10 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/fa96c4b29e85/
Changeset: fa96c4b29e85
User: guerler
Date: 2014-03-10 06:08:31
Summary: Charts: Small style fix
Affected #: 3 files
diff -r f3aa139c4bc4c41edbe42183f33680c01be9f44e -r fa96c4b29e85d0027dae381692420b79cecb9139 config/plugins/visualizations/charts/templates/charts.mako
--- a/config/plugins/visualizations/charts/templates/charts.mako
+++ b/config/plugins/visualizations/charts/templates/charts.mako
@@ -11,7 +11,6 @@
<title>${hda.name} | ${visualization_name}</title>
${h.js( 'libs/jquery/jquery',
- 'libs/jquery/select2',
'libs/bootstrap',
'libs/require',
'libs/underscore',
diff -r f3aa139c4bc4c41edbe42183f33680c01be9f44e -r fa96c4b29e85d0027dae381692420b79cecb9139 static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1280,7 +1280,7 @@
.upload-settings .upload-settings-cover{position:absolute;width:100%;height:100%;top:0px;left:0px;background:#fff;opacity:0.4;cursor:no-drop}
.popover-view{max-width:700px;display:none}.popover-view .popover-close{position:absolute;right:10px;top:7px;font-size:1.2em;cursor:pointer}
.popover-view .popover-title{padding:4px 10px}
-.styled-select{position:relative;height:27px;overflow:hidden;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px}.styled-select .button{position:relative;width:25px;height:inherit;float:right;border-left:1px solid #bfbfbf;font-size:1.2em;padding-left:8px;padding-top:4px;background:#f2f2f2}
+.styled-select{position:relative;height:27px;overflow:hidden;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px}.styled-select .button{position:relative;width:25px;height:100%;float:right;border-left:1px solid #bfbfbf;padding-left:9px;padding-top:4px;background:#f2f2f2}
.styled-select select{position:absolute;top:0px;height:100%;width:100%;padding-left:5px;cursor:pointer;background:transparent;border:0;border-radius:0;-webkit-appearance:none}
.libraryRow{background-color:#ebd9b2}
.datasetHighlighted{background-color:#f9f9f9}
diff -r f3aa139c4bc4c41edbe42183f33680c01be9f44e -r fa96c4b29e85d0027dae381692420b79cecb9139 static/style/src/less/ui.less
--- a/static/style/src/less/ui.less
+++ b/static/style/src/less/ui.less
@@ -26,11 +26,10 @@
.button {
position: relative;
width: 25px;
- height: inherit;
+ height: 100%;
float: right;
border-left: 1px solid @border-default-color;
- font-size: 1.2em;
- padding-left: 8px;
+ padding-left: 9px;
padding-top: 4px;
background: @btn-default-bg;
}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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10 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/f3aa139c4bc4/
Changeset: f3aa139c4bc4
User: guerler
Date: 2014-03-10 02:37:01
Summary: Charts: Adjust style
Affected #: 2 files
diff -r c04776e03a54ef7d6d248541b008adf0491288ab -r f3aa139c4bc4c41edbe42183f33680c01be9f44e static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1280,7 +1280,7 @@
.upload-settings .upload-settings-cover{position:absolute;width:100%;height:100%;top:0px;left:0px;background:#fff;opacity:0.4;cursor:no-drop}
.popover-view{max-width:700px;display:none}.popover-view .popover-close{position:absolute;right:10px;top:7px;font-size:1.2em;cursor:pointer}
.popover-view .popover-title{padding:4px 10px}
-.styled-select{position:relative;height:27px;overflow:hidden;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px}.styled-select .button{position:relative;width:25px;height:inherit;float:right;border-left:1px solid #bfbfbf;font-size:1.2em;padding-left:7px;padding-top:3px;background:#f2f2f2}
+.styled-select{position:relative;height:27px;overflow:hidden;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px}.styled-select .button{position:relative;width:25px;height:inherit;float:right;border-left:1px solid #bfbfbf;font-size:1.2em;padding-left:8px;padding-top:4px;background:#f2f2f2}
.styled-select select{position:absolute;top:0px;height:100%;width:100%;padding-left:5px;cursor:pointer;background:transparent;border:0;border-radius:0;-webkit-appearance:none}
.libraryRow{background-color:#ebd9b2}
.datasetHighlighted{background-color:#f9f9f9}
diff -r c04776e03a54ef7d6d248541b008adf0491288ab -r f3aa139c4bc4c41edbe42183f33680c01be9f44e static/style/src/less/ui.less
--- a/static/style/src/less/ui.less
+++ b/static/style/src/less/ui.less
@@ -30,8 +30,8 @@
float: right;
border-left: 1px solid @border-default-color;
font-size: 1.2em;
- padding-left: 7px;
- padding-top: 3px;
+ padding-left: 8px;
+ padding-top: 4px;
background: @btn-default-bg;
}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Charts: Fix select style
by commits-noreply＠bitbucket.org 10 Mar '14
by commits-noreply＠bitbucket.org 10 Mar '14
10 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/c04776e03a54/
Changeset: c04776e03a54
User: guerler
Date: 2014-03-10 02:08:56
Summary: Charts: Fix select style
Affected #: 12 files
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/build-app.js
--- a/config/plugins/visualizations/charts/static/build-app.js
+++ b/config/plugins/visualizations/charts/static/build-app.js
@@ -3,4 +3,4 @@
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No response.");else{Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshHdas();var n=e.outputs[0];t.state("queued","Job has been queued..."),t.set("dataset_id_job",n.id),i._loop(n.id,function(e){switch(e.state){case"ok":return t.state("success","Job completed successfully..."),r(e),!0;case"error":return t.state("failed","Job has failed. Please check the history for details."),!0;case"running":return t.state("running","Job is running..."),!1}})}},function(e){t.state("failed","Job submission failed. 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p)p[f].values=[];var d=this;e.request("GET",config.root+"api/datasets/"+t.id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},function(e){for(var i in e.data){var s=e.data[i];for(var o in t.groups){var a=t.groups[o],f={x:parseInt(i)+r};for(var l in a.columns){var c=a.columns[l],h=u[c],d=s[h];if(isNaN(d)||!d)d=0;f[l]=d}p[o].values.push(f)}}n(p)})}})}),define("plugin/library/table",["utils/utils"],function(e){return Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null},events:{click:"_onclick",dblclick:"_ondblclick"},first:!0,initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e){var t=$("<td></td>");t.append(e),this.row.append(t)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},remove:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},removeAll:function(){this.$tbody.html(""),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.remove(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="grid"><thead></thead><tbody style="cursor: pointer;"></tbody></table><tmessage>'+e.content+"</tmessage>"+"<div>"}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data 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n=self.app.charts.get(e);this.portlet.title(n.get("title")),this.portlet.setOperation("edit",function(){self.app.chart.copy(n),self.app.charts_view.hide(),self.app.chart_view.$el.show()}),t.$el.show(),$(window).trigger("resize")}},hideCharts:function(){this.$el.find(".item").hide()},show:function(){$(".tooltip").hide(),this.$el.show()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshChart:function(e){var t=this;if(!e.ready()){t.app.log("viewport:_refreshChart()","Invalid attempt to refresh chart before completion.");return}var n=e.id;this._removeChart(n);var r="#"+n,i=$(this._template({id:r}));this.portlet.append(i);var s=d3.select(r+" svg");this.list[n]={svg:s,$el:i},this.showChart(n),e.off("change:state"),e.on("change:state",function(){var t=i.find("#info"),n=t.find("#icon");n.removeClass(),t.show(),t.find("#text").html(e.get("state_info"));var r=e.get("state");switch(r){case"ok":t.hide();break;case"failed":n.addClass("fa fa-warning");break;default:n.addClass("fa fa-spinner fa-spin")}}),e.state("wait","Please wait...");var o=e.get("type"),u=this.app.types.get(o),t=this;require(["plugin/charts/"+o+"/"+o],function(n){var r=new n(t.app,{svg:s}),i=u.mode;i=="execute"?t.app.jobs.submit(e,t._defaultRequestString(e),function(){r.draw(e,t._defaultRequestDictionary(e))}):r.draw(e,t._defaultRequestDictionary(e))})},_removeChart:function(e){var t=this.list[e];t&&(t.svg.remove(),t.$el.remove())},_template:function(e){return'<div id="'+e.id.substr(1)+'" class="item">'+'<span id="info">'+'<span id="icon" style="font-size: 1.2em; display: inline-block;"/>'+'<span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/>'+"</span>"+'<svg style="height: auto;"/>'+"</div>"},_defaultRequestString:function(e){var t=this.app.types.get(e.get("type")),n="",r=0;return e.groups.each(function(e){for(var i in t.columns)n+=i+"_"+ ++r+":"+(parseInt(e.get(i))+1)+", "}),n.substring(0,n.length-2)},_defaultRequestDictionary:function(e){var t=this.app.types.get(e.get("type")),n={id:e.get("dataset_id"),groups:[]},r=0;return e.groups.each(function(e){var i={};for(var s in t.columns)i[s]=e.get(s);n.groups.push({key:++r+":"+e.get("key"),columns:i})}),n}})}),define("plugin/views/charts",["mvc/ui/ui-portlet","plugin/library/table","plugin/library/ui","utils/utils","plugin/models/group","plugin/views/viewport"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(i,o){this.app=i,this.viewport_view=new s(i),this.table=new t({content:"Add charts to this table.",ondblclick:function(e){var t=u.app.charts.get(e);u.app.chart.copy(t),u.hide(),u.app.chart_view.$el.show()},onchange:function(e){var t=u.app.charts.get(e);u.app.config.set("title",t.get("title")),u.viewport_view.showChart(e)}});var u=this;this.portlet=new e.View({icon:"fa-list",title:"List of created charts:",height:100,operations:{"new":new n.ButtonIcon({icon:"fa-magic",tooltip:"Create a new Chart",title:"New",onclick:function(){u.hide(),u.app.chart.reset(),u.app.chart_view.$el.show()}}),"delete":new n.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this Chart",title:"Delete",onclick:function(){var e=u.table.value();if(!e)return;var t=u.app.charts.get(e);u.app.modal.show({title:"Are you sure?",body:'The selected chart "'+t.get("title")+'" will be irreversibly deleted.',buttons:{Cancel:function(){u.app.modal.hide()},Delete:function(){u.app.modal.hide(),u.app.charts.remove(e)}}})}})}}),this.portlet.append(this.table.$el),this.app.options.config.widget||this.$el.append(this.portlet.$el),this.$el.append(r.wrap("")),this.$el.append(this.viewport_view.$el);var u=this;this.app.charts.on("add",function(e){u._addChart(e)}),this.app.charts.on("remove",function(e){u._removeChart(e)}),this.app.charts.on("change",function(e){u._changeChart(e)})},hide:function(){$(".tooltip").hide(),this.$el.hide()},_addChart:function(e){this.table.add(e.get("title"));var t=this.app.types.get(e.get("type"));this.table.add(t.title),this.table.add("Last change: "+e.get("date")),this.table.prepend(e.get("id")),this.table.value(e.get("id"))},_removeChart:function(e){this.table.remove(e.id),this.table.size()==0?(this.hide(),this.app.chart.reset(),this.app.chart_view.$el.show()):this.table.value(this.app.charts.last().id)},_changeChart:function(e){e.get("type")&&(this._addChart(e),this.table.value(e.id))}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,list:{},$nav:null,$content:null,first_tab:null,optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom"}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=e.id,n={$title:$(this._template_tab(e)),$content:$(this._template_tab_content(e)),removable:e.ondel?!0:!1};this.list[t]=n,this.options.onnew?this.$nav.find("#new-tab").before(n.$title):this.$nav.append(n.$title),n.$content.append(e.$el),this.$content.append(n.$content),_.size(this.list)==1&&(n.$title.addClass("active"),n.$content.addClass("active"),this.first_tab=t);if(e.ondel){var r=n.$title.find("#delete");r.tooltip({title:"Delete this tab",placement:"bottom"}),r.on("click",function(){return r.tooltip("destroy"),e.ondel(),!1})}e.onclick&&n.$title.on("click",function(){e.onclick()})},del:function(e){var t=this.list[e];t.$title.remove(),t.$content.remove(),delete t,this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list){var t=this.list[e];t.removable&&this.del(e)}},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&this.list[e].$title.find("a").tab("show")},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.list[e].$title.find("#text");return t&&n.html(t),n.html()},_template:function(e){return'<div class="tabbable tabs-left"><ul class="tab-navigation nav nav-tabs"/><div class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i style="font-size: 0.8em; margin-right: 5px;" class="fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="title-'+e.id+'">'+'<a title="" href="#tab-'+e.id+'" data-toggle="tab" data-original-title="">'+'<span id="text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" style="font-size: 0.8em; margin-left: 5px; cursor: pointer;" class="fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"ok",state_info:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state_info",t),this.set("state",e)},ready:function(){return this.get("state")=="ok"||this.get("state")=="failed"}})}),define("plugin/views/group",["plugin/library/table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({columns:[],initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(){s.group.set("key",s.group_key.value())}}),this.table=new e({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.app.types.get(n);this.table.removeAll();var s={};for(var o in i.columns){var u=this.group.get(o);u||this.group.set(o,0);var a=i.columns[o],f=new t.Select.View({id:"select_"+o,gid:o,onchange:function(e){r.group.set(this.gid,e)},value:u,wait:!0});this.table.add(a.title),this.table.add(f.