galaxy-commits March 2014

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commit/galaxy-central: guerler: Charts: Remove transitions
by commits-noreply＠bitbucket.org 09 Mar '14

09 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/77e16bf8a25f/ Changeset: 77e16bf8a25f User: guerler Date: 2014-03-09 07:45:47 Summary: Charts: Remove transitions Affected #: 1 file This diff is so big that we needed to truncate the remainder. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Add build process with requirejs optimizer
by commits-noreply＠bitbucket.org 09 Mar '14

09 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/e72cf379a6f7/ Changeset: e72cf379a6f7 User: guerler Date: 2014-03-09 04:36:01 Summary: Charts: Add build process with requirejs optimizer Affected #: 5 files diff -r e162e15c7d2ef94e132e369c59d0d6f1dd42b329 -r e72cf379a6f7830acdb867d6d48e94332f34df67 config/plugins/visualizations/charts/build/build.js --- /dev/null +++ b/config/plugins/visualizations/charts/build/build.js @@ -0,0 +1,12 @@ +({ + baseUrl : "../../../../../static/scripts/", + paths : { + "plugin": "../../config/plugins/visualizations/charts/static" + }, + shim : { + "libs/underscore": { exports: "_" }, + "libs/backbone/backbone": { exports: "Backbone" } + }, + name : "plugin/app", + out : "../static/build-app.js", +}) \ No newline at end of file diff -r e162e15c7d2ef94e132e369c59d0d6f1dd42b329 -r e72cf379a6f7830acdb867d6d48e94332f34df67 config/plugins/visualizations/charts/build/build.sh --- /dev/null +++ b/config/plugins/visualizations/charts/build/build.sh @@ -0,0 +1,2 @@ +#!/bin/bash +node r.js -o build.js \ No newline at end of file This diff is so big that we needed to truncate the remainder. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Hide control elements
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/e162e15c7d2e/ Changeset: e162e15c7d2e User: guerler Date: 2014-03-08 16:18:01 Summary: Charts: Hide control elements Affected #: 1 file diff -r 9d29df33bac909a04f172214934b6cb1c60db0e0 -r e162e15c7d2ef94e132e369c59d0d6f1dd42b329 config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js --- a/config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js +++ b/config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js @@ -37,6 +37,12 @@ nvd3_model.yAxis.axisLabel(chart.settings.get('y_axis_label')) .axisLabelDistance(30); + if (chart.groups.length == 1) { + nvd3_model.options({ showControls: false }); + } + + //nvd3_model.useInteractiveGuideline(true); + if (callback) { callback(nvd3_model); } Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Cache datasets
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/9d29df33bac9/ Changeset: 9d29df33bac9 User: guerler Date: 2014-03-08 11:39:36 Summary: Charts: Cache datasets Affected #: 3 files diff -r 0e7b5c5cfcd9bb3fc13c9087d661597c064ba546 -r 9d29df33bac909a04f172214934b6cb1c60db0e0 config/plugins/visualizations/charts/static/library/datasets.js --- a/config/plugins/visualizations/charts/static/library/datasets.js +++ b/config/plugins/visualizations/charts/static/library/datasets.js @@ -4,6 +4,9 @@ // widget return Backbone.Collection.extend( { + // list of datasets + list: {}, + // initialize initialize: function(app, options) { @@ -19,22 +22,31 @@ // link this var self = this; - // wait for dataset - Utils.request('GET', config.root + 'api/datasets/' + options.id, {}, function(dataset) { - switch (dataset.state) { - case 'error': - if (error) { - error(dataset); - } - break; - default: - if (options.groups) { - self._fetch(options, success); - } else { + // check if column data is requested + if (options.groups) { + this._fetch(options, success); + } else { + // check if dataset is available from cache + var dataset = this.list[options.id]; + if (dataset) { + success(dataset); + return; + } + + // request