Can\'t re-run.' % tool_id }
+ if ( tool.id != tool_id and tool.old_id != tool_id ) or tool.version != tool_version:
+ if tool.id == tool_id:
+ if tool_version == None:
# for some reason jobs don't always keep track of the tool version.
message = ''
else:
- message = 'This job was initially run with tool version "%s", which is currently not available. ' % version
+ message = 'This job was initially run with tool version "%s", which is currently not available. ' % tool_version
if len( tools ) > 1:
message += 'You can re-run the job with the selected tool or choose another derivation of the tool.'
else:
message += 'You can re-run the job with this tool version, which is a derivation of the original tool.'
else:
if len( tools ) > 1:
- message = 'This job was initially run with tool version "%s", which is currently not available. ' % version
+ message = 'This job was initially run with tool version "%s", which is currently not available. ' % tool_version
message += 'You can re-run the job with the selected tool or choose another derivation of the tool.'
else:
- message = 'This job was initially run with tool id "%s", version "%s", which is ' % ( id, version )
+ message = 'This job was initially run with tool id "%s", version "%s", which is ' % ( tool_id, tool_version )
message += 'currently not available. You can re-run the job with this tool, which is a derivation of the original tool.'
except Exception, error:
trans.response.status = 500
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/images/fonts/fontawesome-webfont.eot
Binary file static/images/fonts/fontawesome-webfont.eot has changed
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/images/fonts/fontawesome-webfont.ttf
Binary file static/images/fonts/fontawesome-webfont.ttf has changed
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/images/fonts/fontawesome-webfont.woff
Binary file static/images/fonts/fontawesome-webfont.woff has changed
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -48,21 +48,12 @@
// add to main element
$(this.container).append(this.$el);
- // creates a tree/json structure from the input form
- this.tree = new ToolTree(this);
-
- // creates the job handler
- this.job_handler = new ToolJobs(this);
-
- // request history content and build form
- this.content = new ToolContent(this);
-
// build this form
- this._buildForm(options);
+ this._buildForm();
},
- // message
- message: function($el) {
+ // reciept shows the final message usually upon successful job submission
+ reciept: function($el) {
$(this.container).empty();
$(this.container).append($el);
},
@@ -105,6 +96,7 @@
if (this.options.dataset_id) {
model_url += 'dataset_id=' + this.options.dataset_id;
} else {
+ model_url += 'tool_version=' + this.options.version + '&';
var loc = top.location.href;
var pos = loc.indexOf('?');
if (loc.indexOf('tool_id=') != -1 && pos !== -1) {
@@ -112,27 +104,47 @@
}
}
}
-
+
+ // register process
+ var process_id = this.deferred.register();
+
// get initial model
Utils.request({
type : 'GET',
url : model_url,
success : function(response) {
// link model data update options
- self.options = $.extend(self.options, response);
- self.model = response;
- self.inputs = response.inputs;
+ self.options = response;
+
+ // build form
+ self._buildForm();
+
+ // process completed
+ self.deferred.done(process_id);
// log success
console.debug('tools-form::initialize() - Initial tool model ready.');
console.debug(response);
-
- // build form
- self._buildForm();
},
error : function(response) {
+ // process completed
+ self.deferred.done(process_id);
+
+ // log error
console.debug('tools-form::initialize() - Initial tool model request failed.');
console.debug(response);
+
+ // show error
+ var error_message = response.error || 'Uncaught error.';
+ self.modal.show({
+ title : 'Tool cannot be executed',
+ body : error_message,
+ buttons : {
+ 'Close' : function() {
+ self.modal.hide();
+ }
+ }
+ });
}
});
},
@@ -175,10 +187,13 @@
// register process
var process_id = this.deferred.register();
+ // build model url for request
+ var model_url = galaxy_config.root + 'api/tools/' + this.options.id + '/build?tool_version=' + this.options.version;
+
// post job
Utils.request({
type : 'GET',
- url : galaxy_config.root + 'api/tools/' + this.options.id + '/build',
+ url : model_url,
data : current_state,
success : function(response) {
// rebuild form
@@ -219,23 +234,18 @@
var field = self.field_list[input_id];
if (field.update) {
var new_options = [];
- switch (input.type) {
- case 'data':
- new_options = input.options;
- break;
- case 'drill_down':
- new_options = input.options;
- break;
- default:
- for (var i in node.options) {
- var opt = node.options[i];
- if (opt.length > 2) {
- new_options.push({
- 'label': opt[0],
- 'value': opt[1]
- });
- }
+ if ((['data', 'data_collection', 'drill_down']).indexOf(input.type) != -1) {
+ new_options = input.options;
+ } else {
+ for (var i in node.options) {
+ var opt = node.options[i];
+ if (opt.length > 2) {
+ new_options.push({
+ 'label': opt[0],
+ 'value': opt[1]
+ });
}
+ }
}
field.update(new_options);
field.trigger('change');
@@ -247,7 +257,7 @@
},
// builds the tool form
- _buildForm: function(options) {
+ _buildForm: function() {
// link this
var self = this;
@@ -260,12 +270,46 @@
// reset input element list, which contains the dom elements of each input element (includes also the input field)
this.element_list = {};
- // for now the initial tool model is parsed through the mako
- this.model = options;
- this.inputs = options.inputs;
+ // creates a tree/json data structure from the input form
+ this.tree = new ToolTree(this);
+
+ // creates the job handler
+ this.job_handler = new ToolJobs(this);
+
+ // request history content and build form
+ this.content = new ToolContent(this);
+
+ // link model options
+ var options = this.options;
+
+ // button for version selection
+ var versions_button = new Ui.ButtonMenu({
+ icon : 'fa-cubes',
+ title : 'Versions',
+ tooltip : 'Click to see available versions.'
+ });
+ if (options.versions && options.versions.length > 1) {
+ for (var i in options.versions) {
+ versions_button.addMenu({
+ title : options.versions[i],
+ icon : 'fa-cube',
+ onclick : function() {
+ // here we update the tool version (some tools encode the version also in the id)
+ options.id = options.id.replace(options.version, this.title);
+ options.version = this.title;
+
+ // rebuild the model and form
+ self.deferred.reset();
+ self.deferred.execute(function(){self._buildModel()});
+ }
+ });
+ }
+ } else {
+ versions_button.$el.hide();
+ }
// button menu
- var menu = new Ui.ButtonMenu({
+ var menu_button = new Ui.ButtonMenu({
icon : 'fa-gear',
tooltip : 'Click to see a list of options.'
});
@@ -273,52 +317,52 @@
// configure button selection
if(options.biostar_url) {
// add question option
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-question-circle',
title : 'Question?',
tooltip : 'Ask a question about this tool (Biostar)',
onclick : function() {
- window.open(self.options.biostar_url + '/p/new/post/');
+ window.open(options.biostar_url + '/p/new/post/');
}
});
// create search button
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-search',
title : 'Search',
tooltip : 'Search help for this tool (Biostar)',
onclick : function() {
- window.open(self.options.biostar_url + '/t/' + self.options.id + '/');
+ window.open(options.biostar_url + '/t/' + options.id + '/');
}
});
};
// create share button
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-share',
title : 'Share',
tooltip : 'Share this tool',
onclick : function() {
- prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + self.options.id);
+ prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + options.id);
}
});
// add admin operations
if (this.is_admin) {
// create download button
- menu.addMenu({
+ menu_button.addMenu({
icon : 'fa-download',
title : 'Download',
tooltip : 'Download this tool',
onclick : function() {
- window.location.href = galaxy_config.root + 'api/tools/' + self.options.id + '/download';
+ window.location.href = galaxy_config.root + 'api/tools/' + options.id + '/download';
}
});
}
// create tool form section
this.section = new ToolSection.View(self, {
- inputs : this.inputs,
+ inputs : options.inputs,
cls : 'ui-table-plain'
});
@@ -332,15 +376,16 @@
// create portlet
this.portlet = new Portlet.View({
icon : 'fa-wrench',
- title : '<b>' + this.model.name + '</b> ' + this.model.description,
+ title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')',
cls : 'ui-portlet-slim',
operations: {
- menu : menu
+ menu : menu_button,
+ versions : versions_button
},
buttons: {
execute : new Ui.Button({
icon : 'fa-check',
- tooltip : 'Execute: ' + self.model.name,
+ tooltip : 'Execute: ' + options.name,
title : 'Execute',
cls : 'btn btn-primary',
floating : 'clear',
@@ -371,6 +416,16 @@
this.$el.append($citations);
}
+ // append message
+ if (options.message) {
+ var message = new Ui.Message({
+ persistent : true,
+ status : 'warning',
+ message : options.message
+ });
+ this.portlet.append(message.$el);
+ }
+
// append tool section
this.portlet.append(this.section.$el);
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-jobs.js
--- a/static/scripts/mvc/tools/tools-jobs.js
+++ b/static/scripts/mvc/tools/tools-jobs.js
@@ -4,12 +4,8 @@
define(['utils/utils', 'mvc/tools/tools-template'], function(Utils, ToolTemplate) {
return Backbone.Model.extend({
// initialize
- initialize: function(app, options) {
- // link app
+ initialize: function(app) {
this.app = app;
-
- // link options
- this.options = Utils.merge(options, this.optionsDefault);
},
/** Creates and submits a job request to the api
@@ -20,8 +16,9 @@
// create job definition for submission to tools api
var job_def = {
- tool_id : this.app.options.id,
- inputs : this.app.tree.finalize()
+ tool_id : this.app.options.id,
+ tool_version : this.app.options.version,