$el),this.table.append(o),s[o]=f}this.app.datasets.request({id:e},function(e){r.columns=[];var t=e.metadata_column_types;for(var n in t)(t[n]=="int"||t[n]=="float")&&r.columns.push({label:"Column: "+(parseInt(n)+1)+" ["+t[n]+"]",value:n});for(var n in s)s[n].update(r.columns),s[n].show()})},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({initialize:function(r){this.table_title=new t.Label({title:r.title}),this.table=new e({content:r.content});var i=$("<div/>");i.append(n.wrap(this.table_title.$el)),i.append(n.wrap(this.table.$el)),this.setElement(i)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.removeAll();for(var n in e)this._add(n,e[n],t)},_add:function(e,n,r){var i=null,s=n.type;switch(s){case"text":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"select":i=new t.Select.View({data:n.data,onchange:function(){r.set(e,i.value())}});break;case"slider":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"separator":i=$("<div/>");break;default:console.log("ui-table-form:_add","Unknown setting type ("+n.type+")");return}if(s!="separator"){r.get(e)||r.set(e,n.init),i.value(r.get(e));var o=$("<div/>");o.append(i.$el),o.append('<div class="toolParamHelp" style="font-size: 0.9em;">'+n.info+"</div>"),this.table.add('<span style="white-space: nowrap;">'+n.title+"</span>"),this.table.add(o)}else this.table.add('<h6 style="white-space: nowrap;">'+n.title+":<h6/>"),this.table.add($("<div/>"));this.table.append(e)}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View({title:"Chart options:",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refreshTable()})},_refreshTable:function(){var e=this.chart.get("type");if(!e)return;var t=this.app.types.get(e);this.form.title(t.title+":"),this.form.update(t.settings,this.chart.settings)}})}),define("plugin/views/chart",["mvc/ui/ui-tabs","plugin/library/table","plugin/library/ui","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings"],function(e,t,n,r,i,s,o,u){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(i,s){this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault);var o=this;this.table=new t({header:!1,onconfirm:function(e){o.chart.groups.length>0?o.app.modal.show({title:"Switching to another chart type?",body:"If you continue your settings and selections will be reseted.",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o.table.value(e)}}}):o.table.value(e)},onchange:function(e){o.chart.groups.reset(),o.chart.settings.clear(),o.chart.set({type:e})},ondblclick:function(e){o.tabs.show("settings")},content:"No chart types available"});var a=0,f=i.types.attributes;for(var l in f){var c=f[l];this.table.add(++a+"."),this.table.add(c.title),this.table.append(l)}this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)},operations:{save:new n.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o.chart.groups.length==0&&o._addGroupModel(),o._saveChart(),o.hide(),o.app.charts_view.$el.show()}}),back:new n.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Return",onclick:function(){o.hide(),o.app.charts_view.$el.show()}})}}),this.title=new n.Input({placeholder:"Chart title",onchange:function(){o.app.config.set("title",o.title.value())}});var h=$("<div/>");h.append(r.wrap((new n.Label({title:"Provide a chart title:"})).$el)),h.append(r.wrap(this.title.$el)),h.append(r.wrap((new n.Label({title:"Select a chart type:"})).$el)),h.append(r.wrap(this.table.$el)),this.tabs.add({id:"main",title:"Start",$el:h}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.setElement(this.tabs.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o.title.value(e.get("title")),o.app.config.set("title",e.get("title"))}),this.chart.on("change:type",function(e){o.table.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.charts.on("add",function(e){o.tabs.showOperation("back")}),this.app.charts.on("remove",function(e){o.app.charts.length==0&&o.tabs.hideOperation("back")}),this.app.charts.on("reset",function(e){o.tabs.hideOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Chart data"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e}),r=t.chart.groups.length;this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey()},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey()},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","bardiagram"),this.chart.set("dataset_id",this.app.options.dataset.id),this.chart.set("dataset_hid",this.app.options.dataset.hid),this.chart.set("history_id",this.app.options.dataset.history_id),this.chart.set("title","New Chart")},_saveChart:function(){this.chart.set({type:this.table.value(),title:this.title.value(),date:r.time()});var 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Please make sure that 'R-kit' is installed.")})},_loop:function(t,n){var r=this;e.request("GET",config.root+"api/jobs/"+t,{},function(e){n(e)||setTimeout(function(){r._loop(t,n)},r.app.config.get("query_timeout"))})}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(t,n,r){var i=this;if(t.groups)this._fetch(t,n);else{var s=this.list[t.id];if(s){n(s);return}e.request("GET",config.root+"api/datasets/"+t.id,{},function(e){switch(e.state){case"error":r&&r(e);break;default:i.list[t.id]=e,n(e)}})}},_fetch:function(t,n){var r=t.start?t.start:0,i=Math.abs(t.end-t.start),s=this.app.config.get("query_limit");if(!i||i>s)i=s;var o="",u={},a=0;for(var f in t.groups){var l=t.groups[f];for(var c in l.columns){var h=l.columns[c];o+=h+",",u[h]=a,a++}}if(a==0){n({});return}o=o.substring(0,o.length-1);var p=t.groups.slice(0);for(var f in 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t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t){var n=$("<td></td>");t&&n.css("width",t),n.append(e),this.row.append(n)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},remove:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},removeAll:function(){this.$tbody.html(""),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.remove(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="grid"><thead></thead><tbody style="cursor: pointer;"></tbody></table><tmessage>'+e.content+"</tmessage>"+"<div>"}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data 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n=self.app.charts.get(e);this.portlet.title(n.get("title")),this.portlet.setOperation("edit",function(){self.app.chart.copy(n),self.app.charts_view.hide(),self.app.chart_view.$el.show()}),t.$el.show(),$(window).trigger("resize")}},hideCharts:function(){this.$el.find(".item").hide()},show:function(){$(".tooltip").hide(),this.$el.show()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshChart:function(e){var t=this;if(!e.ready()){t.app.log("viewport:_refreshChart()","Invalid attempt to refresh chart before completion.");return}var n=e.id;this._removeChart(n);var r="#"+n,i=$(this._template({id:r}));this.portlet.append(i);var s=d3.select(r+" svg");this.list[n]={svg:s,$el:i},this.showChart(n),e.off("change:state"),e.on("change:state",function(){var t=i.find("#info"),n=t.find("#icon");n.removeClass(),t.show(),t.find("#text").html(e.get("state_info"));var r=e.get("state");switch(r){case"ok":t.hide();break;case"failed":n.addClass("fa fa-warning");break;default:n.addClass("fa fa-spinner fa-spin")}}),e.state("wait","Please wait...");var o=e.get("type"),u=this.app.types.get(o),t=this;require(["plugin/charts/"+o+"/"+o],function(n){var r=new n(t.app,{svg:s}),i=u.mode;i=="execute"?t.app.jobs.submit(e,t._defaultRequestString(e),function(){r.draw(e,t._defaultRequestDictionary(e))}):r.draw(e,t._defaultRequestDictionary(e))})},_removeChart:function(e){var t=this.list[e];t&&(t.svg.remove(),t.$el.remove())},_template:function(e){return'<div id="'+e.id.substr(1)+'" class="item">'+'<span id="info">'+'<span id="icon" style="font-size: 1.2em; display: inline-block;"/>'+'<span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/>'+"</span>"+'<svg style="height: auto;"/>'+"</div>"},_defaultRequestString:function(e){var t=this.app.types.get(e.get("type")),n="",r=0;return e.groups.each(function(e){for(var i in t.columns)n+=i+"_"+ ++r+":"+(parseInt(e.get(i))+1)+", "}),n.substring(0,n.length-2)},_defaultRequestDictionary:function(e){var t=this.app.types.get(e.get("type")),n={id:e.get("dataset_id"),groups:[]},r=0;return e.groups.each(function(e){var i={};for(var s in t.columns)i[s]=e.get(s);n.groups.push({key:++r+":"+e.get("key"),columns:i})}),n}})}),define("plugin/views/charts",["mvc/ui/ui-portlet","plugin/library/ui-table","plugin/library/ui","utils/utils","plugin/models/group","plugin/views/viewport"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(i,o){this.app=i,this.viewport_view=new s(i),this.table=new t({content:"Add charts to this table.",ondblclick:function(e){var t=u.app.charts.get(e);u.app.chart.copy(t),u.hide(),u.app.chart_view.$el.show()},onchange:function(e){var t=u.app.charts.get(e);u.app.config.set("title",t.get("title")),u.viewport_view.showChart(e)}});var u=this;this.portlet=new e.View({icon:"fa-list",title:"List of created charts:",height:100,operations:{"new":new n.ButtonIcon({icon:"fa-magic",tooltip:"Create a new Chart",title:"New",onclick:function(){u.hide(),u.app.chart.reset(),u.app.chart_view.$el.show()}}),"delete":new n.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this Chart",title:"Delete",onclick:function(){var e=u.table.value();if(!e)return;var t=u.app.charts.get(e);u.app.modal.show({title:"Are you sure?",body:'The selected chart "'+t.get("title")+'" will be irreversibly deleted.',buttons:{Cancel:function(){u.app.modal.hide()},Delete:function(){u.app.modal.hide(),u.app.charts.remove(e)}}})}})}}),this.portlet.append(this.table.$el),this.app.options.config.widget||this.$el.append(this.portlet.$el),this.$el.append(r.wrap("")),this.$el.append(this.viewport_view.$el);var u=this;this.app.charts.on("add",function(e){u._addChart(e)}),this.app.charts.on("remove",function(e){u._removeChart(e)}),this.app.charts.on("change",function(e){u._changeChart(e)})},hide:function(){$(".tooltip").hide(),this.$el.hide()},_addChart:function(e){this.table.add(e.get("title"));var t=this.app.types.get(e.get("type"));this.table.add(t.title),this.table.add("Last change: "+e.get("date")),this.table.prepend(e.get("id")),this.table.value(e.get("id"))},_removeChart:function(e){this.table.remove(e.id),this.table.size()==0?(this.hide(),this.app.chart.reset(),this.app.chart_view.$el.show()):this.table.value(this.app.charts.last().id)},_changeChart:function(e){e.get("type")&&(this._addChart(e),this.table.value(e.id))}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,list:{},$nav:null,$content:null,first_tab:null,optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom"}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=e.id,n={$title:$(this._template_tab(e)),$content:$(this._template_tab_content(e)),removable:e.ondel?!0:!1};this.list[t]=n,this.options.onnew?this.$nav.find("#new-tab").before(n.$title):this.$nav.append(n.$title),n.$content.append(e.$el),this.$content.append(n.$content),_.size(this.list)==1&&(n.$title.addClass("active"),n.$content.addClass("active"),this.first_tab=t);if(e.ondel){var r=n.$title.find("#delete");r.tooltip({title:"Delete this tab",placement:"bottom"}),r.on("click",function(){return r.tooltip("destroy"),e.ondel(),!1})}e.onclick&&n.$title.on("click",function(){e.onclick()})},del:function(e){var t=this.list[e];t.$title.remove(),t.$content.remove(),delete t,this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list){var t=this.list[e];t.removable&&this.del(e)}},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&this.list[e].$title.find("a").tab("show")},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.list[e].$title.find("#text");return t&&n.html(t),n.html()},_template:function(e){return'<div class="tabbable tabs-left"><ul class="tab-navigation nav nav-tabs"/><div class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i style="font-size: 0.8em; margin-right: 5px;" class="fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="title-'+e.id+'">'+'<a title="" href="#tab-'+e.id+'" data-toggle="tab" data-original-title="">'+'<span id="text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" style="font-size: 0.8em; margin-left: 5px; cursor: pointer;" class="fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"ok",state_info:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state_info",t),this.set("state",e)},ready:function(){return this.get("state")=="ok"||this.get("state")=="failed"}})}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({columns:[],initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(){s.group.set("key",s.group_key.value())}}),this.table=new e({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.app.types.get(n);this.table.removeAll();var s={};for(var o in i.columns){var u=this.group.get(o);u||this.group.set(o,0);var a=i.columns[o],f=new t.Select.View({id:"select_"+o,gid:o,onchange:function(e){r.group.set(this.gid,e)},value:u,wait:!0});this.table.add(a.title,"25%"),this.table.add(f.