dataset + Utils.request('GET', config.root + 'api/datasets/' + options.id, {}, function(dataset) { + switch (dataset.state) { + case 'error': + if (error) { + error(dataset); + } + break; + default: + self.list[options.id] = dataset; success(dataset); - } - } - }); + } + }); + } }, // fetch data columns into dataset object diff -r 0e7b5c5cfcd9bb3fc13c9087d661597c064ba546 -r 9d29df33bac909a04f172214934b6cb1c60db0e0 config/plugins/visualizations/charts/static/library/ui-table-form.js --- a/config/plugins/visualizations/charts/static/library/ui-table-form.js +++ b/config/plugins/visualizations/charts/static/library/ui-table-form.js @@ -92,7 +92,7 @@ // combine field and info var $input = $('<div/>'); $input.append(field.$el); - $input.append('<div class="toolParamHelp">' + settings_def.info + '</div>'); + $input.append('<div class="toolParamHelp" style="font-size: 0.9em;">' + settings_def.info + '</div>'); // add row to table this.table.add('<span style="white-space: nowrap;">' + settings_def.title + '</span>'); diff -r 0e7b5c5cfcd9bb3fc13c9087d661597c064ba546 -r 9d29df33bac909a04f172214934b6cb1c60db0e0 config/plugins/visualizations/charts/templates/charts.mako --- a/config/plugins/visualizations/charts/templates/charts.mako +++ b/config/plugins/visualizations/charts/templates/charts.mako @@ -1,5 +1,6 @@ <% scripts = [ 'jquery/jquery.js', + 'jquery/select2.js', 'bootstrap.js', 'require.js', 'underscore.js', Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Validate column datatypes
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/0e7b5c5cfcd9/ Changeset: 0e7b5c5cfcd9 User: guerler Date: 2014-03-08 08:43:54 Summary: Charts: Validate column datatypes Affected #: 2 files diff -r 5459de70fd325cbde3937034880266e36d98e97d -r 0e7b5c5cfcd9bb3fc13c9087d661597c064ba546 config/plugins/visualizations/charts/static/library/datasets.js --- a/config/plugins/visualizations/charts/static/library/datasets.js +++ b/config/plugins/visualizations/charts/static/library/datasets.js @@ -127,7 +127,7 @@ result[j].values.push(value); } } - + // callback callback(result); }); diff -r 5459de70fd325cbde3937034880266e36d98e97d -r 0e7b5c5cfcd9bb3fc13c9087d661597c064ba546 config/plugins/visualizations/charts/static/views/group.js --- a/config/plugins/visualizations/charts/static/views/group.js +++ b/config/plugins/visualizations/charts/static/views/group.js @@ -111,17 +111,21 @@ // add select field to list list[id] = select; } - + // get dataset this.app.datasets.request({id : dataset_id}, function(dataset) { // configure columns self.columns = []; var meta = dataset.metadata_column_types; - for (var key in meta){ - self.columns.push({ - 'label' : key + ' [' + meta[key] + ']', - 'value' : key - }); + for (var key in meta) { + // check type + if(meta[key] == 'int' || meta[key] == 'float') { + // add to selection + self.columns.push({ + 'label' : 'Column: ' + (parseInt(key) + 1) + ' [' + meta[key] + ']', + 'value' : key + }); + } } // update select fields Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Fix histogram column label
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5459de70fd32/ Changeset: 5459de70fd32 User: guerler Date: 2014-03-08 08:33:06 Summary: Charts: Fix histogram column label Affected #: 1 file diff -r f744a6191603bfa6cdbd2c5b5bddba74aa66866d -r 5459de70fd325cbde3937034880266e36d98e97d config/plugins/visualizations/charts/static/charts/histogram/config.js --- a/config/plugins/visualizations/charts/static/charts/histogram/config.js +++ b/config/plugins/visualizations/charts/static/charts/histogram/config.js @@ -4,8 +4,8 @@ title : 'Histogram', mode : 'execute', columns : { - x : { - title : 'Values for x-axis' + y : { + title : 'Observations' } }, settings : { Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Switch to options tab on double click
