Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: a03d2b5c15aa7c645ef2a8d2fce464567b53a56f
https://github.com/galaxyproject/infrastructure-playbook/commit/a03d2b5c15a…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-19 (Thu, 19 Nov 2015)
Changed paths:
A galaxyenv/host_vars/leeroy.galaxyproject.org.yml
R galaxyenv/host_vars/n2.galaxyproject.org.yml
M galaxyenv/host_vars/westvleteren.galaxyproject.org.yml
M galaxyenv/inventory
M galaxyenv/secret_group_vars/all.yml
A galaxyenv/secret_host_vars/leeroy.galaxyproject.org.yml
R galaxyenv/secret_host_vars/n2.galaxyproject.org.yml
M galaxyenv/secret_host_vars/orval.galaxyproject.org.yml
M galaxyenv/secret_host_vars/westvleteren.galaxyproject.org.yml
M roles/linuxbrew/tasks/main.yml
Log Message:
-----------
jenkins is dead, long live jenkins
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: b25b8c3f243e87a196a6cb0fa23328ee7c7e26f7
https://github.com/galaxyproject/galaxy/commit/b25b8c3f243e87a196a6cb0fa233…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M lib/galaxy/tools/parser/xml.py
M lib/galaxy/tools/test.py
M test/base/twilltestcase.py
A test/functional/tools/maxseconds.xml
M test/functional/tools/samples_tool_conf.xml
Log Message:
-----------
Revise and fix waiting for tool tests.
- maxseconds on test tag stopped being respected at some point, fix that.
- maxseconds on test tag stopped being parsed at some later point, fix that.
- Revise default behavior so it can be overridden with yet another testing environment variable GALAXY_TEST_DEFAULT_WAIT.
- Add test case to ensure there is no future regression of these behaviors.
Commit: d2bab13fa92a87a3c4959d782ba0bf061ecf07db
https://github.com/galaxyproject/galaxy/commit/d2bab13fa92a87a3c4959d782ba0…
Author: Nicola Soranzo <nsoranzo(a)tiscali.it>
Date: 2015-11-19 (Thu, 19 Nov 2015)
Changed paths:
M lib/galaxy/tools/parser/xml.py
M lib/galaxy/tools/test.py
M test/base/twilltestcase.py
A test/functional/tools/maxseconds.xml
M test/functional/tools/samples_tool_conf.xml
Log Message:
-----------
Merge pull request #1119 from jmchilton/maxseconds
Revise and fix waiting for tool tests.
Compare: https://github.com/galaxyproject/galaxy/compare/7ab070e9df6e...d2bab13fa92a
Branch: refs/heads/master
Home: https://github.com/galaxyproject/usegalaxy-playbook
Commit: 15e3e529e1c9dddbf9d2dc8dde8f1e9c55076f2f
https://github.com/galaxyproject/usegalaxy-playbook/commit/15e3e529e1c9dddb…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M templates/supervisor/galaxy.conf.j2
Log Message:
-----------
Set $HOME for Galaxy processes.
Commit: 1cb189cec659569cebbb2053ac62feb79f76c13b
https://github.com/galaxyproject/usegalaxy-playbook/commit/1cb189cec659569c…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml
M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml
M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml
Log Message:
-----------
Test mutable configs
Commit: 9fe17d3e77e75e7af7ad2394287f2b4050c40fe9
https://github.com/galaxyproject/usegalaxy-playbook/commit/9fe17d3e77e75e7a…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
A roles/galaxyprojectdotorg.interactive_environments/README.md
A roles/galaxyprojectdotorg.interactive_environments/defaults/main.yml
A roles/galaxyprojectdotorg.interactive_environments/handlers/main.yml
A roles/galaxyprojectdotorg.interactive_environments/meta/.galaxy_install_info
A roles/galaxyprojectdotorg.interactive_environments/meta/main.yml
A roles/galaxyprojectdotorg.interactive_environments/tasks/docker_ssl.yml
A roles/galaxyprojectdotorg.interactive_environments/tasks/extract_component.yml
A roles/galaxyprojectdotorg.interactive_environments/tasks/install_dependencies.yml
A roles/galaxyprojectdotorg.interactive_environments/tasks/main.yml
A roles/galaxyprojectdotorg.interactive_environments/tasks/supervisor.yml
A roles/galaxyprojectdotorg.interactive_environments/tasks/synchronize_components.yml
A roles/galaxyprojectdotorg.interactive_environments/tasks/webserver_conf.yml
A roles/galaxyprojectdotorg.interactive_environments/templates/_prefix.j2
A roles/galaxyprojectdotorg.interactive_environments/templates/config.ini.j2
A roles/galaxyprojectdotorg.interactive_environments/templates/ipython_apache.conf.j2
A roles/galaxyprojectdotorg.interactive_environments/templates/ipython_nginx.conf.j2
A roles/galaxyprojectdotorg.interactive_environments/templates/proxy_supervisor.conf.j2
Log Message:
-----------
Add the interactive_environments role
Commit: 9d483c5c7cfb38539cabd9fecdaca23857cef6e6
https://github.com/galaxyproject/usegalaxy-playbook/commit/9d483c5c7cfb3853…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M galaxy.yml
A stage/files/interactive_environments/plugins/.ansible_ie_role_current_version
A stage/files/interactive_environments/plugins/common/templates/ie.mako
A stage/files/interactive_environments/plugins/interactive_environments.dtd
A stage/files/interactive_environments/plugins/ipython/config/ipython.ini.sample
A stage/files/interactive_environments/plugins/ipython/config/ipython.xml
A stage/files/interactive_environments/plugins/ipython/static/js/ipython.js
A stage/files/interactive_environments/plugins/ipython/templates/ipython.mako
A stage/files/interactive_environments/plugins/ipython/templates/notebook.ipynb
A stage/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample
A stage/files/interactive_environments/plugins/rstudio/config/rstudio.xml