$el),this.table.append(o),s[o]=f}this.app.datasets.request({id:e},function(e){r.columns=[];var t=e.metadata_column_types;for(var n in t)(t[n]=="int"||t[n]=="float")&&r.columns.push({label:"Column: "+(parseInt(n)+1)+" ["+t[n]+"]",value:n});for(var n in s)s[n].update(r.columns),s[n].show()})},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({initialize:function(r){this.table_title=new t.Label({title:r.title}),this.table=new e({content:r.content});var i=$("<div/>");i.append(n.wrap(this.table_title.$el)),i.append(n.wrap(this.table.$el)),this.setElement(i)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.removeAll();for(var n in e)this._add(n,e[n],t)},_add:function(e,n,r){var i=null,s=n.type;switch(s){case"text":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"select":i=new t.Select.View({data:n.data,onchange:function(){r.set(e,i.value())}});break;case"slider":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"separator":i=$("<div/>");break;default:console.log("ui-table-form:_add","Unknown setting type ("+n.type+")");return}if(s!="separator"){r.get(e)||r.set(e,n.init),i.value(r.get(e));var o=$("<div/>");o.append(i.$el),o.append('<div class="toolParamHelp" style="font-size: 0.9em;">'+n.info+"</div>"),this.table.add('<span style="white-space: nowrap;">'+n.title+"</span>","25%"),this.table.add(o)}else this.table.add('<h6 style="white-space: nowrap;">'+n.title+":<h6/>"),this.table.add($("<div/>"));this.table.append(e)}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View({title:"Chart options:",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refreshTable()})},_refreshTable:function(){var e=this.chart.get("type");if(!e)return;var t=this.app.types.get(e);this.form.title(t.title+":"),this.form.update(t.settings,this.chart.settings)}})}),define("plugin/views/chart",["mvc/ui/ui-tabs","plugin/library/ui-table","plugin/library/ui","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings"],function(e,t,n,r,i,s,o,u){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(i,s){this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault);var o=this;this.table=new t({header:!1,onconfirm:function(e){o.chart.groups.length>0?o.app.modal.show({title:"Switching to another chart type?",body:"If you continue your settings and selections will be reseted.",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o.table.value(e)}}}):o.table.value(e)},onchange:function(e){o.chart.groups.reset(),o.chart.settings.clear(),o.chart.set({type:e})},ondblclick:function(e){o.tabs.show("settings")},content:"No chart types available"});var a=0,f=i.types.attributes;for(var l in f){var c=f[l];this.table.add(++a+"."),this.table.add(c.title),this.table.append(l)}this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)},operations:{save:new n.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o.chart.groups.length==0&&o._addGroupModel(),o._saveChart(),o.hide(),o.app.charts_view.$el.show()}}),back:new n.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Return",onclick:function(){o.hide(),o.app.charts_view.$el.show()}})}}),this.title=new n.Input({placeholder:"Chart title",onchange:function(){o.app.config.set("title",o.title.value())}});var h=$("<div/>");h.append(r.wrap((new n.Label({title:"Provide a chart title:"})).$el)),h.append(r.wrap(this.title.$el)),h.append(r.wrap((new n.Label({title:"Select a chart type:"})).$el)),h.append(r.wrap(this.table.$el)),this.tabs.add({id:"main",title:"Start",$el:h}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.setElement(this.tabs.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o.title.value(e.get("title")),o.app.config.set("title",e.get("title"))}),this.chart.on("change:type",function(e){o.table.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.charts.on("add",function(e){o.tabs.showOperation("back")}),this.app.charts.on("remove",function(e){o.app.charts.length==0&&o.tabs.hideOperation("back")}),this.app.charts.on("reset",function(e){o.tabs.hideOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Chart data"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e}),r=t.chart.groups.length;this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey()},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey()},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","bardiagram"),this.chart.set("dataset_id",this.app.options.dataset.id),this.chart.set("dataset_hid",this.app.options.dataset.hid),this.chart.set("history_id",this.app.options.dataset.history_id),this.chart.set("title","New Chart")},_saveChart:function(){this.chart.set({type:this.table.value(),title:this.title.value(),date:r.time()});var e=this.app.charts.get(this.chart.id);e?e.copy(this.chart):(e=this.chart.clone(),e.copy(this.chart),this.app.charts.add(e)),e.trigger("redraw",e)}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e3,query_timeout:500,title:"Create a new chart"}})}),define("plugin/models/charts",["plugin/models/chart"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/charts/_nvd3/config",[],function(){return{title:"",columns:{y:{title:"Values for y-axis"}},settings:{separator_label:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"f",data:[{label:"-- Do not show values --",value:"hide"},{label:"Float",value:"f"},{label:"Exponent",value:"e"},{label:"Integer",value:"d"},{label:"Percentage",value:"p"},{label:"Rounded",value:"r"},{label:"SI-prefix",value:"s"}]},x_axis_tick:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:".1",data:[{label:"0.00001",value:".5"},{label:"0.0001",value:".4"},{label:"0.001",value:".3"},{label:"0.01",value:".2"},{label:"0.1",value:".1"},{label:"1",value:"1"}]},separator_tick:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"f",data:[{label:"-- Do not show values --",value:"hide"},{label:"Float",value:"f"},{label:"Exponent",value:"e"},{label:"Integer",value:"d"},{label:"Percentage",value:"p"},{label:"Rounded",value:"r"},{label:"SI-prefix",value:"s"}]},y_axis_tick:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:".1",data:[{label:"0.00001",value:".5"},{label:"0.0001",value:".4"},{label:"0.001",value:".3"},{label:"0.01",value:".2"},{label:"0.1",value:".1"},{label:"1",value:"1"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"select",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),define("plugin/charts/bardiagram/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Bar diagram"})}),define("plugin/charts/histogram/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",mode:"execute",columns:{y:{title:"Observations"}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"},y_axis_tick:{init:".3"},separator_custom:{title:"Advanced",type:"separator"},bin_size:{title:"Number of bins",info:"Provide the number of histogram bins. The parsed data will be evenly distributed into bins according to the minimum and maximum values of the dataset.",type:"slider",init:10,min:10,max:1e3}}})}),define("plugin/charts/horizontal/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Bar diagram (horizontal)",settings:{x_axis_type:{init:"hide"}}})}),define("plugin/charts/line/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Line chart"})}),define("plugin/charts/linewithfocus/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus"})}),define("plugin/charts/piechart/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Pie chart"})}),define("plugin/charts/scatterplot/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",columns:{x:{title:"Values for x-axis"}}})}),define("plugin/charts/stackedarea/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Stacked area"})}),define("plugin/charts/types",["plugin/charts/bardiagram/config","plugin/charts/histogram/config","plugin/charts/horizontal/config","plugin/charts/line/config","plugin/charts/linewithfocus/config","plugin/charts/piechart/config","plugin/charts/scatterplot/config","plugin/charts/stackedarea/config"],function(e,t,n,r,i,s,o,u){return Backbone.Model.extend({defaults:{bardiagram:e,horizontal:n,histogram:t,line:r,linewithfocus:i,piechart:s,scatterplot:o,stackedarea:u}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/views/charts","plugin/views/chart","plugin/models/config","plugin/models/chart","plugin/models/charts","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c){return Backbone.View.extend({initialize:function(n){this.options=n,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new a,this.jobs=new i(this),this.types=new c,this.chart=new f,this.charts=new l,this.datasets=new s(this),this.charts_view=new o(this),this.chart_view=new u(this),this.options.config.widget?this.portlet=$("<div></div>"):this.portlet=new t.View({icon:"fa-bar-chart-o"}),this.portlet.append(this.charts_view.$el),this.portlet.append(this.chart_view.$el),this.options.config.widget?this.setElement(this.portlet):this.setElement(this.portlet.$el),this.charts_view.$el.hide();var r=this;this.config.on("change:title",function(){r._refreshTitle()}),this.render()},render:function(){this._refreshTitle()},_refreshTitle:function(){var e=this.config.get("title");e&&(e=" - "+e),this.portlet.title("Charts"+e)},execute:function(e){},onunload:function(){},log:function(e,t){console.log(e+" "+t)}})});
\ No newline at end of file
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/library/table.js
--- a/config/plugins/visualizations/charts/static/library/table.js
+++ /dev/null
@@ -1,202 +0,0 @@
-// dependencies
-define(['utils/utils'], function(Utils) {
-
-// return
-return Backbone.View.extend(
-{
- // current row
- row: null,
-
- // count rows
- row_count: 0,
-
- // defaults options
- optionsDefault: {
- content : 'No content available.',
- onchange : null,
- ondblclick : null,
- onconfirm : null
- },
-
- // events
- events : {
- 'click' : '_onclick',
- 'dblclick' : '_ondblclick'
- },
-
- // first
- first: true,
-
- // initialize
- initialize : function(options) {
- // configure options
- this.options = Utils.merge(options, this.optionsDefault);
-
- // create new element
- var $el = $(this._template(options));
-
- // link sub-elements
- this.$thead = $el.find('thead');
- this.$tbody = $el.find('tbody');
- this.$tmessage = $el.find('tmessage');
-
- // set element
- this.setElement($el);
-
- // initialize row
- this.row = $('<tr></tr>');
- },
-
- // add header cell
- addHeader: function($el) {
- var wrapper = $('<th></th>');
- wrapper.append($el);
- this.row.append(wrapper);
- },
-
- // header
- appendHeader: function() {
- // append header row
- this.$thead.append(this.row);
-
- // row
- this.row = $('<tr></tr>');
- },
-
- // add row cell
- add: function($el) {
- var wrapper = $('<td></td>');
- wrapper.append($el);
- this.row.append(wrapper);
- },
-
- // append
- append: function(id) {
- this._commit(id);
- },
-
- // prepend
- prepend: function(id) {
- this._commit(id, true);
- },
-
- // remove
- remove: function(id) {
- var item = this.$tbody.find('#' + id);
- if (item.length > 0) {
- item.remove();
- this.row_count--;
- this._refresh();
- }
- },
-
- // remove
- removeAll: function() {
- this.$tbody.html('');
- this.row_count = 0;
- this._refresh();
- },
-
- // value
- value: function(new_value) {
- // get current id/value
- this.before = this.$tbody.find('.current').attr('id');
-
- // check if new_value is defined
- if (new_value !== undefined) {
- this.$tbody.find('tr').removeClass('current');
- if (new_value) {
- this.$tbody.find('#' + new_value).addClass('current');
- }
- }
-
- // get current id/value
- var after = this.$tbody.find('.current').attr('id');
- if(after === undefined) {
- return null;
- } else {
- // fire onchange
- if (after != this.before && this.options.onchange) {
- this.options.onchange(new_value);
- }
-
- // return current value
- return after;
- }
- },
-
- // size
- size: function() {
- return this.$tbody.find('tr').length;
- },
-
- // commit
- _commit: function(id, prepend) {
- // remove previous item with same id
- this.remove(id);
-
- // add
- this.row.attr('id', id);
-
- // add row
- if (prepend) {
- this.$tbody.prepend(this.row);
- } else {
- this.$tbody.append(this.row);
- }
-
- // row
- this.row = $('<tr></tr>');
-
- // row count
- this.row_count++;
- this._refresh();
- },
-
- // onclick
- _onclick: function(e) {
- // get values
- var old_value = this.value();
- var new_value = $(e.target).closest('tr').attr('id');
-
- // check equality
- if (new_value && old_value != new_value) {
- if (this.options.onconfirm) {
- this.options.onconfirm(new_value);
- } else {
- this.value(new_value);
- }
- }
- },
-
- // ondblclick
- _ondblclick: function(e) {
- var value = this.value();
- if (value && this.options.ondblclick) {
- this.options.ondblclick(value);
- }
- },
-
- // refresh
- _refresh: function() {
- if (this.row_count == 0) {
- this.$tmessage.show();
- } else {
- this.$tmessage.hide();
- }
- },
-
- // load html template
- _template: function(options)
- {
- return '<div>' +
- '<table class="grid">' +
- '<thead></thead>' +
- '<tbody style="cursor: pointer;"></tbody>' +
- '</table>' +
- '<tmessage>' + options.content + '</tmessage>' +
- '<div>';
- }
-});
-
-});
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/library/ui-select.js
--- /dev/null
+++ b/config/plugins/visualizations/charts/static/library/ui-select.js
@@ -0,0 +1,224 @@
+// dependencies
+define(['utils/utils'], function(Utils) {
+
+// plugin
+var View = Backbone.View.extend(
+{
+ // options
+ optionsDefault: {
+ id : '',
+ cls : '',
+ empty : 'No data available',
+ visible : true,
+ wait : false
+ },
+
+ // value
+ selected : null,
+
+ // initialize
+ initialize : function(options) {
+ // configure options
+ this.options = Utils.merge(options, this.optionsDefault);
+
+ // create new element