+ inputs : this.app.tree.finalize()
}
// reset
@@ -46,7 +43,7 @@
data : job_def,
success : function(response) {
self.app.modal.hide();
- self.app.message(ToolTemplate.success(response));
+ self.app.reciept(ToolTemplate.success(response));
self._refreshHdas();
},
error : function(response, response_full) {
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-select-content.js
--- a/static/scripts/mvc/tools/tools-select-content.js
+++ b/static/scripts/mvc/tools/tools-select-content.js
@@ -38,7 +38,7 @@
// error messages
var extensions = options.extensions.toString();
if (extensions) {
- extensions = extensions.replace(',', ', ');
+ extensions = extensions.replace(/,/g, ', ');
var pos = extensions.lastIndexOf(', ');
if (pos != -1) {
extensions = extensions.substr(0, pos) + ' or ' + extensions.substr(pos+1);
@@ -50,7 +50,7 @@
}
var hdca_error = 'No dataset list available.';
if (extensions) {
- hdca_error = 'No ' + extensions + ' dataset list available.';
+ hdca_error = 'No ' + extensions + ' dataset collection available.';
}
// add single dataset selector
@@ -86,7 +86,7 @@
// add collection selector
if (this.mode == 'single' || this.mode == 'collection') {
- radio_buttons.push({icon: 'fa-folder-o', label : 'List of datasets', value : 'collection' });
+ radio_buttons.push({icon: 'fa-folder-o', label : 'Dataset collection', value : 'collection' });
this.select_collection = new Ui.Select.View({
error_text : hdca_error,
onchange : function() {
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-tree.js
--- a/static/scripts/mvc/tools/tools-tree.js
+++ b/static/scripts/mvc/tools/tools-tree.js
@@ -8,7 +8,6 @@
return Backbone.Model.extend({
// initialize
initialize: function(app) {
- // link app
this.app = app;
},
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/ui/ui-misc.js
--- a/static/scripts/mvc/ui/ui-misc.js
+++ b/static/scripts/mvc/ui/ui-misc.js
@@ -248,9 +248,9 @@
var Message = Backbone.View.extend({
// options
optionsDefault: {
- message : '',
- status : 'info',
- persistent : false
+ message : null,
+ status : 'info',
+ persistent : false
},
// initialize
@@ -260,6 +260,11 @@
// create new element
this.setElement('<div></div>');
+
+ // show initial message
+ if (this.options.message) {
+ this.update(this.options);
+ }
},
// update
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);this._buildForm(o)},message:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{var p=top.location.href;var q=p.indexOf("?");if(p.indexOf("tool_id=")!=-1&&q!==-1){o+=p.slice(q+1)}}}i.request({type:"GET",url:o,success:function(r){n.options=$.extend(n.options,r);n.model=r;n.inputs=r.inputs;console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(r);n._buildForm()},error:function(r){console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(r)}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(r){if(r.values.length>0&&r.values[0]&&r.values[0].src==="hda"){return n.content.get({id:r.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function q(u){for(var s in n.input_list){var t=n.field_list[s];var r=n.input_list[s];if(r.is_dynamic&&t.wait&&t.unwait){if(u){t.wait()}else{t.unwait()}}}}q(true);var p=this.deferred.register();i.request({type:"GET",url:galaxy_config.root+"api/tools/"+this.options.id+"/build",data:o,success:function(r){n._updateForm(r);q(false);n.deferred.done(p);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(r)},error:function(r){n.deferred.done(p);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(r)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];switch(p.type){case"data":t=p.options;break;case"drill_down":t=p.options;break;default:for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(p){var o=this;this.field_list={};this.input_list={};this.element_list={};this.model=p;this.inputs=p.inputs;var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to see a list of options."});if(p.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(o.options.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(o.options.biostar_url+"/t/"+o.options.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+o.options.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+o.options.id+"/download"}})}this.section=new l.View(o,{inputs:this.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+this.model.name+"</b> "+this.model.description,cls:"ui-portlet-slim",operations:{menu:s},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+o.model.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){o.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(p.help!=""){this.$el.append(d.help(p.help))}if(p.citations){var r=$("<div/>");var n=new k.ToolCitationCollection();n.tool_id=p.id;var q=new a.CitationListView({el:r,collection:n});q.render();n.fetch();this.$el.append(r)}this.portlet.append(this.section.$el);this.rebuild()}});return{View:b}});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var t=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var v=this.options;var o=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to see available versions."});if(v.versions&&v.versions.length>1){for(var q in v.versions){o.addMenu({title:v.versions[q],icon:"fa-cube",onclick:function(){v.id=v.id.replace(v.version,this.title);v.version=this.title;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}else{o.$el.hide()}var r=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to see a list of options."});if(v.biostar_url){r.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/p/new/post/")}});r.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/t/"+v.id+"/")}})}r.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+v.id)}});if(this.is_admin){r.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+v.id+"/download"}})}this.section=new l.View(t,{inputs:v.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+v.name+"</b> "+v.description+" (Version "+v.version+")",cls:"ui-portlet-slim",operations:{menu:r,versions:o},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+v.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){t.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(v.help!=""){this.$el.append(d.help(v.help))}if(v.citations){var s=$("<div/>");var n=new k.ToolCitationCollection();n.tool_id=v.id;var p=new a.CitationListView({el:s,collection:n});p.render();n.fetch();this.$el.append(s)}if(v.message){var u=new m.Message({persistent:true,status:"warning",message:v.message});this.portlet.append(u.$el)}this.portlet.append(this.section.$el);this.rebuild()}});return{View:b}});
\ No newline at end of file
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/tools/tools-jobs.js
--- a/static/scripts/packed/mvc/tools/tools-jobs.js
+++ b/static/scripts/packed/mvc/tools/tools-jobs.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/tools/tools-template"],function(b,a){return Backbone.Model.extend({initialize:function(d,c){this.app=d;this.options=b.merge(c,this.optionsDefault)},submit:function(){var c=this;var d={tool_id:this.app.options.id,inputs:this.app.tree.finalize()};this.app.reset();if(!this._validation(d)){console.debug("tools-jobs::submit - Submission canceled. Validation failed.");return}console.debug(d);this.app.modal.show({title:"Please wait...",body:"progress",closing_events:true,buttons:{Close:function(){c.app.modal.hide()}}});b.request({type:"POST",url:galaxy_config.root+"api/tools",data:d,success:function(e){c.app.modal.hide();c.app.message(a.success(e));c._refreshHdas()},error:function(e,g){c.app.modal.hide();if(e&&e.message&&e.message.data){var h=c.app.tree.matchResponse(e.message.data);for(var f in h){c._foundError(f,h[f]);break}}else{console.debug(e);c.app.modal.show({title:"Job submission failed",body:a.error(d),buttons:{Close:function(){c.app.modal.hide()}}})}}})},_foundError:function(c,d){var e=this.app.element_list[c];e.error(d||"Please verify this parameter.");$(this.app.container).animate({scrollTop:e.$el.offset().top-20},500)},_validation:function(h){var d=h.inputs;var m=-1;var i=null;for(var k in d){var f=d[k];var l=this.app.tree.match(k);var e=this.app.field_list[l];var j=this.app.input_list[l];if(!l||!j||!e){console.debug("tools-jobs::_validation - Retrieving input objects failed.");continue}if(!j.optional&&e.validate&&!e.validate()){this._foundError(l);return false}if(f&&f.batch){var g=f.values.length;var c=null;if(g>0){c=f.values[0]&&f.values[0].src}if(c){if(i===null){i=c}else{if(i!==c){this._foundError(l,"Please select either dataset or dataset list fields for all batch mode fields.");return false}}}if(m===-1){m=g}else{if(m!==g){this._foundError(l,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+g+"</b> selection(s) while a previous field contains <b>"+m+"</b>.");return false}}}}return true},_refreshHdas:function(){if(parent.Galaxy&&parent.Galaxy.currHistoryPanel){parent.Galaxy.currHistoryPanel.refreshContents()}}})});
\ No newline at end of file
