galaxy-commits February 2015

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commit/galaxy-central: guerler: ToolForm: More style adjustments
by commits-noreply＠bitbucket.org 15 Feb '15

15 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/174b83c8f952/ Changeset: 174b83c8f952 User: guerler Date: 2015-02-15 04:25:40+00:00 Summary: ToolForm: More style adjustments Affected #: 6 files diff -r e1626f34250516152e979cd5aeb421b74fc4c39f -r 174b83c8f95274f430e8eedaa8022a3876b5305a client/galaxy/scripts/mvc/tools/tools-input.js --- a/client/galaxy/scripts/mvc/tools/tools-input.js +++ b/client/galaxy/scripts/mvc/tools/tools-input.js @@ -130,9 +130,9 @@ '<div class="ui-table-form-field">'; // add help - if (options.help) { + //if (options.help) { tmp += '<div class="ui-table-form-info">' + options.help + '</div>'; - } + //} // finalize tmp += '</div>' + diff -r e1626f34250516152e979cd5aeb421b74fc4c39f -r 174b83c8f95274f430e8eedaa8022a3876b5305a client/galaxy/scripts/mvc/ui/ui-misc.js --- a/client/galaxy/scripts/mvc/ui/ui-misc.js +++ b/client/galaxy/scripts/mvc/ui/ui-misc.js @@ -447,7 +447,7 @@ _template: function(options) { var tmpl = '<div id="' + options.id + '" >'; if (options.info) { - tmpl += '<label>' + options.info + '</label>'; + tmpl += '<div>' + options.info + '</div>'; } tmpl += '<hidden value="' + options.value + '"/>' + '</div>'; diff -r e1626f34250516152e979cd5aeb421b74fc4c39f -r 174b83c8f95274f430e8eedaa8022a3876b5305a static/scripts/mvc/tools/tools-input.js --- a/static/scripts/mvc/tools/tools-input.js +++ b/static/scripts/mvc/tools/tools-input.js @@ -130,9 +130,9 @@ '<div class="ui-table-form-field">'; // add help - if (options.help) { + //if (options.help) { tmp += '<div class="ui-table-form-info">' + options.help + '</div>'; - } + //} // finalize tmp += '</div>' + diff -r e1626f34250516152e979cd5aeb421b74fc4c39f -r 174b83c8f95274f430e8eedaa8022a3876b5305a static/scripts/mvc/ui/ui-misc.js --- a/static/scripts/mvc/ui/ui-misc.js +++ b/static/scripts/mvc/ui/ui-misc.js @@ -447,7 +447,7 @@ _template: function(options) { var tmpl = '<div id="' + options.id + '" >'; if (options.info) { - tmpl += '<label>' + options.info + '</label>'; + tmpl += '<div>' + options.info + '</div>'; } tmpl += '<hidden value="' + options.value + '"/>' + '</div>'; diff -r e1626f34250516152e979cd5aeb421b74fc4c39f -r 174b83c8f95274f430e8eedaa8022a3876b5305a static/scripts/packed/mvc/tools/tools-input.js --- a/static/scripts/packed/mvc/tools/tools-input.js +++ b/static/scripts/packed/mvc/tools/tools-input.js @@ -1,1 +1,1 @@ -define([],function(){return Backbone.View.extend({initialize:function(d,c){this.app=d;this.text_enable=d.options.text_enable||"Enable";this.text_disable=d.options.text_disable||"Disable";this.cls_enable=d.options.cls_enable||"fa fa-plus-square";this.cls_disable=d.options.cls_disable||"fa fa-minus-square";this.field=c.field;this.default_value=c.default_value;this.setElement(this._template(c));this.$field=this.$el.find(".ui-table-form-field");this.$optional=this.$el.find(".ui-table-form-optional");this.$optional_icon=this.$el.find(".ui-table-form-optional").find(".icon");this.$error_text=this.$el.find(".ui-table-form-error-text");this.$error=this.$el.find(".ui-table-form-error");this.$field.prepend(this.field.$el);this.field.skip=false;var b=this.field.value&&this.field.value();this.field.skip=Boolean(c.optional&&(b===null||b===""||b===this.default_value||String(b)===String(this.default_value)||Number(b)===Number(this.default_value)||JSON.stringify(b)===JSON.stringify(this.default_value)));this._refresh();var a=this;this.$optional.on("click",function(){a.field.skip=!a.field.skip;a._refresh();a.app.trigger("refresh")})},error:function(a){this.$error_text.html(a);this.$error.show();this.$el.addClass("ui-error")},reset:function(){this.$error.hide();this.$el.removeClass("ui-error")},_refresh:function(){this.$optional_icon.removeClass().addClass("icon");if(!this.field.skip){this.$field.fadeIn("fast");this._tooltip(this.text_disable,this.cls_disable)}else{this.$field.hide();this._tooltip(this.text_enable,this.cls_enable);this.field.value&&this.field.value(this.default_value)}},_tooltip:function(b,a){if(this.$optional.length){this.$optional_icon.addClass(a).tooltip({placement:"bottom"}).attr("data-original-title",b).tooltip("fixTitle").tooltip("hide")}},_template:function(a){var b='<div class="ui-table-form-element"><div class="ui-table-form-error ui-error"><span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/></div><div class="ui-table-form-title">';if(a.optional){b+='<div class="ui-table-form-optional"><i class="icon"/>'+a.label+"</div>"}else{b+=a.label}b+='</div><div class="ui-table-form-field">';if(a.help){b+='<div class="ui-table-form-info">'+a.help+"</div>"}b+="</div></div>";return b}})}); \ No newline at end of file +define([],function(){return Backbone.View.extend({initialize:function(d,c){this.app=d;this.text_enable=d.options.text_enable||"Enable";this.text_disable=d.options.text_disable||"Disable";this.cls_enable=d.options.cls_enable||"fa fa-plus-square";this.cls_disable=d.options.cls_disable||"fa fa-minus-square";this.field=c.field;this.default_value=c.default_value;this.setElement(this._template(c));this.$field=this.$el.find(".ui-table-form-field");this.$optional=this.$el.find(".ui-table-form-optional");this.$optional_icon=this.$el.find(".ui-table-form-optional").find(".icon");this.$error_text=this.$el.find(".ui-table-form-error-text");this.$error=this.$el.find(".ui-table-form-error");this.$field.prepend(this.field.$el);this.field.skip=false;var b=this.field.value&&this.field.value();this.field.skip=Boolean(c.optional&&(b===null||b===""||b===this.default_value||String(b)===String(this.default_value)||Number(b)===Number(this.default_value)||JSON.stringify(b)===JSON.stringify(this.default_value)));this._refresh();var a=this;this.$optional.on("click",function(){a.field.skip=!a.field.skip;a._refresh();a.app.trigger("refresh")})},error:function(a){this.$error_text.html(a);this.$error.show();this.$el.addClass("ui-error")},reset:function(){this.$error.hide();this.$el.removeClass("ui-error")},_refresh:function(){this.$optional_icon.removeClass().addClass("icon");if(!this.field.skip){this.$field.fadeIn("fast");this._tooltip(this.text_disable,this.cls_disable)}else{this.$field.hide();this._tooltip(this.text_enable,this.cls_enable);this.field.value&&this.field.value(this.default_value)}},_tooltip:function(b,a){if(this.$optional.length){this.$optional_icon.addClass(a).tooltip({placement:"bottom"}).attr("data-original-title",b).tooltip("fixTitle").tooltip("hide")}},_template:function(a){var b='<div class="ui-table-form-element"><div class="ui-table-form-error ui-error"><span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/></div><div class="ui-table-form-title">';if(a.optional){b+='<div class="ui-table-form-optional"><i class="icon"/>'+a.label+"</div>"}else{b+=a.label}b+='</div><div class="ui-table-form-field">';b+='<div class="ui-table-form-info">'+a.help+"</div>";b+="</div></div>";return b}})}); \ No newline at end of file diff -r e1626f34250516152e979cd5aeb421b74fc4c39f -r 174b83c8f95274f430e8eedaa8022a3876b5305a static/scripts/packed/mvc/ui/ui-misc.js --- a/static/scripts/packed/mvc/ui/ui-misc.js +++ b/static/scripts/packed/mvc/ui/ui-misc.js @@ -1,1 +1,1 @@ -define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-button-check","mvc/ui/ui-modal"],function(e,h,i,m,l,r,d,b){var q=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(s){return'<img class="ui-image '+s.cls+'" src="'+s.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options))},title:function(s){this.$el.html(s)},_template:function(s){return'<label class="ui-label '+s.cls+'">'+s.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},_template:function(s){return'<div><span class="fa '+s.icon+'" class="ui-icon"/> '+s.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},_template:function(s){var t='<button id="'+s.id+'" type="submit" style="float: '+s.floating+';" type="button" class="'+s.cls+'">';if(s.icon){t+='<i class="icon fa '+s.icon+'"></i> '}t+=s.title+"</button>";return t}});var o=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var s=this;$(this.el).on("click",function(){$(".tooltip").hide();if(t.onclick&&!s.disabled){t.onclick()}});$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},setIcon:function(s){this.$("i").removeClass(this.options.icon).addClass(s);this.options.icon=s},_template:function(s){var t="";if(s.title){t="width: auto;"}var u='<div id="'+s.id+'" style="float: '+s.floating+"; "+t+'" class="'+s.cls+'">';if(s.title){u+='<div class="button"><i class="icon fa '+s.icon+'"/> <span class="title">'+s.title+"</span></div>"}else{u+='<i class="icon fa '+s.icon+'"/>'}u+="</div>";return u}});var p=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",s.onclick)},_template:function(s){return'<div><a href="javascript:void(0)" class="ui-anchor '+s.cls+'">'+s.title+"</a></div>"}});var a=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(t.message);this.$el.fadeIn();if(this.timeout){window.clearTimeout(this.timeout)}if(!t.persistent){var s=this;this.timeout=window.setTimeout(function(){if(s.$el.is(":visible")){s.$el.fadeOut()}else{s.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(s){return'<div class="ui-message alert alert-'+s.status+'"/>'}});var f=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault);this.setElement(this._template(this.options));var s=this;if(this.options.onclick){this.$el.on("submit",function(v){var u=s.$el.find("#search");s.options.onclick(u.val())})}},_template:function(s){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+s.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var n=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(t){this.options=e.merge(t,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var s=this;this.$el.on("input",function(){if(s.options.onchange){s.options.onchange(s.$el.val())}})},value:function(s){if(s!==undefined){this.