+ this.setElement(this._template(this.options));
+
+ // link elements
+ this.$select = this.$el.find('#select');
+ this.$icon = this.$el.find('#icon');
+
+ // initial value
+ this.selected = this.options.value;
+
+ // add change event
+ var self = this;
+ if (this.options.onchange) {
+ this.$select.on('change', function() {
+ self.value(self.$select.val());
+ });
+ }
+
+ // refresh
+ this._refresh();
+
+ // show/hide
+ if (!this.options.visible) {
+ this.hide();
+ }
+
+ // wait
+ if (this.options.wait) {
+ this.wait();
+ } else {
+ this.show();
+ }
+ },
+
+ // value
+ value : function (new_value) {
+
+ // get current id/value
+ var before = this.selected;
+
+ // check if new_value is defined
+ if (new_value !== undefined) {
+ this.selected = new_value;
+ this.$select.val(new_value);
+ }
+
+ // get current id/value
+ var after = this.selected;
+ if(after) {
+ // fire onchange
+ if ((after != before && this.options.onchange)) {
+ this.options.onchange(after);
+ }
+ }
+
+ // return
+ return after;
+ },
+
+ // label
+ text : function () {
+ return this.$select.find('option:selected').text();
+ },
+
+ // show
+ show: function() {
+ this.$icon.removeClass();
+ this.$icon.addClass('fa fa-caret-down');
+ this.$select.show();
+ this.$el.show();
+ },
+
+ // hide
+ hide: function() {
+ this.$el.hide();
+ },
+
+ // wait
+ wait: function() {
+ this.$icon.removeClass();
+ this.$icon.addClass('fa fa-spinner fa-spin');
+ this.$select.hide();
+ },
+
+ // disabled
+ disabled: function() {
+ return this.$select.is(':disabled');
+ },
+
+ // enable
+ enable: function() {
+ this.$select.prop('disabled', false);
+ },
+
+ // disable
+ disable: function() {
+ this.$select.prop('disabled', true);
+ },
+
+ // add
+ add: function(options) {
+ // add options
+ this.$select.append(this._templateOption(options));
+
+ // refresh
+ this._refresh();
+ },
+
+ // remove
+ del: function(value) {
+ // remove option
+ this.$select.find('option[value=' + value + ']').remove();
+ this.$select.trigger('change');
+
+ // refresh
+ this._refresh();
+ },
+
+ // render
+ update: function(options) {
+ // remove all options
+ this.$select.find('option').remove();
+
+ // add new options
+ for (var key in options) {
+ this.$select.append(this._templateOption(options[key]));
+ }
+
+ // select first option if nothing else is selected
+ if (!this.selected && options.length > 0) {
+ this.value(options[0].value);
+ }
+
+ // refresh
+ this._refresh();
+ },
+
+ // refresh
+ _refresh: function() {
+ // remove placeholder
+ this.$select.find('option[value=null]').remove();
+
+ // count remaining entries
+ var remaining = this.$select.find('option').length;
+ if (remaining == 0) {
+ // append placeholder
+ this.$select.append(this._templateOption({value : 'null', label : this.options.empty}));
+ this.disable();
+ } else {
+ // enable select field
+ this.enable();
+
+ // update selected value
+ if (this.selected) {
+ this.$select.val(this.selected);
+ }
+ }
+ },
+
+ // exists
+ _exists: function(value) {
+ // check if selected value exists
+ return 0 != this.$select.find('option[value=' + value + ']').length;
+ },
+
+ // option
+ _templateOption: function(options) {
+ return '<option value="' + options.value + '">' + options.label + '</option>';
+ },
+
+ // element
+ _template: function(options) {
+ var tmpl = '<div id="' + options.id + '" class="styled-select">' +
+ '<div class="button">' +
+ '<i id="icon"/>' +
+ '</div>' +
+ '<select id="select" class="select ' + options.cls + ' ' + options.id + '">';
+ for (key in options.data) {
+ // options
+ var item = options.data[key];
+
+ // identify selected value
+ var tag = '';
+ if (item.value == options.value || item.value == '') {
+ tag = 'selected';
+ }
+
+ // add template string
+ tmpl += '<option value="' + item.value + '" ' + tag + '>' + item.label + '</option>';
+ }
+ tmpl += '</select>' +
+ '</div>';
+ return tmpl;
+ }
+});
+
+return {
+ View: View
+}
+
+});
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/library/ui-table-form.js
--- a/config/plugins/visualizations/charts/static/library/ui-table-form.js
+++ b/config/plugins/visualizations/charts/static/library/ui-table-form.js
@@ -1,5 +1,5 @@
// dependencies
-define(['plugin/library/table', 'plugin/library/ui', 'utils/utils'],
+define(['plugin/library/ui-table', 'plugin/library/ui', 'utils/utils'],
function(Table, Ui, Utils) {
// widget
@@ -95,7 +95,7 @@
$input.append('<div class="toolParamHelp" style="font-size: 0.9em;">' + settings_def.info + '</div>');
// add row to table
- this.table.add('<span style="white-space: nowrap;">' + settings_def.title + '</span>');
+ this.table.add('<span style="white-space: nowrap;">' + settings_def.title + '</span>', '25%');
this.table.add($input);
} else {
this.table.add('<h6 style="white-space: nowrap;">' + settings_def.title + ':<h6/>');
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/library/ui-table.js
--- /dev/null
+++ b/config/plugins/visualizations/charts/static/library/ui-table.js
@@ -0,0 +1,205 @@
+// dependencies
+define(['utils/utils'], function(Utils) {
+
+// return
+return Backbone.View.extend(
+{
+ // current row
+ row: null,
+
+ // count rows
+ row_count: 0,
+
+ // defaults options
+ optionsDefault: {
+ content : 'No content available.',
+ onchange : null,
+ ondblclick : null,
+ onconfirm : null
+ },
+
+ // events
+ events : {
+ 'click' : '_onclick',
+ 'dblclick' : '_ondblclick'
+ },
+
+ // first
+ first: true,
+
+ // initialize
+ initialize : function(options) {
+ // configure options
+ this.options = Utils.merge(options, this.optionsDefault);
+
+ // create new element
+ var $el = $(this._template(options));
+
+ // link sub-elements
+ this.$thead = $el.find('thead');
+ this.$tbody = $el.find('tbody');
+ this.$tmessage = $el.find('tmessage');
+
+ // set element
+ this.setElement($el);
+
+ // initialize row
+ this.row = $('<tr></tr>');
+ },
+
+ // add header cell
+ addHeader: function($el) {
+ var wrapper = $('<th></th>');
+ wrapper.append($el);
+ this.row.append(wrapper);
+ },
+
+ // header
+ appendHeader: function() {
+ // append header row
+ this.$thead.append(this.row);
+
+ // row
+ this.row = $('<tr></tr>');
+ },
+
+ // add row cell
+ add: function($el, width) {
+ var wrapper = $('<td></td>');
+ if (width) {
+ wrapper.css('width', width);
+ }
+ wrapper.append($el);
+ this.row.append(wrapper);
+ },
+
+ // append
+ append: function(id) {
+ this._commit(id);
+ },
+
+ // prepend
+ prepend: function(id) {
+ this._commit(id, true);
+ },
+
+ // remove
+ remove: function(id) {
+ var item = this.$tbody.find('#' + id);
+ if (item.length > 0) {
+ item.remove();
+ this.row_count--;
+ this._refresh();
+ }
+ },
+
+ // remove
+ removeAll: function() {
+ this.$tbody.html('');
+ this.row_count = 0;
+ this._refresh();
+ },
+
+ // value
+ value: function(new_value) {
+ // get current id/value
+ this.before = this.$tbody.find('.current').attr('id');
+
+ // check if new_value is defined
+ if (new_value !== undefined) {
+ this.$tbody.find('tr').removeClass('current');
+ if (new_value) {
+ this.$tbody.find('#' + new_value).addClass('current');
+ }
+ }
+
+ // get current id/value
+ var after = this.$tbody.find('.current').attr('id');
+ if(after === undefined) {
+ return null;
+ } else {
+ // fire onchange
+ if (after != this.before && this.options.onchange) {
+ this.options.onchange(new_value);
+ }
+
+ // return current value
+ return after;
+ }
+ },
+
+ // size
+ size: function() {
+ return this.$tbody.find('tr').length;
+ },
+
+ // commit
+ _commit: function(id, prepend) {
+ // remove previous item with same id
+ this.remove(id);
+
+ // add
+ this.row.attr('id', id);
+
+ // add row
+ if (prepend) {
+ this.$tbody.prepend(this.row);
+ } else {
+ this.$tbody.append(this.row);
+ }
+
+ // row
+ this.row = $('<tr></tr>');
+
+ // row count
+ this.row_count++;
+ this._refresh();
+ },
+
+ // onclick
+ _onclick: function(e) {
+ // get values
+ var old_value = this.value();
+ var new_value = $(e.target).closest('tr').attr('id');
+
+ // check equality
+ if (new_value && old_value != new_value) {
+ if (this.options.onconfirm) {
+ this.options.onconfirm(new_value);
+ } else {
+ this.value(new_value);
+ }
+ }
+ },
+
+ // ondblclick
+ _ondblclick: function(e) {
+ var value = this.value();
+ if (value && this.options.ondblclick) {
+ this.options.ondblclick(value);
+ }
+ },
+
+ // refresh
+ _refresh: function() {
+ if (this.row_count == 0) {
+ this.$tmessage.show();
+ } else {
+ this.$tmessage.hide();
+ }
+ },
+
+ // load html template
+ _template: function(options)
+ {
+ return '<div>' +
+ '<table class="grid">' +
+ '<thead></thead>' +
+ '<tbody style="cursor: pointer;"></tbody>' +
+ '</table>' +
+ '<tmessage>' + options.content + '</tmessage>' +
+ '<div>';
+ }
+});
+
+});
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/library/ui.js
--- a/config/plugins/visualizations/charts/static/library/ui.js
+++ b/config/plugins/visualizations/charts/static/library/ui.js
@@ -1,5 +1,5 @@
// dependencies
-define(['utils/utils', 'plugin/library/ui.select'], function(Utils, Select) {
+define(['utils/utils', 'plugin/library/ui-select'], function(Utils, Select) {
// plugin
var Label = Backbone.View.extend(
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/library/ui.select.js
--- a/config/plugins/visualizations/charts/static/library/ui.select.js
+++ /dev/null
@@ -1,220 +0,0 @@
-// dependencies
-define(['utils/utils'], function(Utils) {
-
-// plugin
-var View = Backbone.View.extend(
-{
- // options
- optionsDefault: {
- id : '',
- cls : '',
- empty : 'No data available',
- visible : true,
- wait : false
- },
-
- // value
- selected : null,
-
- // initialize
- initialize : function(options) {
- // configure options
- this.options = Utils.merge(options, this.optionsDefault);
-
- // create new element
- this.setElement(this._template(this.options));
-
- // link elements
- this.$select = this.$el.find('#select');
- this.$wait = this.$el.find('#wait');
-
- // initial value
- this.selected = this.options.value;
-
- // add change event
- var self = this;
- if (this.options.onchange) {
- this.$select.on('change', function() {
- self.value(self.$select.val());
- });
- }
-
- // refresh
- this._refresh();
-
- // show/hide
- if (!this.options.visible) {
- this.hide();
- }
-
- // wait
- if (this.options.wait) {
- this.wait();
- }
- },
-
- // value
- value : function (new_value) {
-
- // get current id/value
- var before = this.selected;
-
- // check if new_value is defined
- if (new_value !== undefined) {
- this.selected = new_value;
- this.$select.val(new_value);
- }
-
- // get current id/value
- var after = this.selected;
- if(after) {
- // fire onchange
- if ((after != before && this.options.onchange)) {
- this.options.onchange(after);
- }
- }
-
- // return
- return after;
- },
-
- // label
- text : function () {
- return this.$select.find('option:selected').text();
- },
-
- // show
- show: function() {
- this.$wait.hide();
- this.$select.show();
- this.$el.show();
- },
-
- // hide
- hide: function() {
- this.$el.hide();
- },
-
- // wait
- wait: function() {
- this.$select.hide();
- this.$wait.css('display','inline-block');
- },
-
- // disabled
- disabled: function() {
- return this.$select.is(':disabled');
- },
-
- // enable
- enable: function() {
- this.$select.prop('disabled', false);
- },
-
- // disable
- disable: function() {
- this.$select.prop('disabled', true);
- },
-
- // add
- add: function(options) {
- // add options
- this.$select.append(this._templateOption(options));
-
- // refresh
- this._refresh();
- },
-
- // remove
- del: function(value) {
- // remove option
- this.$select.find('option[value=' + value + ']').remove();
- this.$select.trigger('change');
-
- // refresh
- this._refresh();
- },
-
- // render
- update: function(options) {
- // remove all options
- this.$select.find('option').remove();
-
- // add new options
- for (var key in options) {
- this.$select.append(this._templateOption(options[key]));
- }
-
- // select first option if nothing else is selected
- if (!this.selected && options.length > 0) {
- this.value(options[0].value);
- }
-
- // refresh
- this._refresh();
- },
-
- // refresh
- _refresh: function() {
- // remove placeholder
- this.$select.find('option[value=null]').remove();
-
- // count remaining entries
- var remaining = this.$select.find('option').length;
- if (remaining == 0) {
- // append placeholder
- this.$select.append(this._templateOption({value : 'null', label : this.options.empty}));
- this.disable();
- } else {
- // enable select field
- this.enable();
-
- // update selected value
- if (this.selected) {
- //if (this._exists(selected)) {
- this.$select.val(this.selected);
- //}
- }
- }
- },
-
- // exists
- _exists: function(value) {
- // check if selected value exists
- return 0 != this.$select.find('option[value=' + value + ']').length;
- },
-
- // option
- _templateOption: function(options) {
- return '<option value="' + options.value + '">' + options.label + '</option>';
- },
-
- // element
- _template: function(options) {
- var tmpl = '<div id="' + options.id + '">' +
- '<i id="wait" class="fa fa-spinner fa-spin" style="font-size: 1.2em; display: none;"/>' +
- '<select id="select" class="select ' + options.cls + ' ' + options.id + '">';
- for (key in options.data) {
- // options
- var item = options.data[key];
-
- // identify selected value
- var tag = '';
- if (item.value == options.value || item.value == '') {
- tag = 'selected';