+define(["utils/utils","mvc/tools/tools-template"],function(b,a){return Backbone.Model.extend({initialize:function(c){this.app=c},submit:function(){var c=this;var d={tool_id:this.app.options.id,tool_version:this.app.options.version,inputs:this.app.tree.finalize()};this.app.reset();if(!this._validation(d)){console.debug("tools-jobs::submit - Submission canceled. Validation failed.");return}console.debug(d);this.app.modal.show({title:"Please wait...",body:"progress",closing_events:true,buttons:{Close:function(){c.app.modal.hide()}}});b.request({type:"POST",url:galaxy_config.root+"api/tools",data:d,success:function(e){c.app.modal.hide();c.app.reciept(a.success(e));c._refreshHdas()},error:function(e,g){c.app.modal.hide();if(e&&e.message&&e.message.data){var h=c.app.tree.matchResponse(e.message.data);for(var f in h){c._foundError(f,h[f]);break}}else{console.debug(e);c.app.modal.show({title:"Job submission failed",body:a.error(d),buttons:{Close:function(){c.app.modal.hide()}}})}}})},_foundError:function(c,d){var e=this.app.element_list[c];e.error(d||"Please verify this parameter.");$(this.app.container).animate({scrollTop:e.$el.offset().top-20},500)},_validation:function(h){var d=h.inputs;var m=-1;var i=null;for(var k in d){var f=d[k];var l=this.app.tree.match(k);var e=this.app.field_list[l];var j=this.app.input_list[l];if(!l||!j||!e){console.debug("tools-jobs::_validation - Retrieving input objects failed.");continue}if(!j.optional&&e.validate&&!e.validate()){this._foundError(l);return false}if(f&&f.batch){var g=f.values.length;var c=null;if(g>0){c=f.values[0]&&f.values[0].src}if(c){if(i===null){i=c}else{if(i!==c){this._foundError(l,"Please select either dataset or dataset list fields for all batch mode fields.");return false}}}if(m===-1){m=g}else{if(m!==g){this._foundError(l,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+g+"</b> selection(s) while a previous field contains <b>"+m+"</b>.");return false}}}}return true},_refreshHdas:function(){if(parent.Galaxy&&parent.Galaxy.currHistoryPanel){parent.Galaxy.currHistoryPanel.refreshContents()}}})});
\ No newline at end of file
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/tools/tools-select-content.js
--- a/static/scripts/packed/mvc/tools/tools-select-content.js
+++ b/static/scripts/packed/mvc/tools/tools-select-content.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(f,o){this.app=f;this.options=o;var n=this;this.setElement("<div/>");this.list={};var m=[];if(o.type=="data_collection"){this.mode="collection"}else{if(o.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var j=o.extensions.toString();if(j){j=j.replace(",",", ");var k=j.lastIndexOf(", ");if(k!=-1){j=j.substr(0,k)+" or "+j.substr(k+1)}}var h="No dataset available.";if(j){h="No "+j+" dataset available."}var l="No dataset list available.";if(j){l="No "+j+" dataset list available."}if(this.mode=="single"){m.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({error_text:h,onchange:function(){n.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){m.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:h,onchange:function(){n.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){m.push({icon:"fa-folder-o",label:"List of datasets",value:"collection"});this.select_collection=new e.Select.View({error_text:l,onchange:function(){n.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:m,onchange:function(i){n.current=i;n.refresh();n.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(c.wrap(this.button_type.$el))}for(var g in this.list){this.$el.append(this.list[g].field.$el)}this.$el.append(this.$batch);this.update(o.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(o.onchange){o.onchange(n.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(m){if(m&&m.values){try{var l=[];for(var h in m.values){l.push(m.values[h].id)}if(m&&m.values.length>0&&m.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}this.refresh();var g=this._select();if(!g.validate()){g.value(g.first())}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var h in j){f.values.push({id:j[h],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(f,o){this.app=f;this.options=o;var n=this;this.setElement("<div/>");this.list={};var m=[];if(o.type=="data_collection"){this.mode="collection"}else{if(o.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var j=o.extensions.toString();if(j){j=j.replace(/,/g,", ");var k=j.lastIndexOf(", ");if(k!=-1){j=j.substr(0,k)+" or "+j.substr(k+1)}}var h="No dataset available.";if(j){h="No "+j+" dataset available."}var l="No dataset list available.";if(j){l="No "+j+" dataset collection available."}if(this.mode=="single"){m.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({error_text:h,onchange:function(){n.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){m.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:h,onchange:function(){n.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){m.push({icon:"fa-folder-o",label:"Dataset collection",value:"collection"});this.select_collection=new e.Select.View({error_text:l,onchange:function(){n.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:m,onchange:function(i){n.current=i;n.refresh();n.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(c.wrap(this.button_type.$el))}for(var g in this.list){this.$el.append(this.list[g].field.$el)}this.$el.append(this.$batch);this.update(o.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(o.onchange){o.onchange(n.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(m){if(m&&m.values){try{var l=[];for(var h in m.values){l.push(m.values[h].id)}if(m&&m.values.length>0&&m.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}this.refresh();var g=this._select();if(!g.validate()){g.value(g.first())}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var h in j){f.values.push({id:j[h],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/ui/ui-misc.js
--- a/static/scripts/packed/mvc/ui/ui-misc.js
+++ b/static/scripts/packed/mvc/ui/ui-misc.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>")},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(!s.persistent){var r=this;window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(!s.persistent){var r=this;window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}});
\ No newline at end of file
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -762,7 +762,7 @@
.nav-tabs{margin-bottom:15px}
a{text-decoration:underline}
label{font-weight:normal}
-@font-face{font-family:'FontAwesome';src:url('../images/fonts/fontawesome-webfont.eot?v=4.0.1');src:url('../images/fonts/fontawesome-webfont.eot?#iefix&v=4.0.1') format('embedded-opentype'),url('../images/fonts/fontawesome-webfont.woff?v=4.0.1') format('woff'),url('../images/fonts/fontawesome-webfont.ttf?v=4.0.1') format('truetype'),url('../images/fonts/fontawesome-webfont.svg?v=4.0.1#fontawesomeregular') format('svg');font-weight:normal;font-style:normal}.fa{display:inline-block;font-family:FontAwesome;font-style:normal;font-weight:normal;line-height:1;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}
+@font-face{font-family:'FontAwesome';src:url('../images/fonts/fontawesome-webfont.eot?v=4.2.0');src:url('../images/fonts/fontawesome-webfont.eot?#iefix&v=4.2.0') format('embedded-opentype'),url('../images/fonts/fontawesome-webfont.woff?v=4.2.0') format('woff'),url('../images/fonts/fontawesome-webfont.ttf?v=4.2.0') format('truetype'),url('../images/fonts/fontawesome-webfont.svg?v=4.2.0#fontawesomeregular') format('svg');font-weight:normal;font-style:normal}.fa{display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}
.fa-lg{font-size:1.3333333333333333em;line-height:.75em;vertical-align:-15%}
.fa-2x{font-size:2em}
.fa-3x{font-size:3em}
@@ -776,12 +776,13 @@
.pull-left{float:left}
.fa.pull-left{margin-right:.3em}
.fa.pull-right{margin-left:.3em}
-.fa-spin{-webkit-animation:spin 2s infinite linear;-moz-animation:spin 2s infinite linear;-o-animation:spin 2s infinite linear;animation:spin 2s infinite linear}
-@-moz-keyframes spin{0%{-moz-transform:rotate(0deg)} 100%{-moz-transform:rotate(359deg)}}@-webkit-keyframes spin{0%{-webkit-transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg)}}@-o-keyframes spin{0%{-o-transform:rotate(0deg)} 100%{-o-transform:rotate(359deg)}}@-ms-keyframes spin{0%{-ms-transform:rotate(0deg)} 100%{-ms-transform:rotate(359deg)}}@keyframes spin{0%{transform:rotate(0deg)} 100%{transform:rotate(359deg)}}.fa-rotate-90{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=1);-webkit-transform:rotate(90deg);-moz-transform:rotate(90deg);-ms-transform:rotate(90deg);-o-transform:rotate(90deg);transform:rotate(90deg)}
-.fa-rotate-180{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2);-webkit-transform:rotate(180deg);-moz-transform:rotate(180deg);-ms-transform:rotate(180deg);-o-transform:rotate(180deg);transform:rotate(180deg)}
-.fa-rotate-270{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=3);-webkit-transform:rotate(270deg);-moz-transform:rotate(270deg);-ms-transform:rotate(270deg);-o-transform:rotate(270deg);transform:rotate(270deg)}
-.fa-flip-horizontal{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=0, mirror=1);-webkit-transform:scale(-1, 1);-moz-transform:scale(-1, 1);-ms-transform:scale(-1, 1);-o-transform:scale(-1, 1);transform:scale(-1, 1)}
-.fa-flip-vertical{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2, mirror=1);-webkit-transform:scale(1, -1);-moz-transform:scale(1, -1);-ms-transform:scale(1, -1);-o-transform:scale(1, -1);transform:scale(1, -1)}
+.fa-spin{-webkit-animation:fa-spin 2s infinite linear;animation:fa-spin 2s infinite linear}
+@-webkit-keyframes fa-spin{0%{-webkit-transform:rotate(0deg);transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg);transform:rotate(359deg)}}@keyframes fa-spin{0%{-webkit-transform:rotate(0deg);transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg);transform:rotate(359deg)}}.fa-rotate-90{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=1);-webkit-transform:rotate(90deg);-ms-transform:rotate(90deg);transform:rotate(90deg)}
+.fa-rotate-180{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2);-webkit-transform:rotate(180deg);-ms-transform:rotate(180deg);transform:rotate(180deg)}
+.fa-rotate-270{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=3);-webkit-transform:rotate(270deg);-ms-transform:rotate(270deg);transform:rotate(270deg)}
+.fa-flip-horizontal{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=0, mirror=1);-webkit-transform:scale(-1, 1);-ms-transform:scale(-1, 1);transform:scale(-1, 1)}
+.fa-flip-vertical{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2, mirror=1);-webkit-transform:scale(1, -1);-ms-transform:scale(1, -1);transform:scale(1, -1)}
+:root .fa-rotate-90,:root .fa-rotate-180,:root .fa-rotate-270,:root .fa-flip-horizontal,:root .fa-flip-vertical{filter:none}
.fa-stack{position:relative;display:inline-block;width:2em;height:2em;line-height:2em;vertical-align:middle}