$el.val(s)}return this.$el.val()},_template:function(s){if(s.area){return'<textarea id="'+s.id+'" class="ui-textarea '+s.cls+'"></textarea>'}else{return'<input id="'+s.id+'" type="'+s.type+'" value="'+s.value+'" placeholder="'+s.placeholder+'" class="ui-input '+s.cls+'">'}}});var k=Backbone.View.extend({initialize:function(s){this.options=s;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(s){if(s!==undefined){this.$("hidden").val(s)}return this.$("hidden").val()},_template:function(t){var s='<div id="'+t.id+'" >';if(t.info){s+="<label>"+t.info+"</label>"}s+='<hidden value="'+t.value+'"/></div>';return s}});return{Anchor:p,Button:g,ButtonIcon:o,ButtonCheck:d,ButtonMenu:r,Icon:c,Image:q,Input:n,Label:j,Message:a,Modal:b,RadioButton:m.RadioButton,Checkbox:m.Checkbox,Radio:m.Radio,Searchbox:f,Select:h,Hidden:k,Slider:i,Drilldown:l}}); \ No newline at end of file +define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-button-check","mvc/ui/ui-modal"],function(e,h,i,m,l,r,d,b){var q=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(s){return'<img class="ui-image '+s.cls+'" src="'+s.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options))},title:function(s){this.$el.html(s)},_template:function(s){return'<label class="ui-label '+s.cls+'">'+s.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},_template:function(s){return'<div><span class="fa '+s.icon+'" class="ui-icon"/> '+s.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},_template:function(s){var t='<button id="'+s.id+'" type="submit" style="float: '+s.floating+';" type="button" class="'+s.cls+'">';if(s.icon){t+='<i class="icon fa '+s.icon+'"></i> '}t+=s.title+"</button>";return t}});var o=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var s=this;$(this.el).on("click",function(){$(".tooltip").hide();if(t.onclick&&!s.disabled){t.onclick()}});$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},setIcon:function(s){this.$("i").removeClass(this.options.icon).addClass(s);this.options.icon=s},_template:function(s){var t="";if(s.title){t="width: auto;"}var u='<div id="'+s.id+'" style="float: '+s.floating+"; "+t+'" class="'+s.cls+'">';if(s.title){u+='<div class="button"><i class="icon fa '+s.icon+'"/> <span class="title">'+s.title+"</span></div>"}else{u+='<i class="icon fa '+s.icon+'"/>'}u+="</div>";return u}});var p=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",s.onclick)},_template:function(s){return'<div><a href="javascript:void(0)" class="ui-anchor '+s.cls+'">'+s.title+"</a></div>"}});var a=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(s){this.options=e.merge(s,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(t.message);this.$el.fadeIn();if(this.timeout){window.clearTimeout(this.timeout)}if(!t.persistent){var s=this;this.timeout=window.setTimeout(function(){if(s.$el.is(":visible")){s.$el.fadeOut()}else{s.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(s){return'<div class="ui-message alert alert-'+s.status+'"/>'}});var f=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault);this.setElement(this._template(this.options));var s=this;if(this.options.onclick){this.$el.on("submit",function(v){var u=s.$el.find("#search");s.options.onclick(u.val())})}},_template:function(s){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+s.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var n=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(t){this.options=e.merge(t,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var s=this;this.$el.on("input",function(){if(s.options.onchange){s.options.onchange(s.$el.val())}})},value:function(s){if(s!==undefined){this.$el.val(s)}return this.$el.val()},_template:function(s){if(s.area){return'<textarea id="'+s.id+'" class="ui-textarea '+s.cls+'"></textarea>'}else{return'<input id="'+s.id+'" type="'+s.type+'" value="'+s.value+'" placeholder="'+s.placeholder+'" class="ui-input '+s.cls+'">'}}});var k=Backbone.View.extend({initialize:function(s){this.options=s;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(s){if(s!==undefined){this.$("hidden").val(s)}return this.$("hidden").val()},_template:function(t){var s='<div id="'+t.id+'" >';if(t.info){s+="<div>"+t.info+"</div>"}s+='<hidden value="'+t.value+'"/></div>';return s}});return{Anchor:p,Button:g,ButtonIcon:o,ButtonCheck:d,ButtonMenu:r,Icon:c,Image:q,Input:n,Label:j,Message:a,Modal:b,RadioButton:m.RadioButton,Checkbox:m.Checkbox,Radio:m.Radio,Searchbox:f,Select:h,Hidden:k,Slider:i,Drilldown:l}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: guerler: ToolForm: Fix style
by commits-noreply＠bitbucket.org 15 Feb '15

15 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/e1626f342505/ Changeset: e1626f342505 User: guerler Date: 2015-02-15 04:05:19+00:00 Summary: ToolForm: Fix style Affected #: 2 files diff -r 702d2812a02633a7f019ad54dc3340bba996d498 -r e1626f34250516152e979cd5aeb421b74fc4c39f static/style/blue/base.css --- a/static/style/blue/base.css +++ b/static/style/blue/base.css @@ -148,7 +148,7 @@ .form-control::-moz-placeholder{color:#999} .form-control:-ms-input-placeholder{color:#999} .form-control::-webkit-input-placeholder{color:#999} -.form-control,.ui-input,.ui-textarea,.ui-options .ui-options-list,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #aaa;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)} +.form-control{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #aaa;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)} .form-control[disabled],.form-control[readonly],fieldset[disabled] .form-control{cursor:not-allowed;background-color:#eee} textarea.form-control{height:auto} .form-group{margin-bottom:15px} @@ -1414,7 +1414,7 @@ .ui-table tbody,.ui-table-plain tbody{cursor:pointer} .ui-table-plain{table-layout:fixed}.ui-table-plain tbody{cursor:auto !important}.ui-table-plain tbody td{padding:0px !important;border:none !important} .ui-table-plain .ui-table-section{border-left:solid 3px #ebd9b2;border-radius:5px !important;margin-bottom:5px;padding-left:10px} -.ui-table-form-element{margin-top:5px;margin-bottom:5px;overflow:hidden}.ui-table-form-element .ui-table-form-title{font-weight:bold}.ui-table-form-element .ui-table-form-title .ui-table-form-optional{cursor:pointer}.ui-table-form-element .ui-table-form-title .ui-table-form-optional .icon{margin-right:5px;font-size:1.2em} +.ui-table-form-element{margin-top:5px;margin-bottom:5px;overflow:visible}.ui-table-form-element .ui-table-form-title{font-weight:bold}.ui-table-form-element .ui-table-form-title .ui-table-form-optional{cursor:pointer}.ui-table-form-element .ui-table-form-title .ui-table-form-optional .icon{margin-right:5px;font-size:1.2em} .ui-table-form-element .ui-table-form-field{margin-top:5px}.ui-table-form-element .ui-table-form-field .ui-table-form-info{clear:both !important} .ui-table-form-separator{font-weight:bold;font-size:0.9em} .ui-table-form-error{display:none}.ui-table-form-error .ui-table-form-error-text{padding-left:5px} @@ -1433,7 +1433,7 @@ .ui-portlet-limited,.ui-portlet-narrow,.ui-portlet-narrow{max-width:900px} .ui-popover{max-width:700px;display:none}.ui-popover .popover-close{position:absolute;right:10px;top:7px;font-size:1.2em;cursor:pointer} .ui-popover .popover-title{padding:4px 10px} -.ui-input,.ui-textarea,.ui-options .ui-options-list,.ui-form-slider .ui-form-slider-text,.ui-select-multiple,.ui-textarea,.ui-options .ui-options-list,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{background:transparent} +.ui-input,.ui-textarea,.ui-options .ui-options-list,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{width:100%;display:block;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;border:1px solid #aaa;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075)}.ui-input[disabled],.ui-input[readonly],fieldset[disabled] .ui-input{cursor:not-allowed;background-color:#eee} .ui-textarea{height:100px !important} .ui-options .ui-options-list{height:100% !important}.ui-options .ui-options-list input[type=checkbox],.ui-options .ui-options-list input[type=radio]{display:none} .ui-options .ui-options-list label{margin:0px;cursor:pointer} diff -r 702d2812a02633a7f019ad54dc3340bba996d498 -r e1626f34250516152e979cd5aeb421b74fc4c39f static/style/src/less/ui.less --- a/static/style/src/less/ui.less +++ b/static/style/src/less/ui.less @@ -164,7 +164,7 @@ } margin-top: @ui-margin-vertical; margin-bottom: @ui-margin-vertical; - overflow: hidden; + overflow: visible; } .ui-table-form-separator { @@ -315,8 +315,22 @@ // input elements .ui-input { - &:extend(.form-control); - background: transparent; + width: 100%; + display: block; + height: @input-height-base; + padding: @padding-base-vertical @padding-base-horizontal; + font-size: @font-size-base; + line-height: @line-height-base; + color: @input-color; + border: 1px solid @input-border; + border-radius: @input-border-radius; + .box-shadow(inset 0 1px 1px rgba(0,0,0,.075)); + &[disabled], + &[readonly], + fieldset[disabled] & { + cursor: not-allowed; + background-color: @input-bg-disabled; + } } .ui-textarea { @@ -373,7 +387,6 @@ } } - .ui-form-slider { display: inline-block; width: 100%; Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: ToolForm: Adjust optional state detection
