Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 24dba3b479ab270c302902d78997058bd85975ce
https://github.com/galaxyproject/galaxy/commit/24dba3b479ab270c302902d78997…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-10-20 (Tue, 20 Oct 2015)
Changed paths:
M lib/galaxy/tools/parser/interface.py
Log Message:
-----------
Fix small bug in galaxy.tools.parser.interface.
Commit: 652bd0fc30f1e69d7683f48fcc44543db65af97c
https://github.com/galaxyproject/galaxy/commit/652bd0fc30f1e69d7683f48fcc44…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-10-20 (Tue, 20 Oct 2015)
Changed paths:
M lib/galaxy/tools/parser/yaml.py
M test/functional/tools/simple_constructs.yml
Log Message:
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Support selections in interface dict rep of tools.
Expose and test through experimental YAML representation of tools. This doesn't represent official support of (vastly superior) YAML tools, this representation continues to serve as an easy way to exercise the abstract tool parsing interface.
Brings simple_constructs.yml and simple_constructs.xml further in line also.
Test:
./run_tests.sh -framework -id simple_constructs_y
Commit: 849458f37b1184c9be0fd35b0f3e3bb60e9a4e7f
https://github.com/galaxyproject/galaxy/commit/849458f37b1184c9be0fd35b0f3e…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-10-21 (Wed, 21 Oct 2015)
Changed paths:
M lib/galaxy/tools/parser/interface.py
M lib/galaxy/tools/parser/yaml.py
M test/functional/tools/simple_constructs.yml
Log Message:
-----------
Merge pull request #955 from common-workflow-language/yaml_select
Improvements and fixes for abstract tool interface
Compare: https://github.com/galaxyproject/galaxy/compare/320724a183fb...849458f37b11
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 0c0197d855882b625e51091b467f48b916b2a2e9
https://github.com/galaxyproject/galaxy/commit/0c0197d855882b625e51091b467f…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-10-15 (Thu, 15 Oct 2015)
Changed paths:
M lib/galaxy/model/__init__.py
M lib/galaxy/objectstore/__init__.py
Log Message:
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StorableObject: parent to MetadataFile and Dataset
Makes the documentation clearer
Commit: 86c0e273aad64efb4f827fbbee06c58a69f3317d
https://github.com/galaxyproject/galaxy/commit/86c0e273aad64efb4f827fbbee06…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-10-15 (Thu, 15 Oct 2015)
Changed paths:
M lib/galaxy/objectstore/__init__.py
M test/unit/test_objectstore.py
Log Message:
-----------
pep257 compliant doc upgrade
Line wrapped to 79 charecters, except for some doc summary lines.
Dropped the no-op, unused CachingObjectStore
Renamed `create_object_in_session()` to `_create_object_in_session()` to mark
it as private.