.fa-stack-1x,.fa-stack-2x{position:absolute;left:0;width:100%;text-align:center}
.fa-stack-1x{line-height:inherit}
@@ -800,7 +801,7 @@
.fa-th:before{content:"\f00a"}
.fa-th-list:before{content:"\f00b"}
.fa-check:before{content:"\f00c"}
-.fa-times:before{content:"\f00d"}
+.fa-remove:before,.fa-close:before,.fa-times:before{content:"\f00d"}
.fa-search-plus:before{content:"\f00e"}
.fa-search-minus:before{content:"\f010"}
.fa-power-off:before{content:"\f011"}
@@ -846,7 +847,7 @@
.fa-dedent:before,.fa-outdent:before{content:"\f03b"}
.fa-indent:before{content:"\f03c"}
.fa-video-camera:before{content:"\f03d"}
-.fa-picture-o:before{content:"\f03e"}
+.fa-photo:before,.fa-image:before,.fa-picture-o:before{content:"\f03e"}
.fa-pencil:before{content:"\f040"}
.fa-map-marker:before{content:"\f041"}
.fa-adjust:before{content:"\f042"}
@@ -854,7 +855,7 @@
.fa-edit:before,.fa-pencil-square-o:before{content:"\f044"}
.fa-share-square-o:before{content:"\f045"}
.fa-check-square-o:before{content:"\f046"}
-.fa-move:before{content:"\f047"}
+.fa-arrows:before{content:"\f047"}
.fa-step-backward:before{content:"\f048"}
.fa-fast-backward:before{content:"\f049"}
.fa-backward:before{content:"\f04a"}
@@ -882,8 +883,8 @@
.fa-arrow-up:before{content:"\f062"}
.fa-arrow-down:before{content:"\f063"}
.fa-mail-forward:before,.fa-share:before{content:"\f064"}
-.fa-resize-full:before{content:"\f065"}
-.fa-resize-small:before{content:"\f066"}
+.fa-expand:before{content:"\f065"}
+.fa-compress:before{content:"\f066"}
.fa-plus:before{content:"\f067"}
.fa-minus:before{content:"\f068"}
.fa-asterisk:before{content:"\f069"}
@@ -905,9 +906,9 @@
.fa-shopping-cart:before{content:"\f07a"}
.fa-folder:before{content:"\f07b"}
.fa-folder-open:before{content:"\f07c"}
-.fa-resize-vertical:before{content:"\f07d"}
-.fa-resize-horizontal:before{content:"\f07e"}
-.fa-bar-chart-o:before{content:"\f080"}
+.fa-arrows-v:before{content:"\f07d"}
+.fa-arrows-h:before{content:"\f07e"}
+.fa-bar-chart-o:before,.fa-bar-chart:before{content:"\f080"}
.fa-twitter-square:before{content:"\f081"}
.fa-facebook-square:before{content:"\f082"}
.fa-camera-retro:before{content:"\f083"}
@@ -954,8 +955,8 @@
.fa-tasks:before{content:"\f0ae"}
.fa-filter:before{content:"\f0b0"}
.fa-briefcase:before{content:"\f0b1"}
-.fa-fullscreen:before{content:"\f0b2"}
-.fa-group:before{content:"\f0c0"}
+.fa-arrows-alt:before{content:"\f0b2"}
+.fa-group:before,.fa-users:before{content:"\f0c0"}
.fa-chain:before,.fa-link:before{content:"\f0c1"}
.fa-cloud:before{content:"\f0c2"}
.fa-flask:before{content:"\f0c3"}
@@ -964,7 +965,7 @@
.fa-paperclip:before{content:"\f0c6"}
.fa-save:before,.fa-floppy-o:before{content:"\f0c7"}
.fa-square:before{content:"\f0c8"}
-.fa-reorder:before{content:"\f0c9"}
+.fa-navicon:before,.fa-reorder:before,.fa-bars:before{content:"\f0c9"}
.fa-list-ul:before{content:"\f0ca"}
.fa-list-ol:before{content:"\f0cb"}
.fa-strikethrough:before{content:"\f0cc"}
@@ -983,8 +984,8 @@
.fa-caret-right:before{content:"\f0da"}
.fa-columns:before{content:"\f0db"}
.fa-unsorted:before,.fa-sort:before{content:"\f0dc"}
-.fa-sort-down:before,.fa-sort-asc:before{content:"\f0dd"}
-.fa-sort-up:before,.fa-sort-desc:before{content:"\f0de"}
+.fa-sort-down:before,.fa-sort-desc:before{content:"\f0dd"}
+.fa-sort-up:before,.fa-sort-asc:before{content:"\f0de"}
.fa-envelope:before{content:"\f0e0"}
.fa-linkedin:before{content:"\f0e1"}
.fa-rotate-left:before,.fa-undo:before{content:"\f0e2"}
@@ -1007,8 +1008,8 @@
.fa-coffee:before{content:"\f0f4"}
.fa-cutlery:before{content:"\f0f5"}
.fa-file-text-o:before{content:"\f0f6"}
-.fa-building:before{content:"\f0f7"}
-.fa-hospital:before{content:"\f0f8"}
+.fa-building-o:before{content:"\f0f7"}
+.fa-hospital-o:before{content:"\f0f8"}
.fa-ambulance:before{content:"\f0f9"}
.fa-medkit:before{content:"\f0fa"}
.fa-fighter-jet:before{content:"\f0fb"}
@@ -1036,8 +1037,6 @@
.fa-github-alt:before{content:"\f113"}
.fa-folder-o:before{content:"\f114"}
.fa-folder-open-o:before{content:"\f115"}
-.fa-expand-o:before{content:"\f116"}
-.fa-collapse-o:before{content:"\f117"}
.fa-smile-o:before{content:"\f118"}
.fa-frown-o:before{content:"\f119"}
.fa-meh-o:before{content:"\f11a"}
@@ -1047,8 +1046,7 @@
.fa-flag-checkered:before{content:"\f11e"}
.fa-terminal:before{content:"\f120"}
.fa-code:before{content:"\f121"}
-.fa-reply-all:before{content:"\f122"}
-.fa-mail-reply-all:before{content:"\f122"}
+.fa-mail-reply-all:before,.fa-reply-all:before{content:"\f122"}
.fa-star-half-empty:before,.fa-star-half-full:before,.fa-star-half-o:before{content:"\f123"}
.fa-location-arrow:before{content:"\f124"}
.fa-crop:before{content:"\f125"}
@@ -1075,10 +1073,10 @@
.fa-html5:before{content:"\f13b"}
.fa-css3:before{content:"\f13c"}
.fa-anchor:before{content:"\f13d"}
-.fa-unlock-o:before{content:"\f13e"}
+.fa-unlock-alt:before{content:"\f13e"}
.fa-bullseye:before{content:"\f140"}
-.fa-ellipsis-horizontal:before{content:"\f141"}
-.fa-ellipsis-vertical:before{content:"\f142"}
+.fa-ellipsis-h:before{content:"\f141"}
+.fa-ellipsis-v:before{content:"\f142"}
.fa-rss-square:before{content:"\f143"}
.fa-play-circle:before{content:"\f144"}
.fa-ticket:before{content:"\f145"}
@@ -1157,6 +1155,118 @@
.fa-wheelchair:before{content:"\f193"}
.fa-vimeo-square:before{content:"\f194"}
.fa-turkish-lira:before,.fa-try:before{content:"\f195"}
+.fa-plus-square-o:before{content:"\f196"}
+.fa-space-shuttle:before{content:"\f197"}
+.fa-slack:before{content:"\f198"}
+.fa-envelope-square:before{content:"\f199"}
+.fa-wordpress:before{content:"\f19a"}
+.fa-openid:before{content:"\f19b"}
+.fa-institution:before,.fa-bank:before,.fa-university:before{content:"\f19c"}
+.fa-mortar-board:before,.fa-graduation-cap:before{content:"\f19d"}
+.fa-yahoo:before{content:"\f19e"}
+.fa-google:before{content:"\f1a0"}
+.fa-reddit:before{content:"\f1a1"}
+.fa-reddit-square:before{content:"\f1a2"}
+.fa-stumbleupon-circle:before{content:"\f1a3"}
+.fa-stumbleupon:before{content:"\f1a4"}
+.fa-delicious:before{content:"\f1a5"}
+.fa-digg:before{content:"\f1a6"}
+.fa-pied-piper:before{content:"\f1a7"}
+.fa-pied-piper-alt:before{content:"\f1a8"}
+.fa-drupal:before{content:"\f1a9"}
+.fa-joomla:before{content:"\f1aa"}
+.fa-language:before{content:"\f1ab"}
+.fa-fax:before{content:"\f1ac"}
+.fa-building:before{content:"\f1ad"}
+.fa-child:before{content:"\f1ae"}
+.fa-paw:before{content:"\f1b0"}
+.fa-spoon:before{content:"\f1b1"}
+.fa-cube:before{content:"\f1b2"}
+.fa-cubes:before{content:"\f1b3"}
+.fa-behance:before{content:"\f1b4"}
+.fa-behance-square:before{content:"\f1b5"}
+.fa-steam:before{content:"\f1b6"}
+.fa-steam-square:before{content:"\f1b7"}
+.fa-recycle:before{content:"\f1b8"}
+.fa-automobile:before,.fa-car:before{content:"\f1b9"}
+.fa-cab:before,.fa-taxi:before{content:"\f1ba"}
+.fa-tree:before{content:"\f1bb"}
+.fa-spotify:before{content:"\f1bc"}
+.fa-deviantart:before{content:"\f1bd"}
+.fa-soundcloud:before{content:"\f1be"}
+.fa-database:before{content:"\f1c0"}
+.fa-file-pdf-o:before{content:"\f1c1"}
+.fa-file-word-o:before{content:"\f1c2"}
+.fa-file-excel-o:before{content:"\f1c3"}
+.fa-file-powerpoint-o:before{content:"\f1c4"}
+.fa-file-photo-o:before,.fa-file-picture-o:before,.fa-file-image-o:before{content:"\f1c5"}
+.fa-file-zip-o:before,.fa-file-archive-o:before{content:"\f1c6"}
+.fa-file-sound-o:before,.fa-file-audio-o:before{content:"\f1c7"}
+.fa-file-movie-o:before,.fa-file-video-o:before{content:"\f1c8"}
+.fa-file-code-o:before{content:"\f1c9"}
+.fa-vine:before{content:"\f1ca"}
+.fa-codepen:before{content:"\f1cb"}
+.fa-jsfiddle:before{content:"\f1cc"}
+.fa-life-bouy:before,.fa-life-buoy:before,.fa-life-saver:before,.fa-support:before,.fa-life-ring:before{content:"\f1cd"}
+.fa-circle-o-notch:before{content:"\f1ce"}
+.fa-ra:before,.fa-rebel:before{content:"\f1d0"}
+.fa-ge:before,.fa-empire:before{content:"\f1d1"}
+.fa-git-square:before{content:"\f1d2"}
+.fa-git:before{content:"\f1d3"}
+.fa-hacker-news:before{content:"\f1d4"}
+.fa-tencent-weibo:before{content:"\f1d5"}
+.fa-qq:before{content:"\f1d6"}
+.fa-wechat:before,.fa-weixin:before{content:"\f1d7"}
+.fa-send:before,.fa-paper-plane:before{content:"\f1d8"}
+.fa-send-o:before,.fa-paper-plane-o:before{content:"\f1d9"}
+.fa-history:before{content:"\f1da"}
+.fa-circle-thin:before{content:"\f1db"}
+.fa-header:before{content:"\f1dc"}
+.fa-paragraph:before{content:"\f1dd"}
+.fa-sliders:before{content:"\f1de"}
+.fa-share-alt:before{content:"\f1e0"}
+.fa-share-alt-square:before{content:"\f1e1"}
+.fa-bomb:before{content:"\f1e2"}
+.fa-soccer-ball-o:before,.fa-futbol-o:before{content:"\f1e3"}
+.fa-tty:before{content:"\f1e4"}
+.fa-binoculars:before{content:"\f1e5"}
+.fa-plug:before{content:"\f1e6"}
+.fa-slideshare:before{content:"\f1e7"}
+.fa-twitch:before{content:"\f1e8"}
+.fa-yelp:before{content:"\f1e9"}
+.fa-newspaper-o:before{content:"\f1ea"}
+.fa-wifi:before{content:"\f1eb"}
+.fa-calculator:before{content:"\f1ec"}
+.fa-paypal:before{content:"\f1ed"}
+.fa-google-wallet:before{content:"\f1ee"}
+.fa-cc-visa:before{content:"\f1f0"}
+.fa-cc-mastercard:before{content:"\f1f1"}
+.fa-cc-discover:before{content:"\f1f2"}
+.fa-cc-amex:before{content:"\f1f3"}
+.fa-cc-paypal:before{content:"\f1f4"}
+.fa-cc-stripe:before{content:"\f1f5"}
+.fa-bell-slash:before{content:"\f1f6"}
+.fa-bell-slash-o:before{content:"\f1f7"}
+.fa-trash:before{content:"\f1f8"}
+.fa-copyright:before{content:"\f1f9"}
+.fa-at:before{content:"\f1fa"}
+.fa-eyedropper:before{content:"\f1fb"}
+.fa-paint-brush:before{content:"\f1fc"}
+.fa-birthday-cake:before{content:"\f1fd"}
+.fa-area-chart:before{content:"\f1fe"}
+.fa-pie-chart:before{content:"\f200"}
+.fa-line-chart:before{content:"\f201"}
+.fa-lastfm:before{content:"\f202"}
+.fa-lastfm-square:before{content:"\f203"}
+.fa-toggle-off:before{content:"\f204"}
+.fa-toggle-on:before{content:"\f205"}
+.fa-bicycle:before{content:"\f206"}
+.fa-bus:before{content:"\f207"}