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/702d2812a026/ Changeset: 702d2812a026 User: guerler Date: 2015-02-14 22:17:08+00:00 Summary: ToolForm: Adjust optional state detection Affected #: 3 files diff -r ff02bec0e956daf8498ce8d7fe70bd44e2987013 -r 702d2812a02633a7f019ad54dc3340bba996d498 client/galaxy/scripts/mvc/tools/tools-input.js --- a/client/galaxy/scripts/mvc/tools/tools-input.js +++ b/client/galaxy/scripts/mvc/tools/tools-input.js @@ -37,9 +37,10 @@ this.field.skip = false; var v = this.field.value && this.field.value(); this.field.skip = Boolean(options.optional && - (v === null || v == this.default_value || - Number(v) == Number(this.default_value) || - JSON.stringify(v) == JSON.stringify(this.default_value))); + (v === null || v === '' || v === this.default_value || + String(v) === String(this.default_value) || + Number(v) === Number(this.default_value) || + JSON.stringify(v) === JSON.stringify(this.default_value))); // refresh view this._refresh(); diff -r ff02bec0e956daf8498ce8d7fe70bd44e2987013 -r 702d2812a02633a7f019ad54dc3340bba996d498 static/scripts/mvc/tools/tools-input.js --- a/static/scripts/mvc/tools/tools-input.js +++ b/static/scripts/mvc/tools/tools-input.js @@ -37,9 +37,10 @@ this.field.skip = false; var v = this.field.value && this.field.value(); this.field.skip = Boolean(options.optional && - (v === null || v == this.default_value || - Number(v) == Number(this.default_value) || - JSON.stringify(v) == JSON.stringify(this.default_value))); + (v === null || v === '' || v === this.default_value || + String(v) === String(this.default_value) || + Number(v) === Number(this.default_value) || + JSON.stringify(v) === JSON.stringify(this.default_value))); // refresh view this._refresh(); diff -r ff02bec0e956daf8498ce8d7fe70bd44e2987013 -r 702d2812a02633a7f019ad54dc3340bba996d498 static/scripts/packed/mvc/tools/tools-input.js --- a/static/scripts/packed/mvc/tools/tools-input.js +++ b/static/scripts/packed/mvc/tools/tools-input.js @@ -1,1 +1,1 @@ -define([],function(){return Backbone.View.extend({initialize:function(d,c){this.app=d;this.text_enable=d.options.text_enable||"Enable";this.text_disable=d.options.text_disable||"Disable";this.cls_enable=d.options.cls_enable||"fa fa-plus-square";this.cls_disable=d.options.cls_disable||"fa fa-minus-square";this.field=c.field;this.default_value=c.default_value;this.setElement(this._template(c));this.$field=this.$el.find(".ui-table-form-field");this.$optional=this.$el.find(".ui-table-form-optional");this.$optional_icon=this.$el.find(".ui-table-form-optional").find(".icon");this.$error_text=this.$el.find(".ui-table-form-error-text");this.$error=this.$el.find(".ui-table-form-error");this.$field.prepend(this.field.$el);this.field.skip=false;var b=this.field.value&&this.field.value();this.field.skip=Boolean(c.optional&&(b===null||b==this.default_value||Number(b)==Number(this.default_value)||JSON.stringify(b)==JSON.stringify(this.default_value)));this._refresh();var a=this;this.$optional.on("click",function(){a.field.skip=!a.field.skip;a._refresh();a.app.trigger("refresh")})},error:function(a){this.$error_text.html(a);this.$error.show();this.$el.addClass("ui-error")},reset:function(){this.$error.hide();this.$el.removeClass("ui-error")},_refresh:function(){this.$optional_icon.removeClass().addClass("icon");if(!this.field.skip){this.$field.fadeIn("fast");this._tooltip(this.text_disable,this.cls_disable)}else{this.$field.hide();this._tooltip(this.text_enable,this.cls_enable);this.field.value&&this.field.value(this.default_value)}},_tooltip:function(b,a){if(this.$optional.length){this.$optional_icon.addClass(a).tooltip({placement:"bottom"}).attr("data-original-title",b).tooltip("fixTitle").tooltip("hide")}},_template:function(a){var b='<div class="ui-table-form-element"><div class="ui-table-form-error ui-error"><span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/></div><div class="ui-table-form-title">';if(a.optional){b+='<div class="ui-table-form-optional"><i class="icon"/>'+a.label+"</div>"}else{b+=a.label}b+='</div><div class="ui-table-form-field">';if(a.help){b+='<div class="ui-table-form-info">'+a.help+"</div>"}b+="</div></div>";return b}})}); \ No newline at end of file +define([],function(){return Backbone.View.extend({initialize:function(d,c){this.app=d;this.text_enable=d.options.text_enable||"Enable";this.text_disable=d.options.text_disable||"Disable";this.cls_enable=d.options.cls_enable||"fa fa-plus-square";this.cls_disable=d.options.cls_disable||"fa fa-minus-square";this.field=c.field;this.default_value=c.default_value;this.setElement(this._template(c));this.$field=this.$el.find(".ui-table-form-field");this.$optional=this.$el.find(".ui-table-form-optional");this.$optional_icon=this.$el.find(".ui-table-form-optional").find(".icon");this.$error_text=this.$el.find(".ui-table-form-error-text");this.$error=this.$el.find(".ui-table-form-error");this.$field.prepend(this.field.$el);this.field.skip=false;var b=this.field.value&&this.field.value();this.field.skip=Boolean(c.optional&&(b===null||b===""||b===this.default_value||String(b)===String(this.default_value)||Number(b)===Number(this.default_value)||JSON.stringify(b)===JSON.stringify(this.default_value)));this._refresh();var a=this;this.$optional.on("click",function(){a.field.skip=!a.field.skip;a._refresh();a.app.trigger("refresh")})},error:function(a){this.$error_text.html(a);this.$error.show();this.$el.addClass("ui-error")},reset:function(){this.$error.hide();this.$el.removeClass("ui-error")},_refresh:function(){this.$optional_icon.removeClass().addClass("icon");if(!this.field.skip){this.$field.fadeIn("fast");this._tooltip(this.text_disable,this.cls_disable)}else{this.$field.hide();this._tooltip(this.text_enable,this.cls_enable);this.field.value&&this.field.value(this.default_value)}},_tooltip:function(b,a){if(this.$optional.length){this.$optional_icon.addClass(a).tooltip({placement:"bottom"}).attr("data-original-title",b).tooltip("fixTitle").tooltip("hide")}},_template:function(a){var b='<div class="ui-table-form-element"><div class="ui-table-form-error ui-error"><span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/></div><div class="ui-table-form-title">';if(a.optional){b+='<div class="ui-table-form-optional"><i class="icon"/>'+a.label+"</div>"}else{b+=a.label}b+='</div><div class="ui-table-form-field">';if(a.help){b+='<div class="ui-table-form-info">'+a.help+"</div>"}b+="</div></div>";return b}})}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Workflow: Allow optional drill downs
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/ff02bec0e956/ Changeset: ff02bec0e956 User: guerler Date: 2015-02-14 21:37:53+00:00 Summary: Workflow: Allow optional drill downs Affected #: 3 files diff -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d -r ff02bec0e956daf8498ce8d7fe70bd44e2987013 client/galaxy/scripts/mvc/tools/tools-form-workflow.js --- a/client/galaxy/scripts/mvc/tools/tools-form-workflow.js +++ b/client/galaxy/scripts/mvc/tools/tools-form-workflow.js @@ -33,7 +33,7 @@ // declare fields as optional Utils.deepeach(options.inputs, function(item) { if (item.type) { - item.optional = (['data', 'data_hidden', 'hidden', 'drill_down', 'repeat', 'conditional']).indexOf(item.type) == -1; + item.optional = (['data', 'data_hidden', 'hidden', 'repeat', 'conditional']).indexOf(item.type) == -1; } }); diff -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d -r ff02bec0e956daf8498ce8d7fe70bd44e2987013 static/scripts/mvc/tools/tools-form-workflow.js --- a/static/scripts/mvc/tools/tools-form-workflow.js +++ b/static/scripts/mvc/tools/tools-form-workflow.js @@ -33,7 +33,7 @@ // declare fields as optional Utils.deepeach(options.inputs, function(item) { if (item.type) { - item.optional = (['data', 'data_hidden', 'hidden', 'drill_down', 'repeat', 'conditional']).indexOf(item.type) == -1; + item.optional = (['data', 'data_hidden', 'hidden', 'repeat', 'conditional']).indexOf(item.type) == -1; } }); diff -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d -r ff02bec0e956daf8498ce8d7fe70bd44e2987013 static/scripts/packed/mvc/tools/tools-form-workflow.js --- a/static/scripts/packed/mvc/tools/tools-form-workflow.js +++ b/static/scripts/packed/mvc/tools/tools-form-workflow.js @@ -1,1 +1,1 @@ -define(["utils/utils","mvc/tools/tools-form-base"],function(b,a){var c=a.extend({initialize:function(e){this.node=workflow.active_node;if(!this.node){console.debug("FAILED - tools-form-workflow:initialize() - Node not found in workflow.");return}this.post_job_actions=this.node.post_job_actions||{};this.options=e;this.options.text_enable="Set in Advance";this.options.text_disable="Set at Runtime";this.options.is_dynamic=false;this.options.narrow=true;this.options.initial_errors=true;this.options.cls_portlet="ui-portlet-narrow";b.deepeach(e.inputs,function(f){if(f.type){f.optional=(["data","data_hidden","hidden","drill_down","repeat","conditional"]).indexOf(f.type)==-1}});b.deepeach(e.inputs,function(f){if(f.type){if(f.type=="conditional"){f.test_param.optional=false}}});var d=this;b.get({url:galaxy_config.root+"api/datatypes",cache:true,success:function(f){d.datatypes=f;d._makeSections(e.inputs);a.prototype.initialize.call(d,e)}})},_makeSections:function(d){d[b.uuid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:true,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var f=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(f){d[b.uuid()]={name:"pja__"+f+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+f])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}};d[b.uuid()]={name:"pja__"+f+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+f])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var e in this.node.output_terminals){d[b.uuid()]=this._makeSection(e)}}},_makeSection:function(h){var g=[];for(key in this.datatypes){g.push({0:this.datatypes[key],1:this.datatypes[key]})}g.sort(function(j,i){return j.label>i.label?1:j.label<i.label?-1:0});g.unshift({0:"Sequences",1:"Sequences"});g.unshift({0:"Roadmaps",1:"Roadmaps"});g.unshift({0:"Leave unchanged",1:""});var f={label:"Add Actions: '"+h+"'",type:"section",inputs:[{action:"RenameDatasetAction",argument:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the result dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information.'