- }
-
- // add template string
- tmpl += '<option value="' + item.value + '" ' + tag + '>' + item.label + '</option>';
- }
- tmpl += '</select>' +
- '</div>';
- return tmpl;
- }
-});
-
-return {
- View: View
-}
-
-});
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/views/chart.js
--- a/config/plugins/visualizations/charts/static/views/chart.js
+++ b/config/plugins/visualizations/charts/static/views/chart.js
@@ -1,5 +1,5 @@
// dependencies
-define(['mvc/ui/ui-tabs', 'plugin/library/table', 'plugin/library/ui', 'utils/utils',
+define(['mvc/ui/ui-tabs', 'plugin/library/ui-table', 'plugin/library/ui', 'utils/utils',
'plugin/models/chart', 'plugin/models/group',
'plugin/views/group', 'plugin/views/settings'],
function(Tabs, Table, Ui, Utils, Chart, Group, GroupView, SettingsView) {
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/views/charts.js
--- a/config/plugins/visualizations/charts/static/views/charts.js
+++ b/config/plugins/visualizations/charts/static/views/charts.js
@@ -1,5 +1,5 @@
// dependencies
-define(['mvc/ui/ui-portlet', 'plugin/library/table', 'plugin/library/ui', 'utils/utils', 'plugin/models/group', 'plugin/views/viewport',], function(Portlet, Table, Ui, Utils, Group, ViewportView) {
+define(['mvc/ui/ui-portlet', 'plugin/library/ui-table', 'plugin/library/ui', 'utils/utils', 'plugin/models/group', 'plugin/views/viewport',], function(Portlet, Table, Ui, Utils, Group, ViewportView) {
// widget
return Backbone.View.extend(
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab config/plugins/visualizations/charts/static/views/group.js
--- a/config/plugins/visualizations/charts/static/views/group.js
+++ b/config/plugins/visualizations/charts/static/views/group.js
@@ -1,5 +1,5 @@
// dependencies
-define(['plugin/library/table', 'plugin/library/ui', 'utils/utils'],
+define(['plugin/library/ui-table', 'plugin/library/ui', 'utils/utils'],
function(Table, Ui, Utils) {
// widget
@@ -104,7 +104,7 @@
});
// add row to table
- this.table.add(data_def.title);
+ this.table.add(data_def.title, '25%');
this.table.add(select.$el);
this.table.append(id);
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1280,6 +1280,8 @@
.upload-settings .upload-settings-cover{position:absolute;width:100%;height:100%;top:0px;left:0px;background:#fff;opacity:0.4;cursor:no-drop}
.popover-view{max-width:700px;display:none}.popover-view .popover-close{position:absolute;right:10px;top:7px;font-size:1.2em;cursor:pointer}
.popover-view .popover-title{padding:4px 10px}
+.styled-select{position:relative;height:27px;overflow:hidden;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px}.styled-select .button{position:relative;width:25px;height:inherit;float:right;border-left:1px solid #bfbfbf;font-size:1.2em;padding-left:7px;padding-top:3px;background:#f2f2f2}
+.styled-select select{position:absolute;top:0px;height:100%;width:100%;padding-left:5px;cursor:pointer;background:transparent;border:0;border-radius:0;-webkit-appearance:none}
.libraryRow{background-color:#ebd9b2}
.datasetHighlighted{background-color:#f9f9f9}
.libraryItemDeleted-True{font-style:italic}
diff -r 1876b133576e3d1386e775f9f40a46fbd15bde51 -r c04776e03a54ef7d6d248541b008adf0491288ab static/style/src/less/ui.less
--- a/static/style/src/less/ui.less
+++ b/static/style/src/less/ui.less
@@ -14,3 +14,37 @@
padding: 4px 10px;
}
}
+
+.styled-select {
+ position: relative;
+ height: 27px;
+ overflow: hidden;
+ border: 1px solid @border-default-color;
+ -moz-border-radius: @border-radius-base;
+ border-radius: @border-radius-base;
+
+ .button {
+ position: relative;
+ width: 25px;
+ height: inherit;
+ float: right;
+ border-left: 1px solid @border-default-color;
+ font-size: 1.2em;
+ padding-left: 7px;
+ padding-top: 3px;
+ background: @btn-default-bg;
+ }
+
+ select {
+ position: absolute;
+ top: 0px;
+ height: 100%;
+ width: 100%;
+ padding-left:5px;
+ cursor: pointer;
+ background: transparent;
+ border: 0;
+ border-radius: 0;
+ -webkit-appearance: none;
+ }
+}
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Charts: Add legend option
by commits-noreply＠bitbucket.org 10 Mar '14
by commits-noreply＠bitbucket.org 10 Mar '14
10 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/1876b133576e/
Changeset: 1876b133576e
User: guerler
Date: 2014-03-09 18:22:39
Summary: Charts: Add legend option
Affected #: 3 files
diff -r 9098e1c050652c0828cb5bf79f835c2ca0e943d8 -r 1876b133576e3d1386e775f9f40a46fbd15bde51 config/plugins/visualizations/charts/static/build-app.js
--- a/config/plugins/visualizations/charts/static/build-app.js
+++ b/config/plugins/visualizations/charts/static/build-app.js
@@ -3,4 +3,4 @@
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n=$(this.el).find(".root"),r=this;n.on("click",function(e){e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide()},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t='<div id="'+e.id+'" class="button-menu btn-group">'+'<button type="button" class="root btn btn-default dropdown-toggle" data-toggle="dropdown">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),"</button></div>",t}}),c=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.options.onchange&&this.$el.on("input",function(){n.options.onchange()})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="form-control">'}});return{Label:n,Button:r,Icon:i,ButtonIcon:s,Input:c,Anchor:o,Message:u,Searchbox:a,Title:f,Select:t,ButtonMenu:l}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},submit:function(t,n,r){var i=this,s=t.id,o=t.get("type"),u=this.app.types.get(o);data={tool_id:"rkit",history_id:t.get("history_id"),inputs:{input:t.get("dataset_hid"),module:o,options:n}};var a=t.get("dataset_id_job");a&&e.request("PUT",config.root+"api/histories/"+t.get("history_id")+"/contents/"+a,{deleted:!0}),t.state("submit","Sending job request..."),e.request("POST",config.root+"api/tools",data,function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response.");else{Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshHdas();var n=e.outputs[0];t.state("queued","Job has been queued..."),t.set("dataset_id_job",n.id),i._loop(n.id,function(e){switch(e.state){case"ok":return t.state("success","Job completed successfully..."),r(e),!0;case"error":return t.state("failed","Job has failed. Please check the history for details."),!0;case"running":return t.state("running","Job is running..."),!1}})}},function(e){t.state("failed","Job submission failed. Please make sure that 'R-kit' is installed.")})},_loop:function(t,n){var r=this;e.request("GET",config.root+"api/jobs/"+t,{},function(e){n(e)||setTimeout(function(){r._loop(t,n)},r.app.config.get("query_timeout"))})}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(t,n,r){var i=this;if(t.groups)this._fetch(t,n);else{var s=this.list[t.id];if(s){n(s);return}e.request("GET",config.root+"api/datasets/"+t.id,{},function(e){switch(e.state){case"error":r&&r(e);break;default:i.list[t.id]=e,n(e)}})}},_fetch:function(t,n){var r=t.start?t.start:0,i=Math.abs(t.end-t.start),s=this.app.config.get("query_limit");if(!i||i>s)i=s;var o="",u={},a=0;for(var f in t.groups){var l=t.groups[f];for(var c in l.columns){var h=l.columns[c];o+=h+",",u[h]=a,a++}}if(a==0){n({});return}o=o.substring(0,o.length-1);var p=t.groups.slice(0);for(var f in p)p[f].values=[];var d=this;e.request("GET",config.root+"api/datasets/"+t.id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},function(e){for(var i in e.data){var s=e.data[i];for(var o in t.groups){var a=t.groups[o],f={x:parseInt(i)+r};for(var l in a.columns){var c=a.columns[l],h=u[c],d=s[h];if(isNaN(d)||!d)d=0;f[l]=d}p[o].values.push(f)}}n(p)})}})}),define("plugin/library/table",["utils/utils"],function(e){return Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null},events:{click:"_onclick",dblclick:"_ondblclick"},first:!0,initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e){var t=$("<td></td>");t.append(e),this.row.append(t)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},remove:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},removeAll:function(){this.$tbody.html(""),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.remove(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="grid"><thead></thead><tbody style="cursor: pointer;"></tbody></table><tmessage>'+e.content+"</tmessage>"+"<div>"}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({list:{},optionsDefault:{height:300},initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.portlet=new e.View({title:"title",height:this.options.height,overflow:"hidden",operations:{edit:new t.ButtonIcon({icon:"fa-gear",tooltip:"Customize Chart",title:"Customize"})}}),this.setElement(this.portlet.$el);var s=this;this.app.charts.on("remove",function(e){s._removeChart(e.id)}),this.app.charts.on("redraw",function(e){e.ready()?s._refreshChart(e):e.on("change:state",function(){e.ready()&&s._refreshChart(e)})})},showChart:function(e){this.show(),this.hideCharts();var t=this.list[e];if(t){var n=self.app.charts.get(e);this.portlet.title(n.get("title")),this.portlet.setOperation("edit",function(){self.app.chart.copy(n),self.app.charts_view.hide(),self.app.chart_view.$el.show()}),t.$el.show(),$(window).trigger("resize")}},hideCharts:function(){this.$el.find(".item").hide()},show:function(){$(".tooltip").hide(),this.$el.show()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshChart:function(e){var t=this;if(!e.ready()){t.app.log("viewport:_refreshChart()","Invalid attempt to refresh chart before completion.");return}var n=e.id;this._removeChart(n);var r="#"+n,i=$(this._template({id:r}));this.portlet.append(i);var s=d3.select(r+" svg");this.list[n]={svg:s,$el:i},this.showChart(n),e.off("change:state"),e.on("change:state",function(){var t=i.find("#info"),n=t.find("#icon");n.removeClass(),t.show(),t.find("#text").html(e.get("state_info"));var r=e.get("state");switch(r){case"ok":t.hide();break;case"failed":n.addClass("fa fa-warning");break;default:n.addClass("fa fa-spinner fa-spin")}}),e.state("wait","Please wait...");var o=e.get("type"),u=this.app.types.get(o),t=this;require(["plugin/charts/"+o+"/"+o],function(n){var r=new n(t.app,{svg:s}),i=u.mode;i=="execute"?t.app.jobs.submit(e,t._defaultRequestString(e),function(){r.draw(e,t._defaultRequestDictionary(e))}):r.draw(e,t._defaultRequestDictionary(e))})},_removeChart:function(e){var t=this.list[e];t&&(t.svg.remove(),t.$el.remove())},_template:function(e){return'<div id="'+e.id.substr(1)+'" class="item">'+'<span id="info">'+'<span id="icon" style="font-size: 1.2em; display: inline-block;"/>'+'<span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/>'+"</span>"+'<svg style="height: auto;"/>'+"</div>"},_defaultRequestString:function(e){var t=this.app.types.get(e.get("type")),n="",r=0;return e.groups.each(function(e){for(var i in t.columns)n+=i+"_"+ ++r+":"+(parseInt(e.get(i))+1)+", "}),n.substring(0,n.length-2)},_defaultRequestDictionary:function(e){var t=this.app.types.get(e.get("type")),n={id:e.get("dataset_id"),groups:[]},r=0;return e.groups.each(function(e){var i={};for(var s in t.columns)i[s]=e.get(s);n.groups.push({key:++r+":"+e.get("key"),columns:i})}),n}})}),define("plugin/views/charts",["mvc/ui/ui-portlet","plugin/library/table","plugin/library/ui","utils/utils","plugin/models/group","plugin/views/viewport"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(i,o){this.app=i,this.viewport_view=new s(i),this.table=new t({content:"Add charts to this table.",ondblclick:function(e){var t=u.app.charts.get(e);u.app.chart.copy(t),u.hide(),u.app.chart_view.$el.show()},onchange:function(e){var t=u.app.charts.get(e);u.app.config.set("title",t.get("title")),u.viewport_view.showChart(e)}});var u=this;this.portlet=new e.View({icon:"fa-list",title:"List of created charts:",height:100,operations:{"new":new n.ButtonIcon({icon:"fa-magic",tooltip:"Create a new Chart",title:"New",onclick:function(){u.hide(),u.app.chart.reset(),u.app.chart_view.$el.show()}}),"delete":new n.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this Chart",title:"Delete",onclick:function(){var e=u.table.value();if(!e)return;var t=u.app.charts.get(e);u.app.modal.show({title:"Are you sure?",body:'The selected chart "'+t.get("title")+'" will be irreversibly deleted.',buttons:{Cancel:function(){u.app.modal.hide()},Delete:function(){u.app.modal.hide(),u.app.charts.remove(e)}}})}})}}),this.portlet.append(this.table.$el),this.app.options.config.widget||this.$el.append(this.portlet.$el),this.$el.append(r.wrap("")),this.$el.append(this.viewport_view.$el);var u=this;this.app.charts.on("add",function(e){u._addChart(e)}),this.app.charts.on("remove",function(e){u._removeChart(e)}),this.app.charts.on("change",function(e){u._changeChart(e)})},hide:function(){$(".tooltip").hide(),this.$el.hide()},_addChart:function(e){this.table.add(e.get("title"));var t=this.app.types.get(e.get("type"));this.table.add(t.title),this.table.add("Last change: "+e.get("date")),this.table.prepend(e.get("id")),this.table.value(e.get("id"))},_removeChart:function(e){this.table.remove(e.id),this.table.size()==0?(this.hide(),this.app.chart.reset(),this.app.chart_view.$el.show()):this.table.value(this.app.charts.last().id)},_changeChart:function(e){e.get("type")&&(this._addChart(e),this.table.value(e.id))}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,list:{},$nav:null,$content:null,first_tab:null,optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom"}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=e.id,n={$title:$(this._template_tab(e)),$content:$(this._template_tab_content(e)),removable:e.ondel?!0:!1};this.list[t]=n,this.options.onnew?this.