+.fa-ioxhost:before{content:"\f208"}
+.fa-angellist:before{content:"\f209"}
+.fa-cc:before{content:"\f20a"}
+.fa-shekel:before,.fa-sheqel:before,.fa-ils:before{content:"\f20b"}
+.fa-meanpath:before{content:"\f20c"}
.fa-icon{font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}
.select2-container{margin:0;position:relative;display:inline-block;zoom:1;*display:inline;vertical-align:middle}
.select2-container,.select2-drop,.select2-search,.select2-search input{-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box;}
@@ -1610,7 +1720,7 @@
.unified-panel-footer{-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;position:absolute;bottom:0;height:25px;line-height:25px;width:100%;z-index:1000;border-top:solid #999 1px;background:#eee;color:#555}.unified-panel-footer a{color:#555}
.unified-panel-footer .drag{position:absolute;top:0;right:0;padding:0 5px;text-align:center;height:25px;width:20px;background-image:url(../images/visualization/draggable_horizontal.png);background-repeat:no-repeat;background-position:50% 50%;cursor:w-resize}
#right>.unified-panel-footer .drag{left:0}
-.panel-collapse{-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;position:absolute;width:100%;z-index:1000;background:#eee;color:#555;font-size:1.3333333333333333em;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;z-index:201;display:block;position:fixed;left:0;top:inherit;bottom:0;padding:0 5px;text-align:center;height:25px;line-height:25px;width:20px;background:none;border-right:solid #999 1px;border-top:solid #999 1px;background:#eee}.panel-collapse a{color:#555}
+.panel-collapse{-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;position:absolute;width:100%;z-index:1000;background:#eee;color:#555;font-size:1.3333333333333333em;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;z-index:201;display:block;position:fixed;left:0;top:inherit;bottom:0;padding:0 5px;text-align:center;height:25px;line-height:25px;width:20px;background:none;border-right:solid #999 1px;border-top:solid #999 1px;background:#eee}.panel-collapse a{color:#555}
.panel-collapse .drag{position:absolute;top:0;right:0;padding:0 5px;text-align:center;height:25px;width:20px;background-image:url(../images/visualization/draggable_horizontal.png);background-repeat:no-repeat;background-position:50% 50%;cursor:w-resize}
.panel-collapse:before{content:'\f053'}
.panel-collapse.hidden:before{content:'\f054'}
@@ -1687,7 +1797,7 @@
.search-query{display:inline-block;padding:4px;font-size:12px;line-height:1.428571429;color:#555;border:1px solid #aaa;padding-left:14px !important;padding-right:14px;margin-bottom:0;-webkit-border-radius:14px;-moz-border-radius:14px;border-radius:14px;max-width:auto}
.search-query:focus{border-color:rgba(24,132,218,0.8);-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);outline:0;outline:thin dotted \9;}
.search-spinner{position:absolute;display:none;right:6px;top:9px}
-#search-clear-btn{position:absolute;right:6px;top:5px;display:block;font-size:1.4em;text-decoration:none;color:#888;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}#search-clear-btn:before{content:"\f057"}
+#search-clear-btn{position:absolute;right:6px;top:9px;display:block;font-size:1.4em !important;text-decoration:none;color:#888;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}#search-clear-btn:before{content:"\f057"}
.errormessagelarge,.warningmessagelarge,.donemessagelarge,.infomessagelarge{padding:15px;margin-bottom:17px;border:1px solid transparent;border-radius:3px;min-height:36px;padding-left:52px;background-image:url(error_large.png);background-repeat:no-repeat;background-position:10px 8px}.errormessagelarge h4,.warningmessagelarge h4,.donemessagelarge h4,.infomessagelarge h4{margin-top:0;color:inherit}
.errormessagelarge .alert-link,.warningmessagelarge .alert-link,.donemessagelarge .alert-link,.infomessagelarge .alert-link{font-weight:bold}
.errormessagelarge>p,.warningmessagelarge>p,.donemessagelarge>p,.infomessagelarge>p,.errormessagelarge>ul,.warningmessagelarge>ul,.donemessagelarge>ul,.infomessagelarge>ul{margin-bottom:0}
@@ -1878,7 +1988,7 @@
.list-item .details .list-panel{margin-top:8px;border-radius:3px;background:white;padding:4px}.list-item .details .list-panel .list-items{border:1px solid #bfbfbf;border-radius:3px}.list-item .details .list-panel .list-items .list-item:first-child{border-top-width:0px;border-radius:3px 3px 0px 0px}
.list-item .details .list-panel .list-items .list-item:last-child{border-bottom-width:0px;border-radius:0px 0px 3px 3px}
.history-panel-header .panel-header-button{display:inline-block;height:22px;width:22px;text-align:center;line-height:19px;font-size:1.2em;padding:0px}
-.state-icon{font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;display:inline-block;margin-right:4px;vertical-align:middle;width:16px;height:16px;line-height:16px;text-align:center;font-size:16px}
+.state-icon{font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;display:inline-block;margin-right:4px;vertical-align:middle;width:16px;height:16px;line-height:16px;text-align:center;font-size:16px}
.state-icon-running{-webkit-animation:spin 2s infinite linear;-moz-animation:spin 2s infinite linear;-o-animation:spin 2s infinite linear;animation:spin 2s infinite linear}@-moz-keyframes spin{0%{-moz-transform:rotate(0deg)} 100%{-moz-transform:rotate(359deg)}}@-webkit-keyframes spin{0%{-webkit-transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg)}}@-o-keyframes spin{0%{-o-transform:rotate(0deg)} 100%{-o-transform:rotate(359deg)}}@-ms-keyframes spin{0%{-ms-transform:rotate(0deg)} 100%{-ms-transform:rotate(359deg)}}@keyframes spin{0%{transform:rotate(0deg)} 100%{transform:rotate(359deg)}}.state-icon-running:before{content:"\f110"}
.state-icon-upload{overflow:hidden}.state-icon-upload:before{display:inline-block;-webkit-animation:eclipse 2s infinite linear;-moz-animation:eclipse 2s infinite linear;-o-animation:eclipse 2s infinite linear;animation:eclipse 2s infinite linear;content:"\f062"}@-moz-keyframes eclipse{0%{-moz-transform:translate(0, 16px)} 100%{-moz-transform:translate(0, -16px)}}@-webkit-keyframes eclipse{0%{-webkit-transform:translate(0, 16px)} 100%{-webkit-transform:translate(0, -16px)}}@-o-keyframes eclipse{0%{-o-transform:translate(0, 16px)} 100%{-o-transform:translate(0, -16px)}}@-ms-keyframes eclipse{0%{-ms-transform:translate(0, 16px)} 100%{-ms-transform:translate(0, -16px)}}@keyframes eclipse{0%{transform:translate(0, 16px)} 100%{transform:translate(0, -16px)}}
.state-icon-error{background-color:white;border-radius:8px}.state-icon-error:before{font-size:20px;line-height:16px;color:red;content:"\f057"}
@@ -1974,9 +2084,9 @@
div.historyItem-setting_metadata{background:#ffc}div.historyItem-setting_metadata .state-icon{background-image:url(data_running.gif)}
div.historyItem-upload{background:#a6e4f7}div.historyItem-upload .state-icon{background-image:url(data_upload.gif)}
div.historyItem-queued{background:#eee}div.historyItem-queued .state-icon{background-image:url(sprite-history-states.png);background-position:0px -45px;width:15px;height:15px;height:15px}
-div.historyItem-noPermission{filter:alpha(opacity=60);-moz-opacity:.60;opacity:.60}div.historyItem-noPermission .state-icon{line-height:16px;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-noPermission .state-icon:before{content:"\f05e"}
-div.historyItem-paused{background:#d9edf7}div.historyItem-paused .state-icon{line-height:16px;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-paused .state-icon:before{content:"\f04c"}
-div.historyItem-new .state-icon{line-height:16px;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-new .state-icon:before{content:"\f071"}
+div.historyItem-noPermission{filter:alpha(opacity=60);-moz-opacity:.60;opacity:.60}div.historyItem-noPermission .state-icon{line-height:16px;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-noPermission .state-icon:before{content:"\f05e"}
+div.historyItem-paused{background:#d9edf7}div.historyItem-paused .state-icon{line-height:16px;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-paused .state-icon:before{content:"\f04c"}
+div.historyItem-new .state-icon{line-height:16px;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-new .state-icon:before{content:"\f071"}
div.historyItemTitleBar.spinner .state-icon{background:url(data_running.gif) 0 1px no-repeat !important}
div.historyItemButtons{float:right}div.historyItemButtons .icon-button.display{background-image:url(sprite-history-buttons.png);background-position:0px -48px;width:16px;height:16px;height:16px}
div.historyItemButtons .icon-button.display:hover{background-image:url(sprite-history-buttons.png);background-position:0px -64px;width:16px;height:16px;height:16px}
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/base.less
--- a/static/style/src/less/base.less
+++ b/static/style/src/less/base.less
@@ -742,9 +742,9 @@
#search-clear-btn {
position: absolute;
right: 6px;
- top: 5px;
+ top: 9px;
display: block;
- font-size: 1.4em;
+ font-size: 1.4em !important;
text-decoration: none;
color: #888;
.fa-icon;
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/core.less
--- a/static/style/src/less/fontawesome/core.less
+++ b/static/style/src/less/fontawesome/core.less
@@ -3,10 +3,9 @@
.@{fa-css-prefix} {
display: inline-block;
- font-family: FontAwesome;
- font-style: normal;
- font-weight: normal;
- line-height: 1;
+ font: normal normal normal 14px/1 FontAwesome; // shortening font declaration
+ font-size: inherit; // can't have font-size inherit on line above, so need to override
+ text-rendering: auto; // optimizelegibility throws things off #1094
-webkit-font-smoothing: antialiased;
-moz-osx-font-smoothing: grayscale;
}
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/font-awesome.less
--- a/static/style/src/less/fontawesome/font-awesome.less
+++ b/static/style/src/less/fontawesome/font-awesome.less
@@ -1,38 +1,17 @@
/*!