},{action:"ChangeDatatypeAction",argument:"newtype",label:"Change datatype",type:"select",ignore:"",options:g,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",argument:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{label:"Assign columns",type:"section",inputs:[{action:"ColumnSetAction",argument:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};var d=this;function e(n,o){o=o||[];o.push(n);for(var m in n.inputs){var k=n.inputs[m];if(k.action){k.name="pja__"+h+"__"+k.action;if(k.argument){k.name+="__"+k.argument}if(k.payload){for(var s in k.payload){var q=k.payload[s];k.payload[k.name+"__"+s]=q;delete q}}var r=d.post_job_actions[k.action+h];if(r){for(var l in o){o[l].expand=true}if(k.argument){k.value=r.action_arguments&&r.action_arguments[k.argument]||k.value}else{k.value="true"}}}if(k.inputs){e(k,o.slice(0))}}}e(f);return f},_buildModel:function(){Galaxy.modal.show({title:"Coming soon...",body:"This feature has not been implemented yet.",buttons:{Close:function(){Galaxy.modal.hide()}}})},_updateModel:function(e){var d=this;e={tool_id:this.options.id,tool_version:this.options.version,inputs:e};console.debug("tools-form-workflow::_refreshForm() - Refreshing states.");console.debug(e);var g=this.deferred.register();var f=galaxy_config.root+"api/workflows/build_module";b.request({type:"POST",url:f,data:e,success:function(h){d.node.update_field_data(h);d._errors(h&&h.tool_model);d.deferred.done(g);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(h)},error:function(h){d.deferred.done(g);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(h)}})}});return{View:c}}); \ No newline at end of file +define(["utils/utils","mvc/tools/tools-form-base"],function(b,a){var c=a.extend({initialize:function(e){this.node=workflow.active_node;if(!this.node){console.debug("FAILED - tools-form-workflow:initialize() - Node not found in workflow.");return}this.post_job_actions=this.node.post_job_actions||{};this.options=e;this.options.text_enable="Set in Advance";this.options.text_disable="Set at Runtime";this.options.is_dynamic=false;this.options.narrow=true;this.options.initial_errors=true;this.options.cls_portlet="ui-portlet-narrow";b.deepeach(e.inputs,function(f){if(f.type){f.optional=(["data","data_hidden","hidden","repeat","conditional"]).indexOf(f.type)==-1}});b.deepeach(e.inputs,function(f){if(f.type){if(f.type=="conditional"){f.test_param.optional=false}}});var d=this;b.get({url:galaxy_config.root+"api/datatypes",cache:true,success:function(f){d.datatypes=f;d._makeSections(e.inputs);a.prototype.initialize.call(d,e)}})},_makeSections:function(d){d[b.uuid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:true,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var f=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(f){d[b.uuid()]={name:"pja__"+f+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+f])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}};d[b.uuid()]={name:"pja__"+f+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+f])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var e in this.node.output_terminals){d[b.uuid()]=this._makeSection(e)}}},_makeSection:function(h){var g=[];for(key in this.datatypes){g.push({0:this.datatypes[key],1:this.datatypes[key]})}g.sort(function(j,i){return j.label>i.label?1:j.label<i.label?-1:0});g.unshift({0:"Sequences",1:"Sequences"});g.unshift({0:"Roadmaps",1:"Roadmaps"});g.unshift({0:"Leave unchanged",1:""});var f={label:"Add Actions: '"+h+"'",type:"section",inputs:[{action:"RenameDatasetAction",argument:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the result dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information.'},{action:"ChangeDatatypeAction",argument:"newtype",label:"Change datatype",type:"select",ignore:"",options:g,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",argument:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{label:"Assign columns",type:"section",inputs:[{action:"ColumnSetAction",argument:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};var d=this;function e(n,o){o=o||[];o.push(n);for(var m in n.inputs){var k=n.inputs[m];if(k.action){k.name="pja__"+h+"__"+k.action;if(k.argument){k.name+="__"+k.argument}if(k.payload){for(var s in k.payload){var q=k.payload[s];k.payload[k.name+"__"+s]=q;delete q}}var r=d.post_job_actions[k.action+h];if(r){for(var l in o){o[l].expand=true}if(k.argument){k.value=r.action_arguments&&r.action_arguments[k.argument]||k.value}else{k.value="true"}}}if(k.inputs){e(k,o.slice(0))}}}e(f);return f},_buildModel:function(){Galaxy.modal.show({title:"Coming soon...",body:"This feature has not been implemented yet.",buttons:{Close:function(){Galaxy.modal.hide()}}})},_updateModel:function(e){var d=this;e={tool_id:this.options.id,tool_version:this.options.version,inputs:e};console.debug("tools-form-workflow::_refreshForm() - Refreshing states.");console.debug(e);var g=this.deferred.register();var f=galaxy_config.root+"api/workflows/build_module";b.request({type:"POST",url:f,data:e,success:function(h){d.node.update_field_data(h);d._errors(h&&h.tool_model);d.deferred.done(g);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(h)},error:function(h){d.deferred.done(g);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(h)}})}});return{View:c}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: Ui: Fix class name
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/03b43380eaaf/ Changeset: 03b43380eaaf User: guerler Date: 2015-02-14 20:44:06+00:00 Summary: Ui: Fix class name Affected #: 5 files diff -r 6d494d75321150a815e3fc71fbd171f854dc1615 -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d client/galaxy/scripts/mvc/ui/ui-button-check.js --- a/client/galaxy/scripts/mvc/ui/ui-button-check.js +++ b/client/galaxy/scripts/mvc/ui/ui-button-check.js @@ -35,7 +35,7 @@ if (new_val !== undefined) { this.current = new_val; this.$el.removeClass() - .addClass('ui-checkbutton') + .addClass('ui-button-check') .addClass(this.options.icons[new_val]); this.options.onchange && this.options.onchange(new_val); } diff -r 6d494d75321150a815e3fc71fbd171f854dc1615 -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d static/scripts/mvc/ui/ui-button-check.js --- a/static/scripts/mvc/ui/ui-button-check.js +++ b/static/scripts/mvc/ui/ui-button-check.js @@ -35,7 +35,7 @@ if (new_val !== undefined) { this.current = new_val; this.$el.removeClass() - .addClass('ui-checkbutton') + .addClass('ui-button-check') .addClass(this.options.icons[new_val]); this.options.onchange && this.options.onchange(new_val); } diff -r 6d494d75321150a815e3fc71fbd171f854dc1615 -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d static/scripts/packed/mvc/ui/ui-button-check.js --- a/static/scripts/packed/mvc/ui/ui-button-check.js +++ b/static/scripts/packed/mvc/ui/ui-button-check.js @@ -1,1 +1,1 @@ -define(["utils/utils"],function(a){return Backbone.View.extend({optionsDefault:{icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0},initialize:function(c){this.options=a.merge(c,this.optionsDefault);this.setElement($("<div/>"));this.value(this.options.value);var b=this;this.$el.on("click",function(){b.current=(!b.current&&2)||0;b.value(b.current);b.options.onclick&&b.options.onclick()})},value:function(b){if(b!==undefined){this.current=b;this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.icons[b]);this.options.onchange&&this.options.onchange(b)}return this.current}})}); \ No newline at end of file +define(["utils/utils"],function(a){return Backbone.View.extend({optionsDefault:{icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0},initialize:function(c){this.options=a.merge(c,this.optionsDefault);this.setElement($("<div/>"));this.value(this.options.value);var b=this;this.$el.on("click",function(){b.current=(!b.current&&2)||0;b.value(b.current);b.options.onclick&&b.options.onclick()})},value:function(b){if(b!==undefined){this.current=b;this.$el.removeClass().addClass("ui-button-check").addClass(this.options.icons[b]);this.options.onchange&&this.options.onchange(b)}return this.current}})}); \ No newline at end of file diff -r 6d494d75321150a815e3fc71fbd171f854dc1615 -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d static/style/blue/base.css --- a/static/style/blue/base.css +++ b/static/style/blue/base.css @@ -1446,7 +1446,7 @@ .ui-form-slider .ui-form-slider-element{width:calc(100% - 110px);float:left;top:8px;left:10px} .ui-radiobutton{width:100%}.ui-radiobutton label{height:23px;line-height:1em} .ui-radiobutton i{padding-right:5px} -.ui-checkbutton{font-size:1.2em;width:1.2em;cursor:pointer} +.ui-button-check{font-size:1.2em;width:1.2em;cursor:pointer} .ui-select{position:relative}.ui-select .button{position:absolute;top:5px;right:5px} .ui-select .select2-container{width:100%} .ui-select select{position:relative;top:0px;height:27px;width:100%;padding-left:5px;padding-right:20px;cursor:pointer;background:transparent;-webkit-appearance:none;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px} diff -r 6d494d75321150a815e3fc71fbd171f854dc1615 -r 03b43380eaaf23a761d83f31a2c8fd045ba0c95d static/style/src/less/ui.less --- a/static/style/src/less/ui.less +++ b/static/style/src/less/ui.less @@ -403,7 +403,7 @@ } } -.ui-checkbutton { +.ui-button-check { font-size: 1.2em; width: 1.2em; cursor: pointer; Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: ToolForm: Use icon instead of text for optional parameters