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/f744a6191603/ Changeset: f744a6191603 User: guerler Date: 2014-03-08 08:25:04 Summary: Charts: Switch to options tab on double click Affected #: 1 file diff -r ee10590fc2bad868ed46db49f2dd29346672ab26 -r f744a6191603bfa6cdbd2c5b5bddba74aa66866d config/plugins/visualizations/charts/static/views/chart.js --- a/config/plugins/visualizations/charts/static/views/chart.js +++ b/config/plugins/visualizations/charts/static/views/chart.js @@ -64,6 +64,9 @@ // update chart type self.chart.set({type: type}); }, + ondblclick : function(chart_id) { + self.tabs.show('settings'); + }, content: 'No chart types available' }); Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Set default axis labels
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/ee10590fc2ba/ Changeset: ee10590fc2ba User: guerler Date: 2014-03-08 08:22:30 Summary: Charts: Set default axis labels Affected #: 1 file diff -r def038539c985774345ae0a7382c61b9d3dfde6e -r ee10590fc2bad868ed46db49f2dd29346672ab26 config/plugins/visualizations/charts/static/charts/_nvd3/config.js --- a/config/plugins/visualizations/charts/static/charts/_nvd3/config.js +++ b/config/plugins/visualizations/charts/static/charts/_nvd3/config.js @@ -16,7 +16,7 @@ title : 'Axis label', info : 'Provide a label for the axis.', type : 'text', - init : '', + init : 'X-axis', placeholder : 'Axis label' }, x_axis_type : { @@ -96,7 +96,7 @@ title : 'Axis label', info : 'Provide a label for the axis.', type : 'text', - init : '', + init : 'Y-axis', placeholder : 'Axis label' }, y_axis_type : { Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Add title to configuration panel
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/def038539c98/ Changeset: def038539c98 User: guerler Date: 2014-03-08 08:12:43 Summary: Charts: Add title to configuration panel Affected #: 4 files diff -r a384ace015505cdea2dafa907a04e9689aa4ec20 -r def038539c985774345ae0a7382c61b9d3dfde6e config/plugins/visualizations/charts/static/charts/histogram/config.js --- a/config/plugins/visualizations/charts/static/charts/histogram/config.js +++ b/config/plugins/visualizations/charts/static/charts/histogram/config.js @@ -9,8 +9,17 @@ } }, settings : { + x_axis_label : { + init : 'Breaks' + }, + y_axis_label : { + init : 'Density' + }, + y_axis_tick : { + init : '.3' + }, separator_custom : { - title : 'Histogram settings', + title : 'Advanced', type : 'separator' }, bin_size : { diff -r a384ace015505cdea2dafa907a04e9689aa4ec20 -r def038539c985774345ae0a7382c61b9d3dfde6e config/plugins/visualizations/charts/static/library/ui-table-form.js --- a/config/plugins/visualizations/charts/static/library/ui-table-form.js +++ b/config/plugins/visualizations/charts/static/library/ui-table-form.js @@ -8,17 +8,23 @@ // initialize initialize: function(options) { // ui elements + this.table_title = new Ui.Label({title: options.title}); this.table = new Table({content: options.content}); // create element var $view = $('<div/>'); - $view.append(Utils.wrap((new Ui.Label({title: options.title})).$el)); + $view.append(Utils.wrap(this.table_title.$el)); $view.append(Utils.wrap(this.table.$el)); // add element this.setElement($view); }, + // title + title: function(new_title) { + this.table_title.title(new_title); + }, + // update update: function(settings, model) { // reset table diff -r a384ace015505cdea2dafa907a04e9689aa4ec20 -r def038539c985774345ae0a7382c61b9d3dfde6e config/plugins/visualizations/charts/static/library/ui.js --- a/config/plugins/visualizations/charts/static/library/ui.js +++ b/config/plugins/visualizations/charts/static/library/ui.js @@ -18,6 +18,11 @@ this.setElement(this._template(this.options)); }, + // title + title: function(new_title) { + this.