Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 937f99b851e2078152c851a0b552c00b99167747
https://github.com/galaxyproject/galaxy/commit/937f99b851e2078152c851a0b552…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2015-11-15 (Sun, 15 Nov 2015)
Changed paths:
M lib/galaxy/webapps/tool_shed/api/repositories.py
Log Message:
-----------
Fix API installation of tool_dependencies
This should fix an installation issue with tool_dependencies via the API.
Tool dependency repositories to not have any tools specified and with this no metadata associated.
It was broken in https://github.com/galaxyproject/galaxy/commit/bb6a784f13ff3f91762244d44884…
So I think this should be part of 15.10.
Thanks to Greg for fixing this one.
Commit: 040118aae35da2c72fbf6332b32e8f3e0025a341
https://github.com/galaxyproject/galaxy/commit/040118aae35da2c72fbf6332b32e…
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2015-11-16 (Mon, 16 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/remote_files.py
Log Message:
-----------
Encode unicode string before passing to hashlib.sha1(). Fixes #673.
Commit: 3ffa607c15a70a532a7d21a0b3b1a46171e53171
https://github.com/galaxyproject/galaxy/commit/3ffa607c15a70a532a7d21a0b3b1…
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M client/galaxy/scripts/galaxy.menu.js
M static/maps/galaxy.menu.js.map
M static/scripts/galaxy.menu.js
Log Message:
-----------
Deprecate old library UI in the "Shared Data" menu.
Commit: e61e30cde549c448375b555aadfc85b235b4871a
https://github.com/galaxyproject/galaxy/commit/e61e30cde549c448375b555aadfc…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M lib/galaxy/webapps/tool_shed/api/repositories.py
Log Message:
-----------
Merge pull request #1100 from martenson/fix-ts-api-install
[15.10] Fix API installation of tool_dependencies
Commit: 05e66827d40151c0cd1729299fa82a510138359e
https://github.com/galaxyproject/galaxy/commit/05e66827d40151c0cd1729299fa8…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M client/galaxy/scripts/galaxy.menu.js
M static/maps/galaxy.menu.js.map
M static/scripts/galaxy.menu.js
Log Message:
-----------
Merge pull request #1112 from nsoranzo/release_15.10_data_libraries_beta
[15.10] Deprecate old library UI in the "Shared Data" menu.
Commit: 27dc31ace9a4e3a28ab2416c8f9cdbe4735c7063
https://github.com/galaxyproject/galaxy/commit/27dc31ace9a4e3a28ab2416c8f9c…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/remote_files.py
Log Message:
-----------
Merge pull request #1106 from nsoranzo/release_15.07_library_import_utf8
[15.07] Encode unicode string before passing to hashlib.sha1().
Commit: 73f46f4e08141f78927056fa3e4709d0ab323972
https://github.com/galaxyproject/galaxy/commit/73f46f4e08141f78927056fa3e47…
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/remote_files.py
Log Message:
-----------
Merge branch 'release_15.07' into release_15.10
Commit: c252987b4c5febb7fa10db3c7359449f325fc9ca
https://github.com/galaxyproject/galaxy/commit/c252987b4c5febb7fa10db3c7359…
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M client/galaxy/scripts/galaxy.menu.js
M lib/galaxy/webapps/galaxy/api/remote_files.py
M static/maps/galaxy.menu.js.map
M static/scripts/galaxy.menu.js
Log Message:
-----------
Merge branch 'master' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/3d933edd32dd...c252987b4c5f
Branch: refs/heads/master
Home: https://github.com/galaxyproject/galaxy
Commit: d824cca31fcebe97b8c7cfd1040eecbb9e5f03d3
https://github.com/galaxyproject/galaxy/commit/d824cca31fcebe97b8c7cfd1040e…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-12 (Thu, 12 Nov 2015)
Changed paths:
M config/plugins/interactive_environments/ipython/config/ipython.ini.sample
M config/plugins/interactive_environments/ipython/templates/ipython.mako
M lib/galaxy/web/base/interactive_environments.py
Log Message:
-----------
In interactive environments, the /import volume can now be made
conditional. Also, fix a bug when using a proxy for the node proxy and
cookie_path is /
Commit: c4351413265796dacc15b8e3fc7382b8514f5b59
https://github.com/galaxyproject/galaxy/commit/c4351413265796dacc15b8e3fc73…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-13 (Fri, 13 Nov 2015)
Changed paths:
M config/plugins/interactive_environments/ipython/config/ipython.ini.sample
Log Message:
-----------
Built image tag differs from intended.