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/6d494d753211/ Changeset: 6d494d753211 User: guerler Date: 2015-02-14 20:22:16+00:00 Summary: ToolForm: Use icon instead of text for optional parameters Affected #: 8 files diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 client/galaxy/scripts/mvc/tools/tools-form-workflow.js --- a/client/galaxy/scripts/mvc/tools/tools-form-workflow.js +++ b/client/galaxy/scripts/mvc/tools/tools-form-workflow.js @@ -21,8 +21,8 @@ this.options = options; // set labels - this.options.text_enable = 'In Advance'; - this.options.text_disable = 'At Runtime'; + this.options.text_enable = 'Set in Advance'; + this.options.text_disable = 'Set at Runtime'; // configure workflow style this.options.is_dynamic = false; diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 client/galaxy/scripts/mvc/tools/tools-input.js --- a/client/galaxy/scripts/mvc/tools/tools-input.js +++ b/client/galaxy/scripts/mvc/tools/tools-input.js @@ -9,27 +9,30 @@ initialize: function(app, options) { // link app this.app = app; - - // set text labels - this.text_enable = app.options.text_enable || 'Enable'; - this.text_disable = app.options.text_disable || 'Disable'; + + // set text labels and icons for optional button + this.text_enable = app.options.text_enable || 'Enable'; + this.text_disable = app.options.text_disable || 'Disable'; + this.cls_enable = app.options.cls_enable || 'fa fa-plus-square'; + this.cls_disable = app.options.cls_disable || 'fa fa-minus-square'; // link field this.field = options.field; this.default_value = options.default_value; - + // set element this.setElement(this._template(options)); - + // link elements this.$field = this.$el.find('.ui-table-form-field'); - this.$title_optional = this.$el.find('.ui-table-form-title-optional'); + this.$optional = this.$el.find('.ui-table-form-optional'); + this.$optional_icon = this.$el.find('.ui-table-form-optional').find('.icon'); this.$error_text = this.$el.find('.ui-table-form-error-text'); this.$error = this.$el.find('.ui-table-form-error'); - + // add field element this.$field.prepend(this.field.$el); - + // decide wether to expand or collapse optional fields this.field.skip = false; var v = this.field.value && this.field.value(); @@ -40,21 +43,21 @@ // refresh view this._refresh(); - + // add optional hide/show var self = this; - this.$title_optional.on('click', function() { + this.$optional.on('click', function() { // flip flag self.field.skip = !self.field.skip; - + // refresh view self._refresh(); - + // refresh state self.app.trigger('refresh'); }); }, - + /** Set error text */ error: function(text) { @@ -62,27 +65,46 @@ this.$error.show(); this.$el.addClass('ui-error'); }, - + /** Reset this view */ reset: function() { this.$error.hide(); this.$el.removeClass('ui-error'); }, - + /** Refresh element */ _refresh: function() { + // reset optional button + this.$optional_icon.removeClass().addClass('icon'); + + // identify state if (!this.field.skip) { + // enable input field this.$field.fadeIn('fast'); - this.$title_optional.html(this.text_disable); + this._tooltip(this.text_disable, this.cls_disable); + } else { + // disable input field this.$field.hide(); - this.$title_optional.html(this.text_enable); + this._tooltip(this.text_enable, this.cls_enable); + // reset field value this.field.value && this.field.value(this.default_value); } }, - + + /** Set tooltip text + */ + _tooltip: function(title, cls) { + if (this.$optional.length) { + this.$optional_icon.addClass(cls) + .tooltip({ placement: 'bottom' }) + .attr('data-original-title', title) + .tooltip('fixTitle').tooltip('hide'); + } + }, + /** Main Template */ _template: function(options) { @@ -91,30 +113,32 @@ '<div class="ui-table-form-error ui-error">' + '<span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/>' + '</div>' + - '<div class="ui-table-form-title-strong">'; - + '<div class="ui-table-form-title">'; + // is optional if (options.optional) { - tmp += options.label + - '<span>&nbsp[<span class="ui-table-form-title-optional"/>]</span>'; + tmp += '<div class="ui-table-form-optional">' + + '<i class="icon"/>' + options.label + + '</div>'; } else { - tmp += options.label; + tmp += options.label; } - + // finalize title tmp += '</div>' + '<div class="ui-table-form-field">'; + // add help if (options.help) { tmp += '<div class="ui-table-form-info">' + options.help + '</div>'; } - + // finalize tmp += '</div>' + '</div>'; - + // return input element return tmp; } }); -}); +}); \ No newline at end of file diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 static/scripts/mvc/tools/tools-form-workflow.js --- a/static/scripts/mvc/tools/tools-form-workflow.js +++ b/static/scripts/mvc/tools/tools-form-workflow.js @@ -21,8 +21,8 @@ this.options = options; // set labels - this.options.text_enable = 'In Advance'; - this.options.text_disable = 'At Runtime'; + this.options.text_enable = 'Set in Advance'; + this.options.text_disable = 'Set at Runtime'; // configure workflow style this.options.is_dynamic = false; diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 static/scripts/mvc/tools/tools-input.js --- a/static/scripts/mvc/tools/tools-input.js +++ b/static/scripts/mvc/tools/tools-input.js @@ -9,27 +9,30 @@ initialize: function(app, options) { // link app this.app = app; - - // set text labels - this.text_enable = app.options.text_enable || 'Enable'; - this.text_disable = app.options.text_disable || 'Disable'; + + // set text labels and icons for optional button + this.text_enable = app.options.text_enable || 'Enable'; + this.text_disable = app.options.text_disable || 'Disable'; + this.cls_enable = app.options.cls_enable || 'fa fa-plus-square'; + this.cls_disable = app.options.cls_disable || 'fa fa-minus-square'; // link field this.field = options.field; this.default_value = options.default_value; - + // set element this.setElement(this._template(options)); - + // link elements this.$field = this.$el.find('.ui-table-form-field'); - this.$title_optional = this.$el.find('.ui-table-form-title-optional'); + this.$optional = this.$el.find('.ui-table-form-optional'); + this.$optional_icon = this.$el.find('.ui-table-form-optional').find('.icon'); this.$error_text = this.$el.find('.ui-table-form-error-text'); this.$error = this.$el.find('.ui-table-form-error'); - + // add field element this.$field.prepend(this.field.$el); - + // decide wether to expand or collapse optional fields this.field.skip = false; var v = this.field.value && this.field.value(); @@ -40,21 +43,21 @@ // refresh view this._refresh(); - + // add optional hide/show var self = this; - this.$title_optional.on('click', function() { + this.$optional.on('click', function() { // flip flag self.field.skip = !self.field.skip; - + // refresh view self._refresh(); - + // refresh state self.app.trigger('refresh'); }); }, - + /** Set error text */ error: function(text) { @@ -62,27 +65,46 @@ this.$error.show(); this.$el.addClass('ui-error'); }, - + /** Reset this view */ reset: function() { this.$error.hide(); this.$el.removeClass('ui-error'); }, - + /** Refresh element */ _refresh: function() { + // reset optional button + this.$optional_icon.removeClass().addClass('icon'); + + // identify state if (!this.field.skip) { + // enable input field this.$field.fadeIn('fast'); - this.$title_optional.html(this.text_disable); + this._tooltip(this.text_disable, this.cls_disable); + } else { + // disable input field this.$field.hide(); - this.$title_optional.html(this.text_enable); + this._tooltip(this.text_enable, this.cls_enable); + // reset field value this.field.value && this.field.value(this.default_value); } }, - + + /** Set tooltip text + */ + _tooltip: function(title, cls) { + if (this.$optional.length) { + this.$optional_icon.addClass(cls) + .tooltip({ placement: 'bottom' }) + .attr('data-original-title', title) + .tooltip('fixTitle').tooltip('hide'); + } + }, + /** Main Template */ _template: function(options) { @@ -91,30 +113,32 @@ '<div class="ui-table-form-error ui-error">' + '<span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/>' + '</div>' + - '<div class="ui-table-form-title-strong">'; - + '<div class="ui-table-form-title">'; + // is optional if (options.optional) { - tmp += options.label + - '<span>&nbsp[<span class="ui-table-form-title-optional"/>]</span>'; + tmp += '<div class="ui-table-form-optional">' + + '<i class="icon"/>' + options.label + + '</div>'; } else { - tmp += options.label; + tmp += options.label; } - + // finalize title tmp += '</div>' + '<div class="ui-table-form-field">'; + // add help if (options.help) { tmp += '<div class="ui-table-form-info">' + options.help + '</div>'; } - + // finalize tmp += '</div>' + '</div>'; - + // return input element return tmp; } }); -}); +}); \ No newline at end of file diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 static/scripts/packed/mvc/tools/tools-form-workflow.js --- a/static/scripts/packed/mvc/tools/tools-form-workflow.js +++ b/static/scripts/packed/mvc/tools/tools-form-workflow.js @@ -1,1 +1,1 @@ -define(["utils/utils","mvc/tools/tools-form-base"],function(b,a){var c=a.extend({initialize:function(e){this.node=workflow.active_node;if(!this.node){console.debug("FAILED - tools-form-workflow:initialize() - Node not found in workflow.");return}this.post_job_actions=this.node.post_job_actions||{};this.options=e;this.options.text_enable="In Advance";this.options.text_disable="At Runtime";this.options.is_dynamic=false;this.options.narrow=true;this.options.initial_errors=true;this.options.cls_portlet="ui-portlet-narrow";b.deepeach(e.inputs,function(f){if(f.type){f.optional=(["data","data_hidden","hidden","drill_down","repeat","conditional"]).indexOf(f.type)==-1}});b.deepeach(e.inputs,function(f){if(f.type){if(f.type=="conditional"){f.test_param.optional=false}}});var d=this;b.get({url:galaxy_config.root+"api/datatypes",cache:true,success:function(f){d.datatypes=f;d._makeSections(e.inputs);a.prototype.initialize.call(d,e)}})},_makeSections:function(d){d[b.uuid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:true,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var f=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(f){d[b.uuid()]={name:"pja__"+f+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+f])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}};d[b.uuid()]={name:"pja__"+f+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+f])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var e in this.node.output_terminals){d[b.uuid()]=this._makeSection(e)}}},_makeSection:function(h){var g=[];for(key in this.datatypes){g.push({0:this.datatypes[key],1:this.datatypes[key]})}g.sort(function(j,i){return j.label>i.label?1:j.label<i.label?-1:0});g.unshift({0:"Sequences",1:"Sequences"});g.unshift({0:"Roadmaps",1:"Roadmaps"});g.unshift({0:"Leave unchanged",1:""});var f={label:"Add Actions: '"+h+"'",type:"section",inputs:[{action:"RenameDatasetAction",argument:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the result dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information.'