- * Font Awesome 4.0.1
- * the iconic font designed for Bootstrap
- * ------------------------------------------------------------------------------
- * The full suite of pictographic icons, examples, and documentation can be
- * found at http://fontawesome.io. Stay up to date on Twitter at
- * http://twitter.com/fontawesome.
- *
- * License
- * ------------------------------------------------------------------------------
- * - The Font Awesome font is licensed under SIL OFL 1.1 -
- * http://scripts.sil.org/OFL
- * - Font Awesome CSS, LESS, and SASS files are licensed under MIT License -
- * http://opensource.org/licenses/mit-license.html
- * - Font Awesome documentation licensed under CC BY 3.0 -
- * http://creativecommons.org/licenses/by/3.0/
- * - Attribution is no longer required in Font Awesome 3.0, but much appreciated:
- * "Font Awesome by Dave Gandy - http://fontawesome.io"
- *
- * Author - Dave Gandy
- * ------------------------------------------------------------------------------
- * Email: dave(a)fontawesome.io
- * Twitter: http://twitter.com/davegandy
- * Work: Lead Product Designer @ Kyruus - http://kyruus.com
+ * Font Awesome 4.2.0 by @davegandy - http://fontawesome.io - @fontawesome
+ * License - http://fontawesome.io/license (Font: SIL OFL 1.1, CSS: MIT License)
*/
-@import "variables";
-@import "mixins";
-@import "path";
-@import "core";
-@import "larger";
-@import "fixed-width";
-@import "list";
-@import "bordered-pulled";
-@import "spinning";
-@import "rotated-flipped";
-@import "stacked";
-@import "icons";
+@import "variables.less";
+@import "mixins.less";
+@import "path.less";
+@import "core.less";
+@import "larger.less";
+@import "fixed-width.less";
+@import "list.less";
+@import "bordered-pulled.less";
+@import "spinning.less";
+@import "rotated-flipped.less";
+@import "stacked.less";
+@import "icons.less";
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/icons.less
--- a/static/style/src/less/fontawesome/icons.less
+++ b/static/style/src/less/fontawesome/icons.less
@@ -14,6 +14,8 @@
.@{fa-css-prefix}-th:before { content: @fa-var-th; }
.@{fa-css-prefix}-th-list:before { content: @fa-var-th-list; }
.@{fa-css-prefix}-check:before { content: @fa-var-check; }
+.@{fa-css-prefix}-remove:before,
+.@{fa-css-prefix}-close:before,
.@{fa-css-prefix}-times:before { content: @fa-var-times; }
.@{fa-css-prefix}-search-plus:before { content: @fa-var-search-plus; }
.@{fa-css-prefix}-search-minus:before { content: @fa-var-search-minus; }
@@ -63,6 +65,8 @@
.@{fa-css-prefix}-outdent:before { content: @fa-var-outdent; }
.@{fa-css-prefix}-indent:before { content: @fa-var-indent; }
.@{fa-css-prefix}-video-camera:before { content: @fa-var-video-camera; }
+.@{fa-css-prefix}-photo:before,
+.@{fa-css-prefix}-image:before,
.@{fa-css-prefix}-picture-o:before { content: @fa-var-picture-o; }
.@{fa-css-prefix}-pencil:before { content: @fa-var-pencil; }
.@{fa-css-prefix}-map-marker:before { content: @fa-var-map-marker; }
@@ -72,7 +76,7 @@
.@{fa-css-prefix}-pencil-square-o:before { content: @fa-var-pencil-square-o; }
.@{fa-css-prefix}-share-square-o:before { content: @fa-var-share-square-o; }
.@{fa-css-prefix}-check-square-o:before { content: @fa-var-check-square-o; }
-.@{fa-css-prefix}-move:before { content: @fa-var-move; }
+.@{fa-css-prefix}-arrows:before { content: @fa-var-arrows; }
.@{fa-css-prefix}-step-backward:before { content: @fa-var-step-backward; }
.@{fa-css-prefix}-fast-backward:before { content: @fa-var-fast-backward; }
.@{fa-css-prefix}-backward:before { content: @fa-var-backward; }
@@ -101,8 +105,8 @@
.@{fa-css-prefix}-arrow-down:before { content: @fa-var-arrow-down; }
.@{fa-css-prefix}-mail-forward:before,
.@{fa-css-prefix}-share:before { content: @fa-var-share; }
-.@{fa-css-prefix}-resize-full:before { content: @fa-var-resize-full; }
-.@{fa-css-prefix}-resize-small:before { content: @fa-var-resize-small; }
+.@{fa-css-prefix}-expand:before { content: @fa-var-expand; }
+.@{fa-css-prefix}-compress:before { content: @fa-var-compress; }
.@{fa-css-prefix}-plus:before { content: @fa-var-plus; }
.@{fa-css-prefix}-minus:before { content: @fa-var-minus; }
.@{fa-css-prefix}-asterisk:before { content: @fa-var-asterisk; }
@@ -125,9 +129,10 @@
.@{fa-css-prefix}-shopping-cart:before { content: @fa-var-shopping-cart; }
.@{fa-css-prefix}-folder:before { content: @fa-var-folder; }
.@{fa-css-prefix}-folder-open:before { content: @fa-var-folder-open; }
-.@{fa-css-prefix}-resize-vertical:before { content: @fa-var-resize-vertical; }
-.@{fa-css-prefix}-resize-horizontal:before { content: @fa-var-resize-horizontal; }
-.@{fa-css-prefix}-bar-chart-o:before { content: @fa-var-bar-chart-o; }
+.@{fa-css-prefix}-arrows-v:before { content: @fa-var-arrows-v; }
+.@{fa-css-prefix}-arrows-h:before { content: @fa-var-arrows-h; }
+.@{fa-css-prefix}-bar-chart-o:before,
+.@{fa-css-prefix}-bar-chart:before { content: @fa-var-bar-chart; }
.@{fa-css-prefix}-twitter-square:before { content: @fa-var-twitter-square; }
.@{fa-css-prefix}-facebook-square:before { content: @fa-var-facebook-square; }
.@{fa-css-prefix}-camera-retro:before { content: @fa-var-camera-retro; }
@@ -175,8 +180,9 @@
.@{fa-css-prefix}-tasks:before { content: @fa-var-tasks; }
.@{fa-css-prefix}-filter:before { content: @fa-var-filter; }
.@{fa-css-prefix}-briefcase:before { content: @fa-var-briefcase; }
-.@{fa-css-prefix}-fullscreen:before { content: @fa-var-fullscreen; }
-.@{fa-css-prefix}-group:before { content: @fa-var-group; }
+.@{fa-css-prefix}-arrows-alt:before { content: @fa-var-arrows-alt; }
+.@{fa-css-prefix}-group:before,
+.@{fa-css-prefix}-users:before { content: @fa-var-users; }
.@{fa-css-prefix}-chain:before,
.@{fa-css-prefix}-link:before { content: @fa-var-link; }
.@{fa-css-prefix}-cloud:before { content: @fa-var-cloud; }
@@ -189,7 +195,9 @@
.@{fa-css-prefix}-save:before,
.@{fa-css-prefix}-floppy-o:before { content: @fa-var-floppy-o; }
.@{fa-css-prefix}-square:before { content: @fa-var-square; }
-.@{fa-css-prefix}-reorder:before { content: @fa-var-reorder; }
+.@{fa-css-prefix}-navicon:before,
+.@{fa-css-prefix}-reorder:before,
+.@{fa-css-prefix}-bars:before { content: @fa-var-bars; }
.@{fa-css-prefix}-list-ul:before { content: @fa-var-list-ul; }
.@{fa-css-prefix}-list-ol:before { content: @fa-var-list-ol; }
.@{fa-css-prefix}-strikethrough:before { content: @fa-var-strikethrough; }
@@ -210,9 +218,9 @@
.@{fa-css-prefix}-unsorted:before,
.@{fa-css-prefix}-sort:before { content: @fa-var-sort; }
.@{fa-css-prefix}-sort-down:before,
+.@{fa-css-prefix}-sort-desc:before { content: @fa-var-sort-desc; }
+.@{fa-css-prefix}-sort-up:before,
.@{fa-css-prefix}-sort-asc:before { content: @fa-var-sort-asc; }
-.@{fa-css-prefix}-sort-up:before,
-.@{fa-css-prefix}-sort-desc:before { content: @fa-var-sort-desc; }
.@{fa-css-prefix}-envelope:before { content: @fa-var-envelope; }
.@{fa-css-prefix}-linkedin:before { content: @fa-var-linkedin; }
.@{fa-css-prefix}-rotate-left:before,
@@ -240,8 +248,8 @@
.@{fa-css-prefix}-coffee:before { content: @fa-var-coffee; }
.@{fa-css-prefix}-cutlery:before { content: @fa-var-cutlery; }
.@{fa-css-prefix}-file-text-o:before { content: @fa-var-file-text-o; }
-.@{fa-css-prefix}-building:before { content: @fa-var-building; }
-.@{fa-css-prefix}-hospital:before { content: @fa-var-hospital; }