$nav.find("#new-tab").before(n.$title):this.$nav.append(n.$title),n.$content.append(e.$el),this.$content.append(n.$content),_.size(this.list)==1&&(n.$title.addClass("active"),n.$content.addClass("active"),this.first_tab=t);if(e.ondel){var r=n.$title.find("#delete");r.tooltip({title:"Delete this tab",placement:"bottom"}),r.on("click",function(){return r.tooltip("destroy"),e.ondel(),!1})}e.onclick&&n.$title.on("click",function(){e.onclick()})},del:function(e){var t=this.list[e];t.$title.remove(),t.$content.remove(),delete t,this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list){var t=this.list[e];t.removable&&this.del(e)}},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&this.list[e].$title.find("a").tab("show")},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.list[e].$title.find("#text");return t&&n.html(t),n.html()},_template:function(e){return'<div class="tabbable tabs-left"><ul class="tab-navigation nav nav-tabs"/><div class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i style="font-size: 0.8em; margin-right: 5px;" class="fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="title-'+e.id+'">'+'<a title="" href="#tab-'+e.id+'" data-toggle="tab" data-original-title="">'+'<span id="text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" style="font-size: 0.8em; margin-left: 5px; cursor: pointer;" class="fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"ok",state_info:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state_info",t),this.set("state",e)},ready:function(){return this.get("state")=="ok"||this.get("state")=="failed"}})}),define("plugin/views/group",["plugin/library/table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({columns:[],initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(){s.group.set("key",s.group_key.value())}}),this.table=new e({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.app.types.get(n);this.table.removeAll();var s={};for(var o in i.columns){var u=this.group.get(o);u||this.group.set(o,0);var a=i.columns[o],f=new t.Select.View({id:"select_"+o,gid:o,onchange:function(e){r.group.set(this.gid,e)},value:u,wait:!0});this.table.add(a.title),this.table.add(f.$el),this.table.append(o),s[o]=f}this.app.datasets.request({id:e},function(e){r.columns=[];var t=e.metadata_column_types;for(var n in t)(t[n]=="int"||t[n]=="float")&&r.columns.push({label:"Column: "+(parseInt(n)+1)+" ["+t[n]+"]",value:n});for(var n in s)s[n].update(r.columns),s[n].show()})},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({initialize:function(r){this.table_title=new t.Label({title:r.title}),this.table=new e({content:r.content});var i=$("<div/>");i.append(n.wrap(this.table_title.$el)),i.append(n.wrap(this.table.$el)),this.setElement(i)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.removeAll();for(var n in e)this._add(n,e[n],t)},_add:function(e,n,r){var i=null,s=n.type;switch(s){case"text":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"select":i=new t.Select.View({data:n.data,onchange:function(){r.set(e,i.value())}});break;case"slider":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"separator":i=$("<div/>");break;default:console.log("ui-table-form:_add","Unknown setting type ("+n.type+")");return}if(s!="separator"){r.get(e)||r.set(e,n.init),i.value(r.get(e));var o=$("<div/>");o.append(i.$el),o.append('<div class="toolParamHelp" style="font-size: 0.9em;">'+n.info+"</div>"),this.table.add('<span style="white-space: nowrap;">'+n.title+"</span>"),this.table.add(o)}else this.table.add('<h6 style="white-space: nowrap;">'+n.title+":<h6/>"),this.table.add($("<div/>"));this.table.append(e)}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View({title:"Chart options:",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refreshTable()})},_refreshTable:function(){var e=this.chart.get("type");if(!e)return;var t=this.app.types.get(e);this.form.title(t.title+":"),this.form.update(t.settings,this.chart.settings)}})}),define("plugin/views/chart",["mvc/ui/ui-tabs","plugin/library/table","plugin/library/ui","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings"],function(e,t,n,r,i,s,o,u){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(i,s){this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault);var o=this;this.table=new t({header:!1,onconfirm:function(e){o.chart.groups.length>0?o.app.modal.show({title:"Switching to another chart type?",body:"If you continue your settings and selections will be 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Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},submit:function(t,n,r){var i=this,s=t.id,o=t.get("type"),u=this.app.types.get(o);data={tool_id:"rkit",history_id:t.get("history_id"),inputs:{input:t.get("dataset_hid"),module:o,options:n}};var a=t.get("dataset_id_job");a&&e.request("PUT",config.root+"api/histories/"+t.get("history_id")+"/contents/"+a,{deleted:!0}),t.state("submit","Sending job request..."),e.request("POST",config.root+"api/tools",data,function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response.");else{Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshHdas();var n=e.outputs[0];t.state("queued","Job has been queued..."),t.set("dataset_id_job",n.id),i._loop(n.id,function(e){switch(e.state){case"ok":return t.state("success","Job completed successfully..."),r(e),!0;case"error":return t.state("failed","Job has failed. Please check the history for details."),!0;case"running":return t.state("running","Job is running..."),!1}})}},function(e){t.state("failed","Job submission failed. Please make sure that 'R-kit' is installed.")})},_loop:function(t,n){var r=this;e.request("GET",config.root+"api/jobs/"+t,{},function(e){n(e)||setTimeout(function(){r._loop(t,n)},r.app.config.get("query_timeout"))})}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(t,n,r){var i=this;if(t.groups)this._fetch(t,n);else{var s=this.list[t.id];if(s){n(s);return}e.request("GET",config.root+"api/datasets/"+t.id,{},function(e){switch(e.state){case"error":r&&r(e);break;default:i.list[t.id]=e,n(e)}})}},_fetch:function(t,n){var r=t.start?t.start:0,i=Math.abs(t.end-t.start),s=this.app.config.get("query_limit");if(!i||i>s)i=s;var o="",u={},a=0;for(var f in t.groups){var l=t.groups[f];for(var c in l.columns){var h=l.columns[c];o+=h+",",u[h]=a,a++}}if(a==0){n({});return}o=o.substring(0,o.length-1);var p=t.groups.slice(0);for(var f in p)p[f].values=[];var d=this;e.request("GET",config.root+"api/datasets/"+t.id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},function(e){for(var i in e.data){var s=e.data[i];for(var o in t.groups){var a=t.groups[o],f={x:parseInt(i)+r};for(var l in a.columns){var c=a.columns[l],h=u[c],d=s[h];if(isNaN(d)||!d)d=0;f[l]=d}p[o].values.push(f)}}n(p)})}})}),define("plugin/library/table",["utils/utils"],function(e){return Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null},events:{click:"_onclick",dblclick:"_ondblclick"},first:!0,initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e){var t=$("<td></td>");t.append(e),this.row.append(t)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},remove:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},removeAll:function(){this.$tbody.html(""),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.remove(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="grid"><thead></thead><tbody style="cursor: pointer;"></tbody></table><tmessage>'+e.content+"</tmessage>"+"<div>"}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({list:{},optionsDefault:{height:300},initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.portlet=new e.View({title:"title",height:this.options.height,overflow:"hidden",operations:{edit:new t.ButtonIcon({icon:"fa-gear",tooltip:"Customize Chart",title:"Customize"})}}),this.setElement(this.portlet.$el);var s=this;this.app.charts.on("remove",function(e){s._removeChart(e.id)}),this.app.charts.on("redraw",function(e){e.ready()?s._refreshChart(e):e.on("change:state",function(){e.ready()&&s._refreshChart(e)})})},showChart:function(e){this.show(),this.hideCharts();var t=this.list[e];if(t){var n=self.app.charts.get(e);this.portlet.title(n.get("title")),this.portlet.setOperation("edit",function(){self.app.chart.copy(n),self.app.charts_view.hide(),self.app.chart_view.$el.show()}),t.$el.show(),$(window).trigger("resize")}},hideCharts:function(){this.$el.find(".item").hide()},show:function(){$(".tooltip").hide(),this.$el.show()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshChart:function(e){var t=this;if(!e.ready()){t.app.log("viewport:_refreshChart()","Invalid attempt to refresh chart before completion.");return}var n=e.id;this._removeChart(n);var r="#"+n,i=$(this._template({id:r}));this.portlet.append(i);var s=d3.select(r+" svg");this.list[n]={svg:s,$el:i},this.showChart(n),e.off("change:state"),e.on("change:state",function(){var t=i.find("#info"),n=t.find("#icon");n.removeClass(),t.show(),t.find("#text").html(e.get("state_info"));var r=e.get("state");switch(r){case"ok":t.hide();break;case"failed":n.addClass("fa fa-warning");break;default:n.addClass("fa fa-spinner fa-spin")}}),e.state("wait","Please wait...");var o=e.get("type"),u=this.app.types.get(o),t=this;require(["plugin/charts/"+o+"/"+o],function(n){var r=new n(t.app,{svg:s}),i=u.mode;i=="execute"?t.app.jobs.submit(e,t._defaultRequestString(e),function(){r.draw(e,t._defaultRequestDictionary(e))}):r.draw(e,t._defaultRequestDictionary(e))})},_removeChart:function(e){var t=this.list[e];t&&(t.svg.remove(),t.$el.remove())},_template:function(e){return'<div id="'+e.id.substr(1)+'" class="item">'+'<span id="info">'+'<span id="icon" style="font-size: 1.2em; display: inline-block;"/>'+'<span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/>'+"</span>"+'<svg style="height: auto;"/>'+"</div>"},_defaultRequestString:function(e){var t=this.app.types.get(e.get("type")),n="",r=0;return e.groups.each(function(e){for(var i in t.columns)n+=i+"_"+ ++r+":"+(parseInt(e.get(i))+1)+", "}),n.substring(0,n.length-2)},_defaultRequestDictionary:function(e){var t=this.app.types.get(e.get("type")),n={id:e.get("dataset_id"),groups:[]},r=0;return e.groups.each(function(e){var i={};for(var s in t.columns)i[s]=e.get(s);n.groups.push({key:++r+":"+e.get("key"),columns:i})}),n}})}),define("plugin/views/charts",["mvc/ui/ui-portlet","plugin/library/table","plugin/library/ui","utils/utils","plugin/models/group","plugin/views/viewport"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(i,o){this.app=i,this.viewport_view=new s(i),this.table=new t({content:"Add charts to this table.",ondblclick:function(e){var t=u.app.charts.get(e);u.app.chart.copy(t),u.hide(),u.app.chart_view.$el.show()},onchange:function(e){var t=u.app.charts.get(e);u.app.config.set("title",t.get("title")),u.viewport_view.showChart(e)}});var u=this;this.portlet=new e.View({icon:"fa-list",title:"List of created charts:",height:100,operations:{"new":new n.ButtonIcon({icon:"fa-magic",tooltip:"Create a new Chart",title:"New",onclick:function(){u.hide(),u.app.chart.reset(),u.app.chart_view.$el.show()}}),"delete":new n.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this Chart",title:"Delete",onclick:function(){var e=u.table.value();if(!e)return;var t=u.app.charts.get(e);u.app.modal.show({title:"Are you sure?",body:'The selected chart "'+t.get("title")+'" will be irreversibly deleted.',buttons:{Cancel:function(){u.app.modal.hide()},Delete:function(){u.app.modal.hide(),u.app.charts.remove(e)}}})}})}}),this.portlet.append(this.table.$el),this.app.options.config.widget||this.$el.append(this.portlet.$el),this.$el.append(r.wrap("")),this.$el.append(this.viewport_view.$el);var u=this;this.app.charts.on("add",function(e){u._addChart(e)}),this.app.charts.on("remove",function(e){u._removeChart(e)}),this.app.charts.on("change",function(e){u._changeChart(e)})},hide:function(){$(".tooltip").hide(),this.$el.hide()},_addChart:function(e){this.table.add(e.get("title"));var t=this.app.types.get(e.get("type"));this.table.add(t.title),this.table.add("Last change: "+e.get("date")),this.table.prepend(e.get("id")),this.table.value(e.get("id"))},_removeChart:function(e){this.table.remove(e.id),this.table.size()==0?(this.hide(),this.app.chart.reset(),this.app.chart_view.$el.show()):this.table.value(this.app.charts.last().id)},_changeChart:function(e){e.get("type")&&(this._addChart(e),this.table.value(e.id))}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,list:{},$nav:null,$content:null,first_tab:null,optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom"}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=e.id,n={$title:$(this._template_tab(e)),$content:$(this._template_tab_content(e)),removable:e.ondel?!0:!1};this.list[t]=n,this.options.onnew?this.$nav.find("#new-tab").before(n.$title):this.$nav.append(n.$title),n.$content.append(e.$el),this.$content.append(n.$content),_.size(this.list)==1&&(n.$title.addClass("active"),n.$content.addClass("active"),this.first_tab=t);if(e.ondel){var r=n.$title.find("#delete");r.tooltip({title:"Delete this tab",placement:"bottom"}),r.on("click",function(){return r.tooltip("destroy"),e.ondel(),!1})}e.onclick&&n.$title.on("click",function(){e.onclick()})},del:function(e){var t=this.list[e];t.$title.remove(),t.