},{action:"ChangeDatatypeAction",argument:"newtype",label:"Change datatype",type:"select",ignore:"",options:g,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",argument:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{label:"Assign columns",type:"section",inputs:[{action:"ColumnSetAction",argument:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};var d=this;function e(n,o){o=o||[];o.push(n);for(var m in n.inputs){var k=n.inputs[m];if(k.action){k.name="pja__"+h+"__"+k.action;if(k.argument){k.name+="__"+k.argument}if(k.payload){for(var s in k.payload){var q=k.payload[s];k.payload[k.name+"__"+s]=q;delete q}}var r=d.post_job_actions[k.action+h];if(r){for(var l in o){o[l].expand=true}if(k.argument){k.value=r.action_arguments&&r.action_arguments[k.argument]||k.value}else{k.value="true"}}}if(k.inputs){e(k,o.slice(0))}}}e(f);return f},_buildModel:function(){Galaxy.modal.show({title:"Coming soon...",body:"This feature has not been implemented yet.",buttons:{Close:function(){Galaxy.modal.hide()}}})},_updateModel:function(e){var d=this;e={tool_id:this.options.id,tool_version:this.options.version,inputs:e};console.debug("tools-form-workflow::_refreshForm() - Refreshing states.");console.debug(e);var g=this.deferred.register();var f=galaxy_config.root+"api/workflows/build_module";b.request({type:"POST",url:f,data:e,success:function(h){d.node.update_field_data(h);d._errors(h&&h.tool_model);d.deferred.done(g);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(h)},error:function(h){d.deferred.done(g);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(h)}})}});return{View:c}}); \ No newline at end of file +define(["utils/utils","mvc/tools/tools-form-base"],function(b,a){var c=a.extend({initialize:function(e){this.node=workflow.active_node;if(!this.node){console.debug("FAILED - tools-form-workflow:initialize() - Node not found in workflow.");return}this.post_job_actions=this.node.post_job_actions||{};this.options=e;this.options.text_enable="Set in Advance";this.options.text_disable="Set at Runtime";this.options.is_dynamic=false;this.options.narrow=true;this.options.initial_errors=true;this.options.cls_portlet="ui-portlet-narrow";b.deepeach(e.inputs,function(f){if(f.type){f.optional=(["data","data_hidden","hidden","drill_down","repeat","conditional"]).indexOf(f.type)==-1}});b.deepeach(e.inputs,function(f){if(f.type){if(f.type=="conditional"){f.test_param.optional=false}}});var d=this;b.get({url:galaxy_config.root+"api/datatypes",cache:true,success:function(f){d.datatypes=f;d._makeSections(e.inputs);a.prototype.initialize.call(d,e)}})},_makeSections:function(d){d[b.uuid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:true,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var f=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(f){d[b.uuid()]={name:"pja__"+f+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+f])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}};d[b.uuid()]={name:"pja__"+f+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+f])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var e in this.node.output_terminals){d[b.uuid()]=this._makeSection(e)}}},_makeSection:function(h){var g=[];for(key in this.datatypes){g.push({0:this.datatypes[key],1:this.datatypes[key]})}g.sort(function(j,i){return j.label>i.label?1:j.label<i.label?-1:0});g.unshift({0:"Sequences",1:"Sequences"});g.unshift({0:"Roadmaps",1:"Roadmaps"});g.unshift({0:"Leave unchanged",1:""});var f={label:"Add Actions: '"+h+"'",type:"section",inputs:[{action:"RenameDatasetAction",argument:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the result dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information.'},{action:"ChangeDatatypeAction",argument:"newtype",label:"Change datatype",type:"select",ignore:"",options:g,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",argument:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{label:"Assign columns",type:"section",inputs:[{action:"ColumnSetAction",argument:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",argument:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};var d=this;function e(n,o){o=o||[];o.push(n);for(var m in n.inputs){var k=n.inputs[m];if(k.action){k.name="pja__"+h+"__"+k.action;if(k.argument){k.name+="__"+k.argument}if(k.payload){for(var s in k.payload){var q=k.payload[s];k.payload[k.name+"__"+s]=q;delete q}}var r=d.post_job_actions[k.action+h];if(r){for(var l in o){o[l].expand=true}if(k.argument){k.value=r.action_arguments&&r.action_arguments[k.argument]||k.value}else{k.value="true"}}}if(k.inputs){e(k,o.slice(0))}}}e(f);return f},_buildModel:function(){Galaxy.modal.show({title:"Coming soon...",body:"This feature has not been implemented yet.",buttons:{Close:function(){Galaxy.modal.hide()}}})},_updateModel:function(e){var d=this;e={tool_id:this.options.id,tool_version:this.options.version,inputs:e};console.debug("tools-form-workflow::_refreshForm() - Refreshing states.");console.debug(e);var g=this.deferred.register();var f=galaxy_config.root+"api/workflows/build_module";b.request({type:"POST",url:f,data:e,success:function(h){d.node.update_field_data(h);d._errors(h&&h.tool_model);d.deferred.done(g);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(h)},error:function(h){d.deferred.done(g);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(h)}})}});return{View:c}}); \ No newline at end of file diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 static/scripts/packed/mvc/tools/tools-input.js --- a/static/scripts/packed/mvc/tools/tools-input.js +++ b/static/scripts/packed/mvc/tools/tools-input.js @@ -1,1 +1,1 @@ -define([],function(){return Backbone.View.extend({initialize:function(d,c){this.app=d;this.text_enable=d.options.text_enable||"Enable";this.text_disable=d.options.text_disable||"Disable";this.field=c.field;this.default_value=c.default_value;this.setElement(this._template(c));this.$field=this.$el.find(".ui-table-form-field");this.$title_optional=this.$el.find(".ui-table-form-title-optional");this.$error_text=this.$el.find(".ui-table-form-error-text");this.$error=this.$el.find(".ui-table-form-error");this.$field.prepend(this.field.$el);this.field.skip=false;var b=this.field.value&&this.field.value();this.field.skip=Boolean(c.optional&&(b===null||b==this.default_value||Number(b)==Number(this.default_value)||JSON.stringify(b)==JSON.stringify(this.default_value)));this._refresh();var a=this;this.$title_optional.on("click",function(){a.field.skip=!a.field.skip;a._refresh();a.app.trigger("refresh")})},error:function(a){this.$error_text.html(a);this.$error.show();this.$el.addClass("ui-error")},reset:function(){this.$error.hide();this.$el.removeClass("ui-error")},_refresh:function(){if(!this.field.skip){this.$field.fadeIn("fast");this.$title_optional.html(this.text_disable)}else{this.$field.hide();this.$title_optional.html(this.text_enable);this.field.value&&this.field.value(this.default_value)}},_template:function(a){var b='<div class="ui-table-form-element"><div class="ui-table-form-error ui-error"><span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/></div><div class="ui-table-form-title-strong">';if(a.optional){b+=a.label+'<span>&nbsp[<span class="ui-table-form-title-optional"/>]</span>'}else{b+=a.label}b+='</div><div class="ui-table-form-field">';if(a.help){b+='<div class="ui-table-form-info">'+a.help+"</div>"}b+="</div></div>";return b}})}); \ No newline at end of file +define([],function(){return Backbone.View.extend({initialize:function(d,c){this.app=d;this.text_enable=d.options.text_enable||"Enable";this.text_disable=d.options.text_disable||"Disable";this.cls_enable=d.options.cls_enable||"fa fa-plus-square";this.cls_disable=d.options.cls_disable||"fa fa-minus-square";this.field=c.field;this.default_value=c.default_value;this.setElement(this._template(c));this.$field=this.$el.find(".ui-table-form-field");this.$optional=this.$el.find(".ui-table-form-optional");this.$optional_icon=this.$el.find(".ui-table-form-optional").find(".icon");this.$error_text=this.$el.find(".ui-table-form-error-text");this.$error=this.$el.find(".ui-table-form-error");this.$field.prepend(this.field.$el);this.field.skip=false;var b=this.field.value&&this.field.value();this.field.skip=Boolean(c.optional&&(b===null||b==this.default_value||Number(b)==Number(this.default_value)||JSON.stringify(b)==JSON.stringify(this.default_value)));this._refresh();var a=this;this.$optional.on("click",function(){a.field.skip=!a.field.skip;a._refresh();a.app.trigger("refresh")})},error:function(a){this.$error_text.html(a);this.$error.show();this.$el.addClass("ui-error")},reset:function(){this.$error.hide();this.$el.removeClass("ui-error")},_refresh:function(){this.$optional_icon.removeClass().addClass("icon");if(!this.field.skip){this.$field.fadeIn("fast");this._tooltip(this.text_disable,this.cls_disable)}else{this.$field.hide();this._tooltip(this.text_enable,this.cls_enable);this.field.value&&this.field.value(this.default_value)}},_tooltip:function(b,a){if(this.$optional.length){this.