+.@{fa-css-prefix}-building-o:before { content: @fa-var-building-o; }
+.@{fa-css-prefix}-hospital-o:before { content: @fa-var-hospital-o; }
.@{fa-css-prefix}-ambulance:before { content: @fa-var-ambulance; }
.@{fa-css-prefix}-medkit:before { content: @fa-var-medkit; }
.@{fa-css-prefix}-fighter-jet:before { content: @fa-var-fighter-jet; }
@@ -271,8 +279,6 @@
.@{fa-css-prefix}-github-alt:before { content: @fa-var-github-alt; }
.@{fa-css-prefix}-folder-o:before { content: @fa-var-folder-o; }
.@{fa-css-prefix}-folder-open-o:before { content: @fa-var-folder-open-o; }
-.@{fa-css-prefix}-expand-o:before { content: @fa-var-expand-o; }
-.@{fa-css-prefix}-collapse-o:before { content: @fa-var-collapse-o; }
.@{fa-css-prefix}-smile-o:before { content: @fa-var-smile-o; }
.@{fa-css-prefix}-frown-o:before { content: @fa-var-frown-o; }
.@{fa-css-prefix}-meh-o:before { content: @fa-var-meh-o; }
@@ -282,8 +288,8 @@
.@{fa-css-prefix}-flag-checkered:before { content: @fa-var-flag-checkered; }
.@{fa-css-prefix}-terminal:before { content: @fa-var-terminal; }
.@{fa-css-prefix}-code:before { content: @fa-var-code; }
+.@{fa-css-prefix}-mail-reply-all:before,
.@{fa-css-prefix}-reply-all:before { content: @fa-var-reply-all; }
-.@{fa-css-prefix}-mail-reply-all:before { content: @fa-var-mail-reply-all; }
.@{fa-css-prefix}-star-half-empty:before,
.@{fa-css-prefix}-star-half-full:before,
.@{fa-css-prefix}-star-half-o:before { content: @fa-var-star-half-o; }
@@ -313,10 +319,10 @@
.@{fa-css-prefix}-html5:before { content: @fa-var-html5; }
.@{fa-css-prefix}-css3:before { content: @fa-var-css3; }
.@{fa-css-prefix}-anchor:before { content: @fa-var-anchor; }
-.@{fa-css-prefix}-unlock-o:before { content: @fa-var-unlock-o; }
+.@{fa-css-prefix}-unlock-alt:before { content: @fa-var-unlock-alt; }
.@{fa-css-prefix}-bullseye:before { content: @fa-var-bullseye; }
-.@{fa-css-prefix}-ellipsis-horizontal:before { content: @fa-var-ellipsis-horizontal; }
-.@{fa-css-prefix}-ellipsis-vertical:before { content: @fa-var-ellipsis-vertical; }
+.@{fa-css-prefix}-ellipsis-h:before { content: @fa-var-ellipsis-h; }
+.@{fa-css-prefix}-ellipsis-v:before { content: @fa-var-ellipsis-v; }
.@{fa-css-prefix}-rss-square:before { content: @fa-var-rss-square; }
.@{fa-css-prefix}-play-circle:before { content: @fa-var-play-circle; }
.@{fa-css-prefix}-ticket:before { content: @fa-var-ticket; }
@@ -410,3 +416,137 @@
.@{fa-css-prefix}-vimeo-square:before { content: @fa-var-vimeo-square; }
.@{fa-css-prefix}-turkish-lira:before,
.@{fa-css-prefix}-try:before { content: @fa-var-try; }
+.@{fa-css-prefix}-plus-square-o:before { content: @fa-var-plus-square-o; }
+.@{fa-css-prefix}-space-shuttle:before { content: @fa-var-space-shuttle; }
+.@{fa-css-prefix}-slack:before { content: @fa-var-slack; }
+.@{fa-css-prefix}-envelope-square:before { content: @fa-var-envelope-square; }
+.@{fa-css-prefix}-wordpress:before { content: @fa-var-wordpress; }
+.@{fa-css-prefix}-openid:before { content: @fa-var-openid; }
+.@{fa-css-prefix}-institution:before,
+.@{fa-css-prefix}-bank:before,
+.@{fa-css-prefix}-university:before { content: @fa-var-university; }
+.@{fa-css-prefix}-mortar-board:before,
+.@{fa-css-prefix}-graduation-cap:before { content: @fa-var-graduation-cap; }
+.@{fa-css-prefix}-yahoo:before { content: @fa-var-yahoo; }
+.@{fa-css-prefix}-google:before { content: @fa-var-google; }
+.@{fa-css-prefix}-reddit:before { content: @fa-var-reddit; }
+.@{fa-css-prefix}-reddit-square:before { content: @fa-var-reddit-square; }
+.@{fa-css-prefix}-stumbleupon-circle:before { content: @fa-var-stumbleupon-circle; }
+.@{fa-css-prefix}-stumbleupon:before { content: @fa-var-stumbleupon; }
+.@{fa-css-prefix}-delicious:before { content: @fa-var-delicious; }
+.@{fa-css-prefix}-digg:before { content: @fa-var-digg; }
+.@{fa-css-prefix}-pied-piper:before { content: @fa-var-pied-piper; }
+.@{fa-css-prefix}-pied-piper-alt:before { content: @fa-var-pied-piper-alt; }
+.@{fa-css-prefix}-drupal:before { content: @fa-var-drupal; }
+.@{fa-css-prefix}-joomla:before { content: @fa-var-joomla; }
+.@{fa-css-prefix}-language:before { content: @fa-var-language; }
+.@{fa-css-prefix}-fax:before { content: @fa-var-fax; }
+.@{fa-css-prefix}-building:before { content: @fa-var-building; }
+.@{fa-css-prefix}-child:before { content: @fa-var-child; }
+.@{fa-css-prefix}-paw:before { content: @fa-var-paw; }
+.@{fa-css-prefix}-spoon:before { content: @fa-var-spoon; }
+.@{fa-css-prefix}-cube:before { content: @fa-var-cube; }
+.@{fa-css-prefix}-cubes:before { content: @fa-var-cubes; }
+.@{fa-css-prefix}-behance:before { content: @fa-var-behance; }
+.@{fa-css-prefix}-behance-square:before { content: @fa-var-behance-square; }
+.@{fa-css-prefix}-steam:before { content: @fa-var-steam; }
+.@{fa-css-prefix}-steam-square:before { content: @fa-var-steam-square; }
+.@{fa-css-prefix}-recycle:before { content: @fa-var-recycle; }
+.@{fa-css-prefix}-automobile:before,
+.@{fa-css-prefix}-car:before { content: @fa-var-car; }
+.@{fa-css-prefix}-cab:before,
+.@{fa-css-prefix}-taxi:before { content: @fa-var-taxi; }
+.@{fa-css-prefix}-tree:before { content: @fa-var-tree; }
+.@{fa-css-prefix}-spotify:before { content: @fa-var-spotify; }
+.@{fa-css-prefix}-deviantart:before { content: @fa-var-deviantart; }
+.@{fa-css-prefix}-soundcloud:before { content: @fa-var-soundcloud; }
+.@{fa-css-prefix}-database:before { content: @fa-var-database; }
+.@{fa-css-prefix}-file-pdf-o:before { content: @fa-var-file-pdf-o; }
+.@{fa-css-prefix}-file-word-o:before { content: @fa-var-file-word-o; }
+.@{fa-css-prefix}-file-excel-o:before { content: @fa-var-file-excel-o; }
+.@{fa-css-prefix}-file-powerpoint-o:before { content: @fa-var-file-powerpoint-o; }
+.@{fa-css-prefix}-file-photo-o:before,
+.@{fa-css-prefix}-file-picture-o:before,
+.@{fa-css-prefix}-file-image-o:before { content: @fa-var-file-image-o; }
+.@{fa-css-prefix}-file-zip-o:before,
+.@{fa-css-prefix}-file-archive-o:before { content: @fa-var-file-archive-o; }
+.@{fa-css-prefix}-file-sound-o:before,
+.@{fa-css-prefix}-file-audio-o:before { content: @fa-var-file-audio-o; }
+.@{fa-css-prefix}-file-movie-o:before,
+.@{fa-css-prefix}-file-video-o:before { content: @fa-var-file-video-o; }
+.@{fa-css-prefix}-file-code-o:before { content: @fa-var-file-code-o; }
+.@{fa-css-prefix}-vine:before { content: @fa-var-vine; }
+.@{fa-css-prefix}-codepen:before { content: @fa-var-codepen; }
+.@{fa-css-prefix}-jsfiddle:before { content: @fa-var-jsfiddle; }
+.@{fa-css-prefix}-life-bouy:before,
+.@{fa-css-prefix}-life-buoy:before,
+.@{fa-css-prefix}-life-saver:before,
+.@{fa-css-prefix}-support:before,
+.@{fa-css-prefix}-life-ring:before { content: @fa-var-life-ring; }
+.@{fa-css-prefix}-circle-o-notch:before { content: @fa-var-circle-o-notch; }
+.@{fa-css-prefix}-ra:before,
+.@{fa-css-prefix}-rebel:before { content: @fa-var-rebel; }
+.@{fa-css-prefix}-ge:before,
+.@{fa-css-prefix}-empire:before { content: @fa-var-empire; }
+.@{fa-css-prefix}-git-square:before { content: @fa-var-git-square; }
+.@{fa-css-prefix}-git:before { content: @fa-var-git; }
+.@{fa-css-prefix}-hacker-news:before { content: @fa-var-hacker-news; }
+.@{fa-css-prefix}-tencent-weibo:before { content: @fa-var-tencent-weibo; }
+.@{fa-css-prefix}-qq:before { content: @fa-var-qq; }