$content.remove(),delete t,this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list){var t=this.list[e];t.removable&&this.del(e)}},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&this.list[e].$title.find("a").tab("show")},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.list[e].$title.find("#text");return t&&n.html(t),n.html()},_template:function(e){return'<div class="tabbable tabs-left"><ul class="tab-navigation nav nav-tabs"/><div class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i style="font-size: 0.8em; margin-right: 5px;" class="fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="title-'+e.id+'">'+'<a title="" href="#tab-'+e.id+'" data-toggle="tab" data-original-title="">'+'<span id="text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" style="font-size: 0.8em; margin-left: 5px; cursor: pointer;" class="fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"ok",state_info:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state_info",t),this.set("state",e)},ready:function(){return this.get("state")=="ok"||this.get("state")=="failed"}})}),define("plugin/views/group",["plugin/library/table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({columns:[],initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(){s.group.set("key",s.group_key.value())}}),this.table=new e({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.app.types.get(n);this.table.removeAll();var s={};for(var o in i.columns){var u=this.group.get(o);u||this.group.set(o,0);var a=i.columns[o],f=new t.Select.View({id:"select_"+o,gid:o,onchange:function(e){r.group.set(this.gid,e)},value:u,wait:!0});this.table.add(a.title),this.table.add(f.$el),this.table.append(o),s[o]=f}this.app.datasets.request({id:e},function(e){r.columns=[];var t=e.metadata_column_types;for(var n in t)(t[n]=="int"||t[n]=="float")&&r.columns.push({label:"Column: "+(parseInt(n)+1)+" ["+t[n]+"]",value:n});for(var n in s)s[n].update(r.columns),s[n].show()})},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({initialize:function(r){this.table_title=new t.Label({title:r.title}),this.table=new e({content:r.content});var i=$("<div/>");i.append(n.wrap(this.table_title.$el)),i.append(n.wrap(this.table.$el)),this.setElement(i)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.removeAll();for(var n in e)this._add(n,e[n],t)},_add:function(e,n,r){var i=null,s=n.type;switch(s){case"text":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"select":i=new t.Select.View({data:n.data,onchange:function(){r.set(e,i.value())}});break;case"slider":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"separator":i=$("<div/>");break;default:console.log("ui-table-form:_add","Unknown setting type ("+n.type+")");return}if(s!="separator"){r.get(e)||r.set(e,n.init),i.value(r.get(e));var o=$("<div/>");o.append(i.$el),o.append('<div class="toolParamHelp" style="font-size: 0.9em;">'+n.info+"</div>"),this.table.add('<span style="white-space: nowrap;">'+n.title+"</span>"),this.table.add(o)}else this.table.add('<h6 style="white-space: nowrap;">'+n.title+":<h6/>"),this.table.add($("<div/>"));this.table.append(e)}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View({title:"Chart options:",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refreshTable()})},_refreshTable:function(){var e=this.chart.get("type");if(!e)return;var t=this.app.types.get(e);this.form.title(t.title+":"),this.form.update(t.settings,this.chart.settings)}})}),define("plugin/views/chart",["mvc/ui/ui-tabs","plugin/library/table","plugin/library/ui","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings"],function(e,t,n,r,i,s,o,u){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(i,s){this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault);var o=this;this.table=new t({header:!1,onconfirm:function(e){o.chart.groups.length>0?o.app.modal.show({title:"Switching to another chart type?",body:"If you continue your settings and selections will be reseted.",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o.table.value(e)}}}):o.table.value(e)},onchange:function(e){o.chart.groups.reset(),o.chart.settings.clear(),o.chart.set({type:e})},ondblclick:function(e){o.tabs.show("settings")},content:"No chart types available"});var a=0,f=i.types.attributes;for(var l in f){var c=f[l];this.table.add(++a+"."),this.table.add(c.title),this.table.append(l)}this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)},operations:{save:new n.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o.chart.groups.length==0&&o._addGroupModel(),o._saveChart(),o.hide(),o.app.charts_view.$el.show()}}),back:new n.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Return",onclick:function(){o.hide(),o.app.charts_view.$el.show()}})}}),this.title=new n.Input({placeholder:"Chart title",onchange:function(){o.app.config.set("title",o.title.value())}});var h=$("<div/>");h.append(r.wrap((new n.Label({title:"Provide a chart title:"})).$el)),h.append(r.wrap(this.title.$el)),h.append(r.wrap((new n.Label({title:"Select a chart type:"})).$el)),h.append(r.wrap(this.table.$el)),this.tabs.add({id:"main",title:"Start",$el:h}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.setElement(this.tabs.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o.title.value(e.get("title")),o.app.config.set("title",e.get("title"))}),this.chart.on("change:type",function(e){o.table.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.charts.on("add",function(e){o.tabs.showOperation("back")}),this.app.charts.on("remove",function(e){o.app.charts.length==0&&o.tabs.hideOperation("back")}),this.app.charts.on("reset",function(e){o.tabs.hideOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Chart data"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e}),r=t.chart.groups.length;this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey()},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey()},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","bardiagram"),this.chart.set("dataset_id",this.app.options.dataset.id),this.chart.set("dataset_hid",this.app.options.dataset.hid),this.chart.set("history_id",this.app.options.dataset.history_id),this.chart.set("title","New Chart")},_saveChart:function(){this.chart.set({type:this.table.value(),title:this.title.value(),date:r.time()});var e=this.app.charts.get(this.chart.id);e?e.copy(this.chart):(e=this.chart.clone(),e.copy(this.chart),this.app.charts.add(e)),e.trigger("redraw",e)}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e3,query_timeout:500,title:"Create a new chart"}})}),define("plugin/models/charts",["plugin/models/chart"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/charts/_nvd3/config",[],function(){return{title:"",columns:{y:{title:"Values for y-axis"}},settings:{separator_label:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"f",data:[{label:"-- Do not show values --",value:"hide"},{label:"Float",value:"f"},{label:"Exponent",value:"e"},{label:"Integer",value:"d"},{label:"Percentage",value:"p"},{label:"Rounded",value:"r"},{label:"SI-prefix",value:"s"}]},x_axis_tick:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:".1",data:[{label:"0.00001",value:".5"},{label:"0.0001",value:".4"},{label:"0.001",value:".3"},{label:"0.01",value:".2"},{label:"0.1",value:".1"},{label:"1",value:"1"}]},separator_tick:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"f",data:[{label:"-- Do not show values --",value:"hide"},{label:"Float",value:"f"},{label:"Exponent",value:"e"},{label:"Integer",value:"d"},{label:"Percentage",value:"p"},{label:"Rounded",value:"r"},{label:"SI-prefix",value:"s"}]},y_axis_tick:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:".1",data:[{label:"0.00001",value:".5"},{label:"0.0001",value:".4"},{label:"0.001",value:".3"},{label:"0.01",value:".2"},{label:"0.1",value:".1"},{label:"1",value:"1"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"select",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),define("plugin/charts/bardiagram/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Bar diagram"})}),define("plugin/charts/histogram/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",mode:"execute",columns:{y:{title:"Observations"}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"},y_axis_tick:{init:".3"},separator_custom:{title:"Advanced",type:"separator"},bin_size:{title:"Number of bins",info:"Provide the number of histogram bins. The parsed data will be evenly distributed into bins according to the minimum and maximum values of the dataset.",type:"slider",init:10,min:10,max:1e3}}})}),define("plugin/charts/horizontal/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Bar diagram (horizontal)",settings:{x_axis_type:{init:"hide"}}})}),define("plugin/charts/line/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Line chart"})}),define("plugin/charts/linewithfocus/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus"})}),define("plugin/charts/piechart/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Pie chart"})}),define("plugin/charts/scatterplot/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",columns:{x:{title:"Values for x-axis"}}})}),define("plugin/charts/stackedarea/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Stacked area"})}),define("plugin/charts/types",["plugin/charts/bardiagram/config","plugin/charts/histogram/config","plugin/charts/horizontal/config","plugin/charts/line/config","plugin/charts/linewithfocus/config","plugin/charts/piechart/config","plugin/charts/scatterplot/config","plugin/charts/stackedarea/config"],function(e,t,n,r,i,s,o,u){return Backbone.Model.extend({defaults:{bardiagram:e,horizontal:n,histogram:t,line:r,linewithfocus:i,piechart:s,scatterplot:o,stackedarea:u}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/views/charts","plugin/views/chart","plugin/models/config","plugin/models/chart","plugin/models/charts","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c){return Backbone.View.extend({initialize:function(n){this.options=n,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new a,this.jobs=new i(this),this.types=new c,this.chart=new f,this.charts=new l,this.datasets=new s(this),this.charts_view=new o(this),this.chart_view=new u(this),this.options.config.widget?this.portlet=$("<div></div>"):this.portlet=new t.View({icon:"fa-bar-chart-o"}),this.portlet.append(this.charts_view.$el),this.portlet.append(this.chart_view.$el),this.options.config.widget?this.setElement(this.portlet):this.setElement(this.portlet.$el),this.charts_view.$el.hide();var r=this;this.config.on("change:title",function(){r._refreshTitle()}),this.render()},render:function(){this._refreshTitle()},_refreshTitle:function(){var e=this.config.get("title");e&&(e=" - "+e),this.portlet.title("Charts"+e)},execute:function(e){},onunload:function(){},log:function(e,t){console.log(e+" "+t)}})});
\ No newline at end of file
diff -r 9098e1c050652c0828cb5bf79f835c2ca0e943d8 -r 1876b133576e3d1386e775f9f40a46fbd15bde51 config/plugins/visualizations/charts/static/charts/_nvd3/config.js
--- a/config/plugins/visualizations/charts/static/charts/_nvd3/config.js
+++ b/config/plugins/visualizations/charts/static/charts/_nvd3/config.js
@@ -168,6 +168,26 @@
]
},
+ separator_legend : {
+ title : 'Others',
+ type : 'separator'
+ },
+ show_legend : {
+ title : 'Show legend',
+ info : 'Would you like to add a legend?',
+ type : 'select',
+ init : 'true',
+ data : [
+ {
+ label : 'Yes',
+ value : 'true'
+ },
+ {
+ label : 'No',
+ value : 'false'
+ }
+ ]
+ },
}
};
diff -r 9098e1c050652c0828cb5bf79f835c2ca0e943d8 -r 1876b133576e3d1386e775f9f40a46fbd15bde51 config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js
--- a/config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js
+++ b/config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js
@@ -17,7 +17,7 @@
var self = this;
this.app.datasets.request(request_dictionary, function(data) {
nv.addGraph(function() {
-
+ // x axis
if (chart.settings.get('x_axis_type') == 'hide') {
nvd3_model.xAxis.tickFormat(function() { return '' });
} else {
@@ -25,8 +25,10 @@
nvd3_model.xAxis.tickFormat(d3.format(tick));
}
+ // x axis label
nvd3_model.xAxis.axisLabel(chart.settings.get('x_axis_label'));
+ // y axis
if (chart.settings.get('y_axis_type') == 'hide') {
nvd3_model.yAxis.tickFormat(function() { return '' });
} else {
@@ -34,22 +36,32 @@
nvd3_model.yAxis.tickFormat(d3.format(tick));
}
+ // y axis label
nvd3_model.yAxis.axisLabel(chart.settings.get('y_axis_label'))
.axisLabelDistance(30);
+ // controls
if (chart.groups.length == 1) {
nvd3_model.options({ showControls: false });
}
- //nvd3_model.useInteractiveGuideline(true);
+ // legend
+ var legend_visible = true;
+ if (chart.settings.get('show_legend') == 'false') {
+ legend_visible = false;
+ }
+ nvd3_model.showLegend(legend_visible);
+ // custom callback
if (callback) {
callback(nvd3_model);
}
+ // parse data to svg
self.options.svg.datum(data)
.call(nvd3_model);
+ // refresh on window resize
nv.utils.windowResize(nvd3_model.update);
// set chart state
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: jeremy goecks: JS Config: iterate through param options using underscore.
by commits-noreply＠bitbucket.org 10 Mar '14
by commits-noreply＠bitbucket.org 10 Mar '14
10 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/9098e1c05065/
Changeset: 9098e1c05065
User: jeremy goecks
Date: 2014-03-09 18:13:38
Summary: JS Config: iterate through param options using underscore.