$optional_icon.addClass(a).tooltip({placement:"bottom"}).attr("data-original-title",b).tooltip("fixTitle").tooltip("hide")}},_template:function(a){var b='<div class="ui-table-form-element"><div class="ui-table-form-error ui-error"><span class="fa fa-arrow-down"/><span class="ui-table-form-error-text"/></div><div class="ui-table-form-title">';if(a.optional){b+='<div class="ui-table-form-optional"><i class="icon"/>'+a.label+"</div>"}else{b+=a.label}b+='</div><div class="ui-table-form-field">';if(a.help){b+='<div class="ui-table-form-info">'+a.help+"</div>"}b+="</div></div>";return b}})}); \ No newline at end of file diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 static/style/blue/base.css --- a/static/style/blue/base.css +++ b/static/style/blue/base.css @@ -1414,10 +1414,8 @@ .ui-table tbody,.ui-table-plain tbody{cursor:pointer} .ui-table-plain{table-layout:fixed}.ui-table-plain tbody{cursor:auto !important}.ui-table-plain tbody td{padding:0px !important;border:none !important} .ui-table-plain .ui-table-section{border-left:solid 3px #ebd9b2;border-radius:5px !important;margin-bottom:5px;padding-left:10px} -.ui-table-form-element{margin-top:5px;margin-bottom:5px;overflow:hidden}.ui-table-form-element .ui-table-form-title-optional{font-weight:bold;text-decoration:underline;cursor:pointer} -.ui-table-form-element .ui-table-form-field{margin-top:5px} -.ui-table-form-title-strong{font-weight:bold} -.ui-table-form-info{clear:both !important} +.ui-table-form-element{margin-top:5px;margin-bottom:5px;overflow:hidden}.ui-table-form-element .ui-table-form-title{font-weight:bold}.ui-table-form-element .ui-table-form-title .ui-table-form-optional{cursor:pointer}.ui-table-form-element .ui-table-form-title .ui-table-form-optional .icon{margin-right:5px;font-size:1.2em} +.ui-table-form-element .ui-table-form-field{margin-top:5px}.ui-table-form-element .ui-table-form-field .ui-table-form-info{clear:both !important} .ui-table-form-separator{font-weight:bold;font-size:0.9em} .ui-table-form-error{display:none}.ui-table-form-error .ui-table-form-error-text{padding-left:5px} .ui-portlet,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow{border:solid #d6b161 1px;border-radius:3px;position:relative;clear:both;width:auto;height:100%}.ui-portlet .portlet-header,.ui-portlet-limited .portlet-header,.ui-portlet-narrow .portlet-header{background:#ebd9b2;border-bottom:solid #d6b161 1px;padding:2px 8px;overflow:visible;float:right;width:100%}.ui-portlet .portlet-header .portlet-title,.ui-portlet-limited .portlet-header .portlet-title,.ui-portlet-narrow .portlet-header .portlet-title{display:inline;vertical-align:middle}.ui-portlet .portlet-header .portlet-title .portlet-title-text,.ui-portlet-limited .portlet-header .portlet-title .portlet-title-text,.ui-portlet-narrow .portlet-header .portlet-title .portlet-title-text{vertical-align:middle;line-height:22px} @@ -1454,9 +1452,9 @@ .ui-select select{position:relative;top:0px;height:27px;width:100%;padding-left:5px;padding-right:20px;cursor:pointer;background:transparent;-webkit-appearance:none;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px} .ui-select-content .ui-options{float:left;padding-top:2px} .ui-color-picker .ui-color-picker-header{cursor:pointer} -.ui-color-picker .ui-color-picker-value{float:left;border-radius:3px;border:solid 1px #000000;width:12px;height:12px;margin-bottom:10px;margin-right:5px} +.ui-color-picker .ui-color-picker-value{float:left;border-radius:3px;border:solid 1px #000000;width:12px;height:12px;margin-right:5px} .ui-color-picker .ui-color-picker-label{float:left;line-height:1.2em} -.ui-color-picker .ui-color-picker-view{display:none;float:left;overflow:auto;height:100%}.ui-color-picker .ui-color-picker-view .ui-color-picker-panel{width:210px}.ui-color-picker .ui-color-picker-view .ui-color-picker-panel .ui-color-picker-content{margin-bottom:15px}.ui-color-picker .ui-color-picker-view .ui-color-picker-panel .ui-color-picker-content .label{padding-bottom:2px} +.ui-color-picker .ui-color-picker-view{height:100%;overflow:auto;display:none;float:left;margin-top:10px}.ui-color-picker .ui-color-picker-view .ui-color-picker-panel{width:210px}.ui-color-picker .ui-color-picker-view .ui-color-picker-panel .ui-color-picker-content{margin-bottom:15px}.ui-color-picker .ui-color-picker-view .ui-color-picker-panel .ui-color-picker-content .label{padding-bottom:2px} .ui-color-picker .ui-color-picker-view .ui-color-picker-panel .ui-color-picker-content .line .ui-color-picker-box{cursor:pointer;float:left;margin-right:5px;border:solid 1px #c0c0c0;width:15px;height:15px;border-radius:2px}.ui-color-picker .ui-color-picker-view .ui-color-picker-panel .ui-color-picker-content .line .ui-color-picker-box .ui-color-picker-check{color:black;font-size:1.2em;position:relative;left:1px} .libraryRow{background-color:#ebd9b2} .datasetHighlighted{background-color:#f9f9f9} @@ -1804,7 +1802,7 @@ div.form-row-input{width:90%;float:left} div.form-row-input label{font-weight:normal;display:inline} div.form-row-error-message{width:300px;float:left;color:red;font-weight:bold;padding:3px 0} -.form-row .help,.toolParamHelp,.ui-table-form-info{color:#666}.form-row .help a,.toolParamHelp a{color:#666} +.form-row .help,.toolParamHelp,.ui-table-form-element .ui-table-form-field .ui-table-form-info{color:#666}.form-row .help a,.toolParamHelp a{color:#666} .form-row.form-actions{background:whiteSmoke;border-top:solid #ddd 1px;padding-top:10px;padding-bottom:10px;margin-top:5px} select{padding:2px;font-size:12px;line-height:1.428571429} select,input,textarea{font:inherit} diff -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a -r 6d494d75321150a815e3fc71fbd171f854dc1615 static/style/src/less/ui.less --- a/static/style/src/less/ui.less +++ b/static/style/src/less/ui.less @@ -57,7 +57,10 @@ height: auto !important; ul { i { - font-size: 1.2em; margin-right: @ui-margin-horizontal; position: relative; top: 1px; + font-size: 1.2em; + margin-right: @ui-margin-horizontal; + position: relative; + top: 1px; } } .button { @@ -142,28 +145,28 @@ // table form elements .ui-table-form-element { - .ui-table-form-title-optional { + .ui-table-form-title { font-weight: bold; - text-decoration: underline; - cursor: pointer; + .ui-table-form-optional { + cursor: pointer; + .icon { + margin-right: 5px; + font-size: 1.2em; + } + } } .ui-table-form-field { margin-top: @ui-margin-vertical; + .ui-table-form-info { + &:extend(.toolParamHelp); + clear: both !important; + } } margin-top: @ui-margin-vertical; margin-bottom: @ui-margin-vertical; overflow: hidden; } -.ui-table-form-title-strong { - font-weight: bold; -} - -.ui-table-form-info { - &:extend(.toolParamHelp); - clear: both !important; -} - .ui-table-form-separator { font-weight: bold; font-size: 0.9em; @@ -453,7 +456,6 @@ border: solid 1px #000000; width: 12px; height: 12px; - margin-bottom: 10px; margin-right: 5px; } .ui-color-picker-label { @@ -465,6 +467,7 @@ overflow: auto; display: none; float: left; + margin-top: 10px; .ui-color-picker-panel { width: 210px; .ui-color-picker-content { Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: Fix another identity vs value test error in xml handling.
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/eabb41fa2c14/ Changeset: eabb41fa2c14 User: dannon Date: 2015-02-14 16:05:32+00:00 Summary: Fix another identity vs value test error in xml handling. Affected #: 1 file diff -r 5b5cb768173f4be8dac5e046a8336d3e594ca95e -r eabb41fa2c1489aba13cb0c74ffc42cbf6a0ae6a lib/galaxy/tools/actions/__init__.py --- a/lib/galaxy/tools/actions/__init__.py +++ b/lib/galaxy/tools/actions/__init__.py @@ -548,7 +548,7 @@ pass #process change_format tags - if output.change_format: + if output.change_format is not None: new_format_set = False for change_elem in output.change_format: for when_elem in change_elem.findall( 'when' ): Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: Fix bug in usage of _replace in masking code.
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5b5cb768173f/ Changeset: 5b5cb768173f User: dannon Date: 2015-02-14 15:52:59+00:00 Summary: Fix bug in usage of _replace in masking code. Affected #: 1 file diff -r d7f7cc2d706e8ed6e9bf43e8b94ad472243d8f41 -r 5b5cb768173f4be8dac5e046a8336d3e594ca95e lib/galaxy/util/__init__.py --- a/lib/galaxy/util/__init__.py +++ b/lib/galaxy/util/__init__.py @@ -519,7 +519,7 @@ # This can manipulate the input other than just masking password, # so the previous string replace method is preferred when the # password doesn't appear twice in the url - split._replace(netloc=split.netloc.replace("%s:%s" % (split.username, split.password), '%s:********' % split.username)) + split = split._replace(netloc=split.netloc.replace("%s:%s" % (split.username, split.password), '%s:********' % split.username)) url = urlparse.urlunsplit(split) return url Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: dannon: Note that Whoosh is also not installed at tip version in requirements.txt
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/d7f7cc2d706e/ Changeset: d7f7cc2d706e User: dannon Date: 2015-02-14 15:37:10+00:00 Summary: Note that Whoosh is also not installed at tip version in requirements.txt Affected #: 1 file diff -r b5e29b7e30995a1f67384ce50a490383ee16083c -r d7f7cc2d706e8ed6e9bf43e8b94ad472243d8f41 requirements.txt --- a/requirements.txt +++ b/requirements.txt @@ -14,14 +14,14 @@ # starting a Galaxy server. Use this in conjunction with the # `GALAXY_ENABLE_EGGS=False` environment variable. # -# Note that except in the case of SQLAlchemy, all dependencies will be -# installed at their newest versions. Galaxy has not been tested with these and -# you may (likely?) run into problems! The Galaxy Team does not support using -# Galaxy with dependency versions other than those in eggs.ini, however, if you -# do find an incompatibility between Galaxy and the latest version, we would -# appreciate if you would investigate and provide a code fix for the issue. We -# are trying to move away from our strict version dependency policy and this -# would greatly help in our efforts. +# Note that except in the case of SQLAlchemy and Whoosh, all dependencies will +# be installed at their newest versions. Galaxy has not been tested with these +# and you may (likely?) run into problems! The Galaxy Team does not support +# using Galaxy with dependency versions other than those in eggs.ini, however, +# if you do find an incompatibility between Galaxy and the latest version, we +# would appreciate if you would investigate and provide a code fix for the +# issue. We are trying to move away from our strict version dependency policy +# and this would greatly help in our efforts. Paste PasteDeploy Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: Ui: Add word wrap tag to citations
by commits-noreply＠bitbucket.org 14 Feb '15