$el.find('b').html(new_title); + }, + // template _template: function(options) { return '<label><b>' + options.title + '</b></label>'; diff -r a384ace015505cdea2dafa907a04e9689aa4ec20 -r def038539c985774345ae0a7382c61b9d3dfde6e config/plugins/visualizations/charts/static/views/settings.js --- a/config/plugins/visualizations/charts/static/views/settings.js +++ b/config/plugins/visualizations/charts/static/views/settings.js @@ -40,9 +40,13 @@ if (!chart_type) { return; } + // get settings + var chart_definition = this.app.types.get(chart_type); + + // set title + this.form.title(chart_definition.title + ':'); // update table form model - var chart_definition = this.app.types.get(chart_type); this.form.update(chart_definition.settings, this.chart.settings); } }); Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Charts: Improve chart customization
by commits-noreply＠bitbucket.org 08 Mar '14

08 Mar '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/a384ace01550/ Changeset: a384ace01550 User: guerler Date: 2014-03-08 07:53:04 Summary: Charts: Improve chart customization Affected #: 12 files diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/_nvd3/config.js --- a/config/plugins/visualizations/charts/static/charts/_nvd3/config.js +++ b/config/plugins/visualizations/charts/static/charts/_nvd3/config.js @@ -8,20 +8,166 @@ } }, settings : { + separator_label : { + title : 'X axis', + type : 'separator' + }, x_axis_label : { - title : 'Axis label (x)', - info : 'Provide a label for the \'x\' axis.', + title : 'Axis label', + info : 'Provide a label for the axis.', type : 'text', init : '', placeholder : 'Axis label' }, + x_axis_type : { + title : 'Axis value type', + info : 'Select the value type of the axis.', + type : 'select', + init : 'f', + data : [ + { + label : '-- Do not show values --', + value : 'hide' + }, + { + label : 'Float', + value : 'f' + }, + { + label : 'Exponent', + value : 'e' + }, + { + label : 'Integer', + value : 'd' + }, + { + label : 'Percentage', + value : 'p' + }, + { + label : 'Rounded', + value : 'r' + }, + { + label : 'SI-prefix', + value : 's' + } + ] + }, + x_axis_tick : { + title : 'Axis tick format', + info : 'Select the tick format for the axis.', + type : 'select', + init : '.1', + data : [ + { + label : '0.00001', + value : '.5' + }, + { + label : '0.0001', + value : '.4' + }, + { + label : '0.001', + value : '.3' + }, + { + label : '0.01', + value : '.2' + }, + { + label : '0.1', + value : '.1' + }, + { + label : '1', + value : '1' + } + ] + + }, + separator_tick : { + title : 'Y axis', + type : 'separator' + }, y_axis_label : { - title : 'Axis label (y)', - info : 'Provide a label for the \'y\' axis.', + title : 'Axis label', + info : 'Provide a label for the axis.', type : 'text', init : '', placeholder : 'Axis label' - } + }, + y_axis_type : { + title : 'Axis value type', + info : 'Select the value type of the axis.', + type : 'select', + init : 'f', + data : [ + { + label : '-- Do not show values --', + value : 'hide' + }, + { + label : 'Float', + value : 'f' + }, + { + label : 'Exponent', + value : 'e' + }, + { + label : 'Integer', + value : 'd' + }, + { + label : 'Percentage', + value : 'p' + }, + { + label : 'Rounded', + value : 'r' + }, + { + label : 'SI-prefix', + value : 's' + } + ] + }, + y_axis_tick : { + title : 'Axis tick format', + info : 'Select the tick format for the axis.', + type : 'select', + init : '.1', + data : [ + { + label : '0.00001', + value : '.5' + }, + { + label : '0.0001', + value : '.4' + }, + { + label : '0.001', + value : '.3' + }, + { + label : '0.01', + value : '.2' + }, + { + label : '0.1', + value : '.1' + }, + { + label : '1', + value : '1' + } + ] + + }, } }; diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js --- a/config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js +++ b/config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js @@ -18,12 +18,24 @@ this.app.datasets.request(request_dictionary, function(data) { nv.addGraph(function() { - nvd3_model.yAxis.tickFormat(d3.format('.1f')) - .axisLabel(chart.settings.get('y_axis_label', 'Frequency')) - .axisLabelDistance(30); + if (chart.settings.get('x_axis_type') == 'hide') { + nvd3_model.xAxis.tickFormat(function() { return '' }); + } else { + var tick = chart.settings.get('x_axis_tick') + chart.settings.get('x_axis_type'); + nvd3_model.xAxis.tickFormat(d3.format(tick)); + } - nvd3_model.xAxis.tickFormat(d3.format('.2f')) - .axisLabel(chart.settings.get('x_axis_label', 'Breaks')); + nvd3_model.xAxis.axisLabel(chart.settings.get('x_axis_label')); + + if (chart.settings.get('y_axis_type') == 'hide') { + nvd3_model.yAxis.tickFormat(function() { return '' }); + } else { + var tick = chart.settings.get('y_axis_tick') + chart.settings.get('y_axis_type'); + nvd3_model.yAxis.tickFormat(d3.format(tick)); + } + + nvd3_model.yAxis.axisLabel(chart.settings.get('y_axis_label')) + .axisLabelDistance(30); if (callback) { callback(nvd3_model); diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/histogram/config.js --- a/config/plugins/visualizations/charts/static/charts/histogram/config.js +++ b/config/plugins/visualizations/charts/static/charts/histogram/config.js @@ -9,8 +9,12 @@ } }, settings : { + separator_custom : { + title : 'Histogram settings', + type : 'separator' + }, bin_size : { - title : 'Number of Bins', + title : 'Number of bins', info : 'Provide the number of histogram bins. The parsed data will be evenly distributed into bins according to the minimum and maximum values of the dataset.', type : 'slider', init : 10, diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/histogram/histogram.js --- a/config/plugins/visualizations/charts/static/charts/histogram/histogram.js +++ b/config/plugins/visualizations/charts/static/charts/histogram/histogram.js @@ -27,10 +27,7 @@ } var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(nv.models.multiBarChart(), chart, request_dictionary, function(nvd3_model) { - nvd3_model.xAxis.tickFormat(d3.format('.2f')); - nvd3_model.yAxis.tickFormat(d3.format('.3f')); - }); + nvd3.draw(nv.models.multiBarChart(), chart, request_dictionary); } }); diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/horizontal/config.js --- a/config/plugins/visualizations/charts/static/charts/horizontal/config.js +++ b/config/plugins/visualizations/charts/static/charts/horizontal/config.js @@ -2,6 +2,11 @@ return $.extend(true, {}, nvd3_config, { title : 'Bar diagram (horizontal)', + settings : { + x_axis_type : { + init : 'hide' + } + } }); }); \ No newline at end of file diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/horizontal/horizontal.js --- a/config/plugins/visualizations/charts/static/charts/horizontal/horizontal.js +++ b/config/plugins/visualizations/charts/static/charts/horizontal/horizontal.js @@ -14,9 +14,7 @@ draw : function(chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(nv.models.multiBarHorizontalChart(), chart, request_dictionary, function(nvd3_model) { - nvd3_model.xAxis.tickFormat(function() { return ''; }); - }); + nvd3.draw(nv.models.multiBarHorizontalChart(), chart, request_dictionary); } }); diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/scatterplot/scatterplot.js --- a/config/plugins/visualizations/charts/static/charts/scatterplot/scatterplot.js +++ b/config/plugins/visualizations/charts/static/charts/scatterplot/scatterplot.js @@ -18,9 +18,6 @@ nvd3_model.showDistX(true) .showDistY(true) .color(d3.scale.category10().range()); - nvd3_model.xAxis.tickFormat(d3.format('.02f')); - nvd3_model.yAxis.tickFormat(d3.format('.02f')); - }); } }); diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/stackedarea/config.js --- a/config/plugins/visualizations/charts/static/charts/stackedarea/config.js +++ b/config/plugins/visualizations/charts/static/charts/stackedarea/config.js @@ -1,7 +1,7 @@ define(['plugin/charts/_nvd3/config'], function(nvd3_config) { return $.extend(true, {}, nvd3_config, { - title : 'Stacked area', + title : 'Stacked area' }); }); \ No newline at end of file diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/charts/stackedarea/stackedarea.js --- a/config/plugins/visualizations/charts/static/charts/stackedarea/stackedarea.js +++ b/config/plugins/visualizations/charts/static/charts/stackedarea/stackedarea.js @@ -19,7 +19,6 @@ nvd3_model.x(function(d) { return d.x }) .y(function(d) { return d.y }) .clipEdge(true); - nvd3_model.xAxis.tickFormat(function() { return ''; }); }); } }); diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/library/ui-table-form.js --- a/config/plugins/visualizations/charts/static/library/ui-table-form.js +++ b/config/plugins/visualizations/charts/static/library/ui-table-form.js @@ -36,7 +36,8 @@ var field = null; // create select field - switch(settings_def.type) { + var type = settings_def.type; + switch(type) { // text input field case 'text' : field = new Ui.Input({ @@ -46,6 +47,15 @@ } }); break; + // select field + case 'select' : + field = new Ui.Select.View({ + data: settings_def.data, + onchange: function() { + model.set(id, field.value()); + } + }); + break; // slider input field case 'slider' : field = new Ui.Input({ @@ -55,6 +65,10 @@ } }); break; + // slider input field + case 'separator' : + field = $('<div/>'); + break; // skip unkown types default: console.log('ui-table-form:_add', 'Unknown setting type (' + settings_def.type + ')'); @@ -63,19 +77,26 @@ } // set value - if (!model.get(id)) { - model.set(id, settings_def.init); + if (type != 'separator') { + if (!model.get(id)) { + model.set(id, settings_def.init); + } + field.value(model.get(id)); + + // combine field and info + var $input = $('<div/>'); + $input.append(field.$el); + $input.append('<div class="toolParamHelp">' + settings_def.info + '</div>'); + + // add row to table + this.table.add('<span style="white-space: nowrap;">' + settings_def.title + '</span>'); + this.table.add($input); + } else { + this.table.add('<h6 style="white-space: nowrap;">' + settings_def.title + ':<h6/>'); + this.table.add($('<div/>')); } - field.value(model.get(id)); - // combine field and info - var $input = $('<div/>'); - $input.append(field.$el); - $input.append('<div class="toolParamHelp">' + settings_def.info + '</div>'); - - // add row to table - this.table.add('<span style="white-space: nowrap;">' + settings_def.title + ':</span>'); - this.table.add($input); + // add to table this.table.append(id); } }); diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/library/ui.select.js --- a/config/plugins/visualizations/charts/static/library/ui.select.js +++ b/config/plugins/visualizations/charts/static/library/ui.select.js @@ -2,7 +2,7 @@ define(['utils/utils'], function(Utils) { // plugin -return Backbone.View.extend( +var View = Backbone.View.extend( { // options optionsDefault: { @@ -213,4 +213,8 @@ } }); +return { + View: View +} + }); diff -r a2f88681c8d9a3bf8d5f124be7ddf365c2e33eab -r a384ace015505cdea2dafa907a04e9689aa4ec20 config/plugins/visualizations/charts/static/views/group.js --- a/config/plugins/visualizations/charts/static/views/group.js +++ b/config/plugins/visualizations/charts/static/views/group.js @@ -93,7 +93,7 @@ // create select field var data_def = chart_settings.columns[id]; - var select = new Ui.Select({ + var select = new Ui.Select.View({ id : 'select_' + id, gid : id, onchange : function(value) { Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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galaxy-commits March 2014