Commit: 64b084067c73cea1de455e4816d73101c3752165
https://github.com/galaxyproject/galaxy/commit/64b084067c73cea1de455e4816d7…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-13 (Fri, 13 Nov 2015)
Changed paths:
M config/plugins/interactive_environments/ipython/config/ipython.ini.sample
M config/plugins/interactive_environments/ipython/templates/ipython.mako
M lib/galaxy/web/base/interactive_environments.py
Log Message:
-----------
Merge pull request #1076 from natefoo/ie-conditional-import-volume
[15.10] Fix a bug in IEs when proxying the proxy
Commit: 75e7e4c2cf7a0cb18b8096c8119e4b0cb207e2a3
https://github.com/galaxyproject/galaxy/commit/75e7e4c2cf7a0cb18b8096c8119e…
Author: Dave B <dave(a)bx.psu.edu>
Date: 2015-11-14 (Sat, 14 Nov 2015)
Changed paths:
M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py
Log Message:
-----------
Fix 500 error when attempting to update installed repository.
Commit: 7150983aab78e4ceb71f8ad2592369523899d768
https://github.com/galaxyproject/galaxy/commit/7150983aab78e4ceb71f8ad25923…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-14 (Sat, 14 Nov 2015)
Changed paths:
M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py
Log Message:
-----------
Merge pull request #1093 from martenson/release_15.10
[15.10] Fix 500 error when attempting to update installed repository.
Commit: 937f99b851e2078152c851a0b552c00b99167747
https://github.com/galaxyproject/galaxy/commit/937f99b851e2078152c851a0b552…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2015-11-15 (Sun, 15 Nov 2015)
Changed paths:
M lib/galaxy/webapps/tool_shed/api/repositories.py
Log Message:
-----------
Fix API installation of tool_dependencies
This should fix an installation issue with tool_dependencies via the API.
Tool dependency repositories to not have any tools specified and with this no metadata associated.
It was broken in https://github.com/galaxyproject/galaxy/commit/bb6a784f13ff3f91762244d44884…
So I think this should be part of 15.10.
Thanks to Greg for fixing this one.
Commit: 040118aae35da2c72fbf6332b32e8f3e0025a341
https://github.com/galaxyproject/galaxy/commit/040118aae35da2c72fbf6332b32e…
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2015-11-16 (Mon, 16 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/remote_files.py
Log Message:
-----------
Encode unicode string before passing to hashlib.sha1(). Fixes #673.
Commit: 3ffa607c15a70a532a7d21a0b3b1a46171e53171
https://github.com/galaxyproject/galaxy/commit/3ffa607c15a70a532a7d21a0b3b1…
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M client/galaxy/scripts/galaxy.menu.js
M static/maps/galaxy.menu.js.map
M static/scripts/galaxy.menu.js
Log Message:
-----------
Deprecate old library UI in the "Shared Data" menu.
Commit: e61e30cde549c448375b555aadfc85b235b4871a
https://github.com/galaxyproject/galaxy/commit/e61e30cde549c448375b555aadfc…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M lib/galaxy/webapps/tool_shed/api/repositories.py
Log Message:
-----------
Merge pull request #1100 from martenson/fix-ts-api-install
[15.10] Fix API installation of tool_dependencies
Commit: 05e66827d40151c0cd1729299fa82a510138359e
https://github.com/galaxyproject/galaxy/commit/05e66827d40151c0cd1729299fa8…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M client/galaxy/scripts/galaxy.menu.js
M static/maps/galaxy.menu.js.map
M static/scripts/galaxy.menu.js
Log Message:
-----------
Merge pull request #1112 from nsoranzo/release_15.10_data_libraries_beta
[15.10] Deprecate old library UI in the "Shared Data" menu.
Commit: 27dc31ace9a4e3a28ab2416c8f9cdbe4735c7063
https://github.com/galaxyproject/galaxy/commit/27dc31ace9a4e3a28ab2416c8f9c…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/remote_files.py
Log Message:
-----------
Merge pull request #1106 from nsoranzo/release_15.07_library_import_utf8
[15.07] Encode unicode string before passing to hashlib.sha1().
Commit: 73f46f4e08141f78927056fa3e4709d0ab323972
https://github.com/galaxyproject/galaxy/commit/73f46f4e08141f78927056fa3e47…
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/remote_files.py
Log Message:
-----------
Merge branch 'release_15.07' into release_15.10
Compare: https://github.com/galaxyproject/galaxy/compare/a3034ab6d99d...73f46f4e0814
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: 611c8be1579632adec55900235f0266c12654ad8
https://github.com/galaxyproject/infrastructure-playbook/commit/611c8be1579…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-11-17 (Tue, 17 Nov 2015)
Changed paths:
M ansible.cfg
A galaxyenv/playbook.yml
R playbook.yml
A taccenv/group_vars/galaxyservers.yml
A taccenv/inventory
A taccenv/playbook.yml
Log Message:
-----------
Minor restructuring and add a couple TACC hosts for use of the packages role