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/prng4.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rng.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rsa.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.big.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.min.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/base64.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/jsbn.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/prng4.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rng.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rsa.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/base64.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/jsbn.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/prng4.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rng.js
A stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rsa.js
A stage/files/interactive_environments/plugins/rstudio/static/js/rstudio.js
A stage/files/interactive_environments/plugins/rstudio/templates/rstudio.mako
A stage/files/interactive_environments/proxy/.ansible_ie_role_current_version
A stage/files/interactive_environments/proxy/Dockerfile
A stage/files/interactive_environments/proxy/README.md
A stage/files/interactive_environments/proxy/lib/main.js
A stage/files/interactive_environments/proxy/lib/mapper.js
A stage/files/interactive_environments/proxy/lib/proxy.js
A stage/files/interactive_environments/proxy/package.json
M stage/group_vars/all.yml
M stage/group_vars/galaxyservers.yml
M stage/secret_vars/galaxyservers.yml
Log Message:
-----------
Update Test and use the interactive_environments role to deploy IPython
Commit: ac7af1a513fe1c3f3a121398ebfb912734bd5c1e
https://github.com/galaxyproject/usegalaxy-playbook/commit/ac7af1a513fe1c3f…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
A production/files/interactive_environments/plugins/.ansible_ie_role_current_version
A production/files/interactive_environments/plugins/common/templates/ie.mako
A production/files/interactive_environments/plugins/interactive_environments.dtd
A production/files/interactive_environments/plugins/ipython/config/ipython.ini.sample
A production/files/interactive_environments/plugins/ipython/config/ipython.xml
A production/files/interactive_environments/plugins/ipython/static/js/ipython.js
A production/files/interactive_environments/plugins/ipython/templates/ipython.mako
A production/files/interactive_environments/plugins/ipython/templates/notebook.ipynb
A production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample
A production/files/interactive_environments/plugins/rstudio/config/rstudio.xml
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/prng4.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rng.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rsa.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.big.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.min.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/base64.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/jsbn.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/prng4.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rng.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rsa.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/base64.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/jsbn.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/prng4.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rng.js
A production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rsa.js
A production/files/interactive_environments/plugins/rstudio/static/js/rstudio.js
A production/files/interactive_environments/plugins/rstudio/templates/rstudio.mako
A production/files/interactive_environments/proxy/.ansible_ie_role_current_version
A production/files/interactive_environments/proxy/Dockerfile
A production/files/interactive_environments/proxy/README.md
A production/files/interactive_environments/proxy/lib/main.js
A production/files/interactive_environments/proxy/lib/mapper.js
A production/files/interactive_environments/proxy/lib/proxy.js
A production/files/interactive_environments/proxy/package.json
M production/group_vars/all.yml
M production/group_vars/galaxyservers.yml
M production/host_vars/galaxy-web-01.tacc.utexas.edu.yml
M production/secret_vars/galaxyservers.yml
Log Message:
-----------
Deploy the IPython IE on Main
Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/23c400852d03...…
Branch: refs/heads/release_15.10
Home: https://github.com/galaxyproject/galaxy
Commit: 05f3da308d6a58dc8528f317fa6ea4ffa1fb7610
https://github.com/galaxyproject/galaxy/commit/05f3da308d6a58dc8528f317fa6e…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M lib/galaxy/util/xml_macros.py
M test/unit/tools/test_tool_loader.py
Log Message:
-----------
Fix macro bug with empty CDATA being None instead of ''.
Fixes galaxyproject/planemo#362 thanks for the report @erasche.
Test using the following command:
```
nosetests test/unit/tools/test_tool_loader.py
```
Commit: eb16ba3743a7e42cc9ad43f0d7a3eb926ba60cd8
https://github.com/galaxyproject/galaxy/commit/eb16ba3743a7e42cc9ad43f0d7a3…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M lib/galaxy/util/xml_macros.py
M test/unit/tools/test_tool_loader.py
Log Message:
-----------
Merge pull request #1122 from jmchilton/empty_cdata_macro
[15.10] Fix macro bug with empty CDATA being None instead of ''.
Compare: https://github.com/galaxyproject/galaxy/compare/73f46f4e0814...eb16ba3743a7