1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/c0af07ce3b0b/
Changeset: c0af07ce3b0b
User: davebgx
Date: 2014-05-09 15:57:26
Summary: Clean up twilltestcase.py, fix functional tests for tools with spaces in the tool ID.
Affected #: 3 files
diff -r f6bf49aca8da9707937ebaebbfa869d10735dc81 -r c0af07ce3b0beb686cee26428dfcc229ebe34334 test/base/interactor.py
--- a/test/base/interactor.py
+++ b/test/base/interactor.py
@@ -474,8 +474,8 @@
.order_by( desc( galaxy.model.History.table.c.create_time ) ) \
.first()
assert latest_history is not None, "Problem retrieving latest_history from database"
- if len( self.twill_test_case.get_history_as_data_list() ) > 0:
- raise AssertionError("ToolTestCase.do_it failed")
+ if len( self.twill_test_case.get_hids_in_history( self.twill_test_case.get_latest_history()[ 'id' ] ) ) > 0:
+ raise AssertionError("ToolTestCase.do_it failed to create a new empty history")
return latest_history
def delete_history( self, latest_history ):
This diff is so big that we needed to truncate the remainder.
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/521fead56253/
Changeset: 521fead56253
User: dannon
Date: 2014-05-08 17:47:24
Summary: Update authenticate/baseauth doc with sample usage.
Affected #: 1 file
diff -r fc7de175ea2f59b0389a74f30e1152ff4563ad0e -r 521fead562531f96564c0e08f2c3ac523a92c6e5 lib/galaxy/webapps/galaxy/api/authenticate.py
--- a/lib/galaxy/webapps/galaxy/api/authenticate.py
+++ b/lib/galaxy/webapps/galaxy/api/authenticate.py
@@ -1,5 +1,14 @@
"""
API key retrieval through BaseAuth
+Sample usage:
+
+curl --user zipzap@foo.com:password http://localhost:8080/api/authenticate/baseauth
+
+Returns:
+
+{
+ "api_key": "baa4d6e3a156d3033f05736255f195f9"
+}
"""
from base64 import b64decode
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/d6826c29e15a/
Changeset: d6826c29e15a
User: jmchilton
Date: 2014-05-08 16:14:24
Summary: Add some documentation to job_conf.xml.sample_advanced about LWR caching.
Affected #: 1 file
diff -r 56d4cb37d62700e5baa94cc63e56041556844c43 -r d6826c29e15a1f17553ae2fe2b149ef65ac4da9d job_conf.xml.sample_advanced
--- a/job_conf.xml.sample_advanced
+++ b/job_conf.xml.sample_advanced
@@ -28,6 +28,14 @@
file actions are remote executable. --><!-- <param id="url">amqp://guest:guest@localhost:5672//</param> --><!-- <param id="manager">_default_</param> -->
+ <!-- *Experimental Caching*: Uncomment next parameters to enable
+ caching and specify the number of caching threads to enable on Galaxy
+ side. Likely will not work with newer features such as MQ support.
+ If this is enabled be sure to specify a `file_cache_dir` in the remote
+ LWR's main configuration file.
+ -->
+ <!-- <param id="cache">True</param> -->
+ <!-- <param id="transfer_threads">2</param> --></plugin><plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" /><plugin id="condor" type="runner" load="galaxy.jobs.runners.condor:CondorJobRunner" />
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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