Affected #: 1 file
diff -r f5700f9988e64b84254e72b619fa4d2dc1b4e444 -r 9098e1c050652c0828cb5bf79f835c2ca0e943d8 static/scripts/utils/config.js
--- a/static/scripts/utils/config.js
+++ b/static/scripts/utils/config.js
@@ -175,9 +175,9 @@
// Draw parameter as select area
else if ( type === 'select' ) {
var select = $('<select />').attr("id", id);
- for ( var i = 0; i < param.options.length; i++ ) {
- $("<option/>").text( param.options[i].label ).attr( "value", param.options[i].value ).appendTo( select );
- }
+ _.each(param.get('options'), function(option) {
+ $("<option/>").text( option.label ).attr( "value", option.value ).appendTo( select );
+ });
select.val( value );
row.append( select );
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: jeremy goecks: Fix color config initialization to use default value rather than random value.
by commits-noreply＠bitbucket.org 10 Mar '14
by commits-noreply＠bitbucket.org 10 Mar '14
10 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/f5700f9988e6/
Changeset: f5700f9988e6
User: jeremy goecks
Date: 2014-03-09 18:01:48
Summary: Fix color config initialization to use default value rather than random value.
Affected #: 1 file
diff -r 765236afce9551bb8938d236e12ed5d90cbe2c54 -r f5700f9988e64b84254e72b619fa4d2dc1b4e444 static/scripts/utils/config.js
--- a/static/scripts/utils/config.js
+++ b/static/scripts/utils/config.js
@@ -17,13 +17,14 @@
}
if (!this.get('value')) {
- if (this.get('type') === 'color') {
+ // Use default to set value.
+ this.set_value(this.get('default_value'));
+
+ // If no default value for color config, set random color.
+ if (!this.get('value') && this.get('type') === 'color') {
// For color setting, set random color.
this.set('value', util_mod.get_random_color());
}
- else {
- this.set_value(this.get('default_value'));
- }
}
},
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: jeremy goecks: Trackster preferences cleanup.
by commits-noreply＠bitbucket.org 10 Mar '14
by commits-noreply＠bitbucket.org 10 Mar '14
10 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/765236afce95/
Changeset: 765236afce95
User: jeremy goecks
Date: 2014-03-09 17:51:16
Summary: Trackster preferences cleanup.
Affected #: 1 file
diff -r 4db68bf05fbf11f413b441544c77772a22a868b1 -r 765236afce9551bb8938d236e12ed5d90cbe2c54 static/scripts/viz/trackster/tracks.js
--- a/static/scripts/viz/trackster/tracks.js
+++ b/static/scripts/viz/trackster/tracks.js
@@ -208,7 +208,6 @@
// -- Set up drawable configuration. --
this.config = config_mod.ConfigSettingCollection.from_models_and_saved_values(this.config_params, obj_dict.prefs);
- console.log(obj_dict.prefs);
this.config.each(function(s) { console.log(s.id, s.get('value')) })
// If there's no saved name, use object name.
@@ -875,7 +874,7 @@
initialize: function(obj_dict) {
extend(obj_dict, {
- obj_type: "View"
+ obj_type: "View"
});
DrawableCollection.call(this, "View", obj_dict.container, obj_dict);
this.chrom = null;
@@ -895,16 +894,13 @@
this.reset();
// Define track configuration
- this.config = new config_mod.ConfigSettingCollection({
- models: [
+ this.config = config_mod.ConfigSettingCollection.from_models_and_saved_values( [
{ key: 'a_color', label: 'A Color', type: 'color', default_value: "#FF0000" },
{ key: 'c_color', label: 'C Color', type: 'color', default_value: "#00FF00" },
{ key: 'g_color', label: 'G Color', type: 'color', default_value: "#0000FF" },
{ key: 't_color', label: 'T Color', type: 'color', default_value: "#FF00FF" },
{ key: 'n_color', label: 'N Color', type: 'color', default_value: "#AAAAAA" }
- ],
- saved_values: obj_dict.prefs,
- });
+ ], obj_dict.prefs);
},
render: function() {
@@ -1151,7 +1147,8 @@
},
get_base_color: function(base) {
- return this.config.get('values')[ base.toLowerCase() + '_color' ] || this.config.get('values').n_color;
+ return this.config.get_value(base.toLowerCase() + '_color') ||
+ this.config.get_value('n_color');
}
});
@@ -3740,7 +3737,7 @@
},
set_painter_from_config: function() {
- if ( this.config.get('values').connector_style === 'arcs' ) {
+ if ( this.config.get_value('connector_style') === 'arcs' ) {
this.painter = painters.ArcLinkedFeaturePainter;
} else {
this.painter = painters.LinkedFeaturePainter;
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: jeremy goecks: Charts and scatterplot: ensure they work with non-Web-root installations by using web helpers and url_for.
by commits-noreply＠bitbucket.org 09 Mar '14
by commits-noreply＠bitbucket.org 09 Mar '14
09 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/4db68bf05fbf/
Changeset: 4db68bf05fbf
User: jeremy goecks
Date: 2014-03-09 14:43:08
Summary: Charts and scatterplot: ensure they work with non-Web-root installations by using web helpers and url_for.
Affected #: 2 files
diff -r 341a68a7084879a631343b66db4f89883ce48702 -r 4db68bf05fbf11f413b441544c77772a22a868b1 config/plugins/visualizations/charts/templates/charts.mako
--- a/config/plugins/visualizations/charts/templates/charts.mako
+++ b/config/plugins/visualizations/charts/templates/charts.mako
@@ -1,12 +1,4 @@
<%
- scripts = [ 'jquery/jquery.js',
- 'jquery/select2.js',
- 'bootstrap.js',
- 'require.js',
- 'underscore.js',
- 'backbone/backbone.js',
- 'd3.js']
-
root = h.url_for( "/" )
app_root = root + "plugins/visualizations/charts/static/"
%>
@@ -18,19 +10,23 @@
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /><title>${hda.name} | ${visualization_name}</title>
- %for v in scripts:
- <script type="text/javascript" charset="utf-8" src="${root}static/scripts/libs/${v}" ></script>
- %endfor
+ ${h.js( 'libs/jquery/jquery',
+ 'libs/jquery/select2',
+ 'libs/bootstrap',
+ 'libs/require',
+ 'libs/underscore',
+ 'libs/backbone/backbone',
+ 'libs/d3' )}
## css
- <link type="text/css" rel="Stylesheet" media="screen" href="${root}static/style/base.css">
+ ${h.css( 'base' )}
## install nv.d3 module
- <script type="text/javascript" charset="utf-8" src="${app_root}plugins/nv.d3.js" ></script>
- <link type="text/css" rel="Stylesheet" media="screen" href="${app_root}plugins/nv.d3.css">
+ ${h.javascript_link( app_root + "plugins/nv.d3.js" )}
+ ${h.stylesheet_link( app_root + "plugins/nv.d3.css" )}
## load merged/minified code
- <script type="text/javascript" charset="utf-8" src="${app_root}build-app.js" ></script>
+ ${h.javascript_link( app_root + "build-app.js" )}
</head><body>
diff -r 341a68a7084879a631343b66db4f89883ce48702 -r 4db68bf05fbf11f413b441544c77772a22a868b1 config/plugins/visualizations/scatterplot/templates/scatterplot.mako
--- a/config/plugins/visualizations/scatterplot/templates/scatterplot.mako
+++ b/config/plugins/visualizations/scatterplot/templates/scatterplot.mako
@@ -6,6 +6,9 @@
# optionally bootstrap data from dprov
##data = list( hda.datatype.dataset_column_dataprovider( hda, limit=10000 ) )
+
+ # Use root for resource loading.
+ root = h.url_for( '/' )
%>
## ----------------------------------------------------------------------------
@@ -16,25 +19,24 @@
<title>${title or default_title} | ${visualization_display_name}</title>
## ----------------------------------------------------------------------------
-<link type="text/css" rel="Stylesheet" media="screen" href="/static/style/base.css">
-<link type="text/css" rel="Stylesheet" media="screen" href="/static/style/jquery-ui/smoothness/jquery-ui.css">
-<link type="text/css" rel="Stylesheet" media="screen" href="/plugins/visualizations/scatterplot/static/scatterplot.css">
+${h.css( 'base', 'jquery-ui/smoothness/jquery-ui')}
+${h.stylesheet_link( root + 'plugins/visualizations/scatterplot/static/scatterplot.css' )}
## ----------------------------------------------------------------------------
-<script type="text/javascript" src="/static/scripts/libs/jquery/jquery.js"></script>
-<script type="text/javascript" src="/static/scripts/libs/jquery/jquery.migrate.js"></script>
-<script type="text/javascript" src="/static/scripts/libs/jquery/jquery-ui.js"></script>
-<script type="text/javascript" src="/static/scripts/libs/bootstrap.js"></script>
-<script type="text/javascript" src="/static/scripts/libs/underscore.js"></script>
-<script type="text/javascript" src="/static/scripts/libs/backbone/backbone.js"></script>
-<script type="text/javascript" src="/static/scripts/libs/handlebars.runtime.js"></script>
-<script type="text/javascript" src="/static/scripts/libs/d3.js"></script>
+${h.js( 'libs/jquery/jquery',
+ 'libs/jquery/jquery.migrate',
+ 'libs/jquery/jquery-ui',
+ 'libs/bootstrap',
+ 'libs/require',
+ 'libs/underscore',
+ 'libs/backbone/backbone',
+ 'libs/d3',
+ 'libs/handlebars.runtime',
+ 'mvc/base-mvc',
+ 'mvc/ui',
+ 'mvc/visualization/visualization-model' )}
-<script type="text/javascript" src="/static/scripts/mvc/base-mvc.js"></script>
-<script type="text/javascript" src="/static/scripts/mvc/ui.js"></script>
-<script type="text/javascript" src="/static/scripts/mvc/visualization/visualization-model.js"></script>
-
-<script type="text/javascript" src="/plugins/visualizations/scatterplot/static/scatterplot-edit.js"></script>
+${h.javascript_link( root + 'plugins/visualizations/scatterplot/static/scatterplot-edit.js' )}
</head>
## ----------------------------------------------------------------------------
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Charts: Fix stacked area chart
by commits-noreply＠bitbucket.org 09 Mar '14
by commits-noreply＠bitbucket.org 09 Mar '14
09 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/341a68a70848/
Changeset: 341a68a70848
User: guerler
Date: 2014-03-09 08:18:32
Summary: Charts: Fix stacked area chart
Affected #: 1 file
diff -r ecf395a6f4f79efab99c3645d1f6950d721acf48 -r 341a68a7084879a631343b66db4f89883ce48702 config/plugins/visualizations/charts/static/plugins/nv.d3.js
--- a/config/plugins/visualizations/charts/static/plugins/nv.d3.js
+++ b/config/plugins/visualizations/charts/static/plugins/nv.d3.js
@@ -2902,12 +2902,7 @@
indexLine
.data([index]);
- //When dragging the index line, turn off line transitions.
- // Then turn them back on when done dragging.
- var oldDuration = chart.transitionDuration();
- chart.transitionDuration(0);
chart.update();
- chart.transitionDuration(oldDuration);
}
g.select('.nv-background rect')
@@ -6546,11 +6541,7 @@
brush
.x(x2)
.on('brush', function() {
- //When brushing, turn off transitions because chart needs to change immediately.
- var oldTransition = chart.transitionDuration();
- chart.transitionDuration(0);
onBrush();
- chart.transitionDuration(oldTransition);
});
if (brushExtent) brush.extent(brushExtent);
@@ -13995,7 +13986,6 @@
? d3.format('%') : yAxisTickFormat);
g.select('.nv-y.nv-axis')
- .duration(0)
.call(yAxis);
}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Charts: Fix line with focus chart
by commits-noreply＠bitbucket.org 09 Mar '14
by commits-noreply＠bitbucket.org 09 Mar '14
09 Mar '14
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/ecf395a6f4f7/
Changeset: ecf395a6f4f7
User: guerler
Date: 2014-03-09 07:50:40
Summary: Charts: Fix line with focus chart
Affected #: 1 file
diff -r 77e16bf8a25fc27610362a9577155f76da3cf1a5 -r ecf395a6f4f79efab99c3645d1f6950d721acf48 config/plugins/visualizations/charts/static/plugins/nv.d3.js
--- a/config/plugins/visualizations/charts/static/plugins/nv.d3.js
+++ b/config/plugins/visualizations/charts/static/plugins/nv.d3.js
@@ -10374,8 +10374,7 @@
//.attr('d', arc);
slices.select('path')
- .attr('d', arc)
- .attrTween('d', arcTween);
+ .attr('d', arc);
if (showLabels) {
// This does the normal label
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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