Commit: bf2e59d69ad703e3559ccc14d6dd04b1048f89fa
https://github.com/galaxyproject/galaxy/commit/bf2e59d69ad703e3559ccc14d6dd…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-10-15 (Thu, 15 Oct 2015)
Changed paths:
M lib/galaxy/jobs/command_factory.py
M lib/galaxy/model/__init__.py
M lib/galaxy/objectstore/__init__.py
Log Message:
-----------
fix doc build errors
Commit: 5b4880df8019394047c9a4cea66c039ab51f5fc4
https://github.com/galaxyproject/galaxy/commit/5b4880df8019394047c9a4cea66c…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-10-15 (Thu, 15 Oct 2015)
Changed paths:
M lib/galaxy/jobs/command_factory.py
M lib/galaxy/model/__init__.py
M lib/galaxy/objectstore/__init__.py
Log Message:
-----------
flake8 / sphinx cleanup
Commit: b3bad81fb2da8fb8d158019612a6837526b64746
https://github.com/galaxyproject/galaxy/commit/b3bad81fb2da8fb8d158019612a6…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-10-15 (Thu, 15 Oct 2015)
Changed paths:
M CONTRIBUTING.md
Log Message:
-----------
doc tox
Commit: 13a8e4b2ee2149814786fc079bb2505281e67419
https://github.com/galaxyproject/galaxy/commit/13a8e4b2ee2149814786fc079bb2…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-10-15 (Thu, 15 Oct 2015)
Changed paths:
M lib/galaxy/objectstore/__init__.py
Log Message:
-----------
explaining
Commit: 1a5bff0e891242e057ac4119e9237fd540a794f6
https://github.com/galaxyproject/galaxy/commit/1a5bff0e891242e057ac4119e923…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-10-15 (Thu, 15 Oct 2015)
Changed paths:
M lib/galaxy/objectstore/__init__.py
Log Message:
-----------
remove whitespace
Commit: 304670455540fffe9cf417da310e4bf6da403844
https://github.com/galaxyproject/galaxy/commit/304670455540fffe9cf417da310e…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-10-20 (Tue, 20 Oct 2015)
Changed paths:
M lib/galaxy/objectstore/__init__.py
Log Message:
-----------
Revert most of the 79-char linewrapping in objectstore -- we may want to revisit some of the longer function definitions, but this reverts them to how they were prior to the documentation overhaul.
Commit: 4f0ec1eaf262f170877863687215e3657df087bc
https://github.com/galaxyproject/galaxy/commit/4f0ec1eaf262f170877863687215…
Author: Michael R. Crusoe <michael.crusoe(a)gmail.com>
Date: 2015-10-21 (Wed, 21 Oct 2015)
Changed paths:
M lib/galaxy/objectstore/__init__.py
Log Message:
-----------
Merge pull request #1 from dannon/storableobject
Revert most of the 79-char linewrapping in objectstore
Commit: 320724a183fb6391fa54d3e385f01af11c45aecf
https://github.com/galaxyproject/galaxy/commit/320724a183fb6391fa54d3e385f0…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-10-21 (Wed, 21 Oct 2015)
Changed paths:
M CONTRIBUTING.md
M lib/galaxy/jobs/command_factory.py
M lib/galaxy/model/__init__.py
M lib/galaxy/objectstore/__init__.py
M test/unit/test_objectstore.py
Log Message:
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Merge pull request #853 from mr-c/storableobject
doc updates for ObjectStore
Compare: https://github.com/galaxyproject/galaxy/compare/e5cde4f8143f...320724a183fb
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: bc9972bae27d9b24904744c280c9d52f873d43d2
https://github.com/galaxyproject/galaxy/commit/bc9972bae27d9b24904744c280c9…
Author: carlfeberhard <carlfeberhard(a)gmail.com>
Date: 2015-10-19 (Mon, 19 Oct 2015)
Changed paths:
M test/casperjs/anon-history-tests.js
M test/casperjs/api-hda-tests.js
M test/casperjs/api-history-tests.js
M test/casperjs/hda-state-tests.js
M test/casperjs/history-panel-tests.js
M test/casperjs/modules/historypanel.js
Log Message:
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Testing: update casperjs functional tests; change expected size string; remove nice_size from expected history api keys; remove test for rerun button on uploaded dataset; attempt to fix linux+python unicode error in hda api tests
Commit: 4b3bc68ae05c47156c3f8f3607bb5ceff901e982
https://github.com/galaxyproject/galaxy/commit/4b3bc68ae05c47156c3f8f3607bb…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-10-20 (Tue, 20 Oct 2015)
Changed paths:
M test/casperjs/anon-history-tests.js
M test/casperjs/api-hda-tests.js
M test/casperjs/api-history-tests.js
M test/casperjs/hda-state-tests.js
M test/casperjs/history-panel-tests.js
M test/casperjs/modules/historypanel.js
Log Message:
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Merge pull request #944 from carlfeberhard/1510.casper
Testing: update casperjs functional tests; change expected size strin…
Compare: https://github.com/galaxyproject/galaxy/compare/6ee7f77cb341...4b3bc68ae05c