+.@{fa-css-prefix}-wechat:before,
+.@{fa-css-prefix}-weixin:before { content: @fa-var-weixin; }
+.@{fa-css-prefix}-send:before,
+.@{fa-css-prefix}-paper-plane:before { content: @fa-var-paper-plane; }
+.@{fa-css-prefix}-send-o:before,
+.@{fa-css-prefix}-paper-plane-o:before { content: @fa-var-paper-plane-o; }
+.@{fa-css-prefix}-history:before { content: @fa-var-history; }
+.@{fa-css-prefix}-circle-thin:before { content: @fa-var-circle-thin; }
+.@{fa-css-prefix}-header:before { content: @fa-var-header; }
+.@{fa-css-prefix}-paragraph:before { content: @fa-var-paragraph; }
+.@{fa-css-prefix}-sliders:before { content: @fa-var-sliders; }
+.@{fa-css-prefix}-share-alt:before { content: @fa-var-share-alt; }
+.@{fa-css-prefix}-share-alt-square:before { content: @fa-var-share-alt-square; }
+.@{fa-css-prefix}-bomb:before { content: @fa-var-bomb; }
+.@{fa-css-prefix}-soccer-ball-o:before,
+.@{fa-css-prefix}-futbol-o:before { content: @fa-var-futbol-o; }
+.@{fa-css-prefix}-tty:before { content: @fa-var-tty; }
+.@{fa-css-prefix}-binoculars:before { content: @fa-var-binoculars; }
+.@{fa-css-prefix}-plug:before { content: @fa-var-plug; }
+.@{fa-css-prefix}-slideshare:before { content: @fa-var-slideshare; }
+.@{fa-css-prefix}-twitch:before { content: @fa-var-twitch; }
+.@{fa-css-prefix}-yelp:before { content: @fa-var-yelp; }
+.@{fa-css-prefix}-newspaper-o:before { content: @fa-var-newspaper-o; }
+.@{fa-css-prefix}-wifi:before { content: @fa-var-wifi; }
+.@{fa-css-prefix}-calculator:before { content: @fa-var-calculator; }
+.@{fa-css-prefix}-paypal:before { content: @fa-var-paypal; }
+.@{fa-css-prefix}-google-wallet:before { content: @fa-var-google-wallet; }
+.@{fa-css-prefix}-cc-visa:before { content: @fa-var-cc-visa; }
+.@{fa-css-prefix}-cc-mastercard:before { content: @fa-var-cc-mastercard; }
+.@{fa-css-prefix}-cc-discover:before { content: @fa-var-cc-discover; }
+.@{fa-css-prefix}-cc-amex:before { content: @fa-var-cc-amex; }
+.@{fa-css-prefix}-cc-paypal:before { content: @fa-var-cc-paypal; }
+.@{fa-css-prefix}-cc-stripe:before { content: @fa-var-cc-stripe; }
+.@{fa-css-prefix}-bell-slash:before { content: @fa-var-bell-slash; }
+.@{fa-css-prefix}-bell-slash-o:before { content: @fa-var-bell-slash-o; }
+.@{fa-css-prefix}-trash:before { content: @fa-var-trash; }
+.@{fa-css-prefix}-copyright:before { content: @fa-var-copyright; }
+.@{fa-css-prefix}-at:before { content: @fa-var-at; }
+.@{fa-css-prefix}-eyedropper:before { content: @fa-var-eyedropper; }
+.@{fa-css-prefix}-paint-brush:before { content: @fa-var-paint-brush; }
+.@{fa-css-prefix}-birthday-cake:before { content: @fa-var-birthday-cake; }
+.@{fa-css-prefix}-area-chart:before { content: @fa-var-area-chart; }
+.@{fa-css-prefix}-pie-chart:before { content: @fa-var-pie-chart; }
+.@{fa-css-prefix}-line-chart:before { content: @fa-var-line-chart; }
+.@{fa-css-prefix}-lastfm:before { content: @fa-var-lastfm; }
+.@{fa-css-prefix}-lastfm-square:before { content: @fa-var-lastfm-square; }
+.@{fa-css-prefix}-toggle-off:before { content: @fa-var-toggle-off; }
+.@{fa-css-prefix}-toggle-on:before { content: @fa-var-toggle-on; }
+.@{fa-css-prefix}-bicycle:before { content: @fa-var-bicycle; }
+.@{fa-css-prefix}-bus:before { content: @fa-var-bus; }
+.@{fa-css-prefix}-ioxhost:before { content: @fa-var-ioxhost; }
+.@{fa-css-prefix}-angellist:before { content: @fa-var-angellist; }
+.@{fa-css-prefix}-cc:before { content: @fa-var-cc; }
+.@{fa-css-prefix}-shekel:before,
+.@{fa-css-prefix}-sheqel:before,
+.@{fa-css-prefix}-ils:before { content: @fa-var-ils; }
+.@{fa-css-prefix}-meanpath:before { content: @fa-var-meanpath; }
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/list.less
--- a/static/style/src/less/fontawesome/list.less
+++ b/static/style/src/less/fontawesome/list.less
@@ -14,6 +14,6 @@
top: (2em / 14);
text-align: center;
&.@{fa-css-prefix}-lg {
- left: -@fa-li-width + (4em / 14);
+ left: (-@fa-li-width + (4em / 14));
}
}
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/mixins.less
--- a/static/style/src/less/fontawesome/mixins.less
+++ b/static/style/src/less/fontawesome/mixins.less
@@ -1,20 +1,25 @@
// Mixins
// --------------------------
+.fa-icon() {
+ display: inline-block;
+ font: normal normal normal 14px/1 FontAwesome; // shortening font declaration
+ font-size: inherit; // can't have font-size inherit on line above, so need to override
+ text-rendering: auto; // optimizelegibility throws things off #1094
+ -webkit-font-smoothing: antialiased;
+ -moz-osx-font-smoothing: grayscale;
+}
+
.fa-icon-rotate(@degrees, @rotation) {
filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=@rotation);
-webkit-transform: rotate(@degrees);
- -moz-transform: rotate(@degrees);
-ms-transform: rotate(@degrees);
- -o-transform: rotate(@degrees);
transform: rotate(@degrees);
}
.fa-icon-flip(@horiz, @vert, @rotation) {
filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=@rotation, mirror=1);
-webkit-transform: scale(@horiz, @vert);
- -moz-transform: scale(@horiz, @vert);
-ms-transform: scale(@horiz, @vert);
- -o-transform: scale(@horiz, @vert);
transform: scale(@horiz, @vert);
}
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/rotated-flipped.less
--- a/static/style/src/less/fontawesome/rotated-flipped.less
+++ b/static/style/src/less/fontawesome/rotated-flipped.less
@@ -7,3 +7,14 @@
.@{fa-css-prefix}-flip-horizontal { .fa-icon-flip(-1, 1, 0); }
.@{fa-css-prefix}-flip-vertical { .fa-icon-flip(1, -1, 2); }
+
+// Hook for IE8-9
+// -------------------------
+
+:root .@{fa-css-prefix}-rotate-90,
+:root .@{fa-css-prefix}-rotate-180,
+:root .@{fa-css-prefix}-rotate-270,
+:root .@{fa-css-prefix}-flip-horizontal,
+:root .@{fa-css-prefix}-flip-vertical {
+ filter: none;
+}
diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/spinning.less
--- a/static/style/src/less/fontawesome/spinning.less
+++ b/static/style/src/less/fontawesome/spinning.less
@@ -2,29 +2,28 @@
// --------------------------
.@{fa-css-prefix}-spin {
- -webkit-animation: spin 2s infinite linear;
- -moz-animation: spin 2s infinite linear;
- -o-animation: spin 2s infinite linear;
- animation: spin 2s infinite linear;
+ -webkit-animation: fa-spin 2s infinite linear;
+ animation: fa-spin 2s infinite linear;
}
-@-moz-keyframes spin {
- 0% { -moz-transform: rotate(0deg); }
- 100% { -moz-transform: rotate(359deg); }
+@-webkit-keyframes fa-spin {
+ 0% {
+ -webkit-transform: rotate(0deg);
+ transform: rotate(0deg);
+ }
+ 100% {
+ -webkit-transform: rotate(359deg);
+ transform: rotate(359deg);
+ }
}
-@-webkit-keyframes spin {
- 0% { -webkit-transform: rotate(0deg); }
- 100% { -webkit-transform: rotate(359deg); }
+
+@keyframes fa-spin {
+ 0% {
+ -webkit-transform: rotate(0deg);
+ transform: rotate(0deg);
+ }
+ 100% {
+ -webkit-transform: rotate(359deg);
+ transform: rotate(359deg);
+ }
}
-@-o-keyframes spin {
- 0% { -o-transform: rotate(0deg); }
- 100% { -o-transform: rotate(359deg); }
-}
-@-ms-keyframes spin {
- 0% { -ms-transform: rotate(0deg); }
- 100% { -ms-transform: rotate(359deg); }
-}
-@keyframes spin {
- 0% { transform: rotate(0deg); }
- 100% { transform: rotate(359deg); }
-}
This diff is so big that we needed to truncate the remainder.
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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