14 Feb '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/b5e29b7e3099/ Changeset: b5e29b7e3099 User: guerler Date: 2015-02-14 04:13:02+00:00 Summary: Ui: Add word wrap tag to citations Affected #: 3 files diff -r 60fb187429eb0204eddbc5d6f7187236bd091c97 -r b5e29b7e30995a1f67384ce50a490383ee16083c client/galaxy/scripts/mvc/citation/citation-view.js --- a/client/galaxy/scripts/mvc/citation/citation-view.js +++ b/client/galaxy/scripts/mvc/citation/citation-view.js @@ -169,7 +169,7 @@ '</div>', '<div class="toolFormBody" style="padding:5px 10px">', this.partialWarningElement(), - '<span class="citations-formatted"></span>', + '<span class="citations-formatted" style="word-wrap: break-word;"></span>', '</div>', '<div class="citations-bibtex toolFormBody" style="padding:5px 10px">', '<textarea style="width: 100%; height: 500px;" class="citations-bibtex-text"></textarea>', diff -r 60fb187429eb0204eddbc5d6f7187236bd091c97 -r b5e29b7e30995a1f67384ce50a490383ee16083c static/scripts/mvc/citation/citation-view.js --- a/static/scripts/mvc/citation/citation-view.js +++ b/static/scripts/mvc/citation/citation-view.js @@ -169,7 +169,7 @@ '</div>', '<div class="toolFormBody" style="padding:5px 10px">', this.partialWarningElement(), - '<span class="citations-formatted"></span>', + '<span class="citations-formatted" style="word-wrap: break-word;"></span>', '</div>', '<div class="citations-bibtex toolFormBody" style="padding:5px 10px">', '<textarea style="width: 100%; height: 500px;" class="citations-bibtex-text"></textarea>', diff -r 60fb187429eb0204eddbc5d6f7187236bd091c97 -r b5e29b7e30995a1f67384ce50a490383ee16083c static/scripts/packed/mvc/citation/citation-view.js --- a/static/scripts/packed/mvc/citation/citation-view.js +++ b/static/scripts/packed/mvc/citation/citation-view.js @@ -1,1 +1,1 @@ -define(["mvc/base-mvc","mvc/citation/citation-model","utils/localization"],function(a,d,c){var b=Backbone.View.extend({tagName:"div",className:"citations",render:function(){this.$el.append("<p>"+this.formattedReference()+"</p>");return this},formattedReference:function(){var k=this.model;var i=k.entryType();var l=k.fields();var g="";var o=this._asSentence((l.author?l.author:"")+(l.year?(" ("+l.year+")"):""))+" ";var n=l.title||"";var h=l.pages?("pp. "+l.pages):"";var p=l.address;if(i=="article"){var j=(l.volume?l.volume:"")+(l.number?(" ("+l.number+")"):"")+(h?", "+h:"");g=o+this._asSentence(n)+(l.journal?("In <em>"+l.journal+", "):"")+this._asSentence(j)+this._asSentence(l.address)+"</em>"}else{if(i=="inproceedings"||i=="proceedings"){g=o+this._asSentence(n)+(l.booktitle?("In <em>"+l.booktitle+", "):"")+(h?h:"")+(p?", "+p:"")+".</em>"}else{if(i=="mastersthesis"||i=="phdthesis"){g=o+this._asSentence(n)+(l.howpublished?l.howpublished+". ":"")+(l.note?l.note+".":"")}else{if(i=="techreport"){g=o+this._asSentence(n)+this._asSentence(l.institution)+this._asSentence(l.number)+this._asSentence(l.type)}else{if(i=="book"||i=="inbook"||i=="incollection"){g=o+" "+this._formatBookInfo(l)}else{g=o+" "+this._asSentence(n)+this._asSentence(l.howpublished)+this._asSentence(l.note)}}}}}var m="";if(l.doi){m="http://dx.doi.org/"+l.doi;g+='[<a href="'+m+'" target="_blank">doi:'+l.doi+"</a>]"}var f=l.url||m;if(f){g+='[<a href="'+f+'" target="_blank">Link</a>]'}return g},_formatBookInfo:function(f){var g="";if(f.chapter){g+=f.chapter+" in "}if(f.title){g+="<em>"+f.title+"</em>"}if(f.editor){g+=", Edited by "+f.editor+", "}if(f.publisher){g+=", "+f.publisher}if(f.pages){g+=", pp. "+f.pages+""}if(f.series){g+=", <em>"+f.series+"</em>"}if(f.volume){g+=", Vol."+f.volume}if(f.issn){g+=", ISBN: "+f.issn}return g+"."},_asSentence:function(f){return(f&&f.trim())?f+". ":""}});var e=Backbone.View.extend({el:"#citations",initialize:function(){this.listenTo(this.collection,"add",this.renderCitation)},events:{"click .citations-to-bibtex":"showBibtex","click .citations-to-formatted":"showFormatted"},renderCitation:function(g){var f=new b({model:g});this.$(".citations-formatted").append(f.render().el);var h=this.$(".citations-bibtex-text");h.val(h.val()+"\n\r"+g.attributes.content)},render:function(){this.$el.html(this.citationsElement());this.collection.each(function(f){this.renderCitation(f)},this);this.showFormatted()},showBibtex:function(){this.$(".citations-to-formatted").show();this.$(".citations-to-bibtex").hide();this.$(".citations-bibtex").show();this.$(".citations-formatted").hide();this.$(".citations-bibtex-text").select()},showFormatted:function(){this.$(".citations-to-formatted").hide();this.$(".citations-to-bibtex").show();this.$(".citations-bibtex").hide();this.$(".citations-formatted").show()},partialWarningElement:function(){if(this.collection.partial){return['<div style="padding:5px 10px">',"<b>Warning: This is a experimental feature.</b> Most Galaxy tools will not annotate"," citations explicitly at this time. When writing up your analysis, please manually"," review your histories and find all references"," that should be cited in order to completely describe your work. Also, please remember to",' <a href="https://wiki.galaxyproject.org/CitingGalaxy">cite Galaxy</a>.',"</div>",].join("")}else{return""}},citationsElement:function(){return['<div class="toolForm">','<div class="toolFormTitle">',c("Citations"),' <i class="fa fa-pencil-square-o citations-to-bibtex" title="Select all as BibTeX."></i>',' <i class="fa fa-times citations-to-formatted" title="Return to formatted citation list."></i>',"</div>",'<div class="toolFormBody" style="padding:5px 10px">',this.partialWarningElement(),'<span class="citations-formatted"></span>',"</div>",'<div class="citations-bibtex toolFormBody" style="padding:5px 10px">','<textarea style="width: 100%; height: 500px;" class="citations-bibtex-text"></textarea>',"</div>","</div>"].join("")}});return{CitationView:b,CitationListView:e}}); \ No newline at end of file +define(["mvc/base-mvc","mvc/citation/citation-model","utils/localization"],function(a,d,c){var b=Backbone.View.extend({tagName:"div",className:"citations",render:function(){this.$el.append("<p>"+this.formattedReference()+"</p>");return this},formattedReference:function(){var k=this.model;var i=k.entryType();var l=k.fields();var g="";var o=this._asSentence((l.author?l.author:"")+(l.year?(" ("+l.year+")"):""))+" ";var n=l.title||"";var h=l.pages?("pp. "+l.pages):"";var p=l.address;if(i=="article"){var j=(l.volume?l.volume:"")+(l.number?(" ("+l.number+")"):"")+(h?", "+h:"");g=o+this._asSentence(n)+(l.journal?("In <em>"+l.journal+", "):"")+this._asSentence(j)+this._asSentence(l.address)+"</em>"}else{if(i=="inproceedings"||i=="proceedings"){g=o+this._asSentence(n)+(l.booktitle?("In <em>"+l.booktitle+", "):"")+(h?h:"")+(p?", "+p:"")+".</em>"}else{if(i=="mastersthesis"||i=="phdthesis"){g=o+this._asSentence(n)+(l.howpublished?l.howpublished+". ":"")+(l.note?l.note+".":"")}else{if(i=="techreport"){g=o+this._asSentence(n)+this._asSentence(l.institution)+this._asSentence(l.number)+this._asSentence(l.type)}else{if(i=="book"||i=="inbook"||i=="incollection"){g=o+" "+this._formatBookInfo(l)}else{g=o+" "+this._asSentence(n)+this._asSentence(l.howpublished)+this._asSentence(l.note)}}}}}var m="";if(l.doi){m="http://dx.doi.org/"+l.doi;g+='[<a href="'+m+'" target="_blank">doi:'+l.doi+"</a>]"}var f=l.url||m;if(f){g+='[<a href="'+f+'" target="_blank">Link</a>]'}return g},_formatBookInfo:function(f){var g="";if(f.chapter){g+=f.chapter+" in "}if(f.title){g+="<em>"+f.title+"</em>"}if(f.editor){g+=", Edited by "+f.editor+", "}if(f.publisher){g+=", "+f.publisher}if(f.pages){g+=", pp. "+f.pages+""}if(f.series){g+=", <em>"+f.series+"</em>"}if(f.volume){g+=", Vol."+f.volume}if(f.issn){g+=", ISBN: "+f.issn}return g+"."},_asSentence:function(f){return(f&&f.trim())?f+". ":""}});var e=Backbone.View.extend({el:"#citations",initialize:function(){this.listenTo(this.collection,"add",this.renderCitation)},events:{"click .citations-to-bibtex":"showBibtex","click .citations-to-formatted":"showFormatted"},renderCitation:function(g){var f=new b({model:g});this.$(".citations-formatted").append(f.render().el);var h=this.$(".citations-bibtex-text");h.val(h.val()+"\n\r"+g.attributes.content)},render:function(){this.$el.html(this.citationsElement());this.collection.each(function(f){this.renderCitation(f)},this);this.showFormatted()},showBibtex:function(){this.$(".citations-to-formatted").show();this.$(".citations-to-bibtex").hide();this.$(".citations-bibtex").show();this.$(".citations-formatted").hide();this.$(".citations-bibtex-text").select()},showFormatted:function(){this.$(".citations-to-formatted").hide();this.$(".citations-to-bibtex").show();this.$(".citations-bibtex").hide();this.$(".citations-formatted").show()},partialWarningElement:function(){if(this.collection.partial){return['<div style="padding:5px 10px">',"<b>Warning: This is a experimental feature.</b> Most Galaxy tools will not annotate"," citations explicitly at this time. When writing up your analysis, please manually"," review your histories and find all references"," that should be cited in order to completely describe your work. Also, please remember to",' <a href="https://wiki.galaxyproject.org/CitingGalaxy">cite Galaxy</a>.',"</div>",].join("")}else{return""}},citationsElement:function(){return['<div class="toolForm">','<div class="toolFormTitle">',c("Citations"),' <i class="fa fa-pencil-square-o citations-to-bibtex" title="Select all as BibTeX."></i>',' <i class="fa fa-times citations-to-formatted" title="Return to formatted citation list."></i>',"</div>",'<div class="toolFormBody" style="padding:5px 10px">',this.partialWarningElement(),'<span class="citations-formatted" style="word-wrap: break-word;"></span>',"</div>",'<div class="citations-bibtex toolFormBody" style="padding:5px 10px">','<textarea style="width: 100%; height: 500px;" class="citations-bibtex-text"></textarea>',"</div>","</div>"].join("")}});return{CitationView:b,CitationListView:e}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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galaxy-commits February 2015