April 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 8a9c35: Reenable rodeo
by GitHub 17 Apr '15

17 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 8a9c357a3d20693a621962b5ad9b36722842474e https://github.com/galaxyproject/usegalaxy-playbook/commit/8a9c357a3d20693a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-17 (Fri, 17 Apr 2015) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Reenable rodeo

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[galaxyproject/ansible-galaxy] b88864: Add a flag to force vcs checkout (defaulting to no...
by GitHub 16 Apr '15

16 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: b8886463194ed66c22c2a810956b84b2ed551638 https://github.com/galaxyproject/ansible-galaxy/commit/b8886463194ed66c22c2… Author: Enis Afgan <afgane(a)gmail.com> Date: 2015-04-16 (Thu, 16 Apr 2015) Changed paths: M README.md M defaults/main.yml M tasks/clone.yml Log Message: ----------- Add a flag to force vcs checkout (defaulting to no)

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[galaxyproject/usegalaxy-playbook] 6207ba: Update Tool Shed, enable archive types for hgweb.
by GitHub 15 Apr '15

15 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 6207ba61dbbe88d0b7b3156c54a5b4f1c6cb642a https://github.com/galaxyproject/usegalaxy-playbook/commit/6207ba61dbbe88d0… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-15 (Wed, 15 Apr 2015) Changed paths: M stage/group_vars/toolshedservers.yml M toolshed.yml Log Message: ----------- Update Tool Shed, enable archive types for hgweb.

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[galaxyproject/usegalaxy-playbook] d5b45a: Grant Nitesh access to the databases.
by GitHub 14 Apr '15

14 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d5b45a068f3b11276da25711db2dce8df8d91c48 https://github.com/galaxyproject/usegalaxy-playbook/commit/d5b45a068f3b1127… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-14 (Tue, 14 Apr 2015) Changed paths: M production/group_vars/galaxydbservers.yml M production/secret_vars/galaxydbservers.yml M stage/group_vars/galaxydbservers.yml M stage/secret_vars/galaxydbservers.yml Log Message: ----------- Grant Nitesh access to the databases.

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[galaxyproject/usegalaxy-playbook] 9a761a: Manage PostgreSQL objects for Galaxy.
by GitHub 13 Apr '15

13 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 9a761a7967f1475299a606f3f8fa6401063d422d https://github.com/galaxyproject/usegalaxy-playbook/commit/9a761a7967f14752… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-13 (Mon, 13 Apr 2015) Changed paths: M galaxy_infrastructure.yml A production/group_vars/galaxydbservers.yml M production/inventory A production/secret_vars/galaxydbservers.yml A stage/group_vars/galaxydbservers.yml M stage/inventory A stage/secret_vars/galaxydbservers.yml Log Message: ----------- Manage PostgreSQL objects for Galaxy.

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[galaxyproject/usegalaxy-playbook] 5b9231: Update Main
by GitHub 13 Apr '15

13 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5b9231569256d0e785021085180f0a5d331c80c6 https://github.com/galaxyproject/usegalaxy-playbook/commit/5b9231569256d0e7… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-13 (Mon, 13 Apr 2015) Changed paths: M production/group_vars/all.yml Log Message: ----------- Update Main

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[galaxyproject/usegalaxy-playbook] c5f10d: Update Test, enable job_file staging via nginx_upl...
by GitHub 10 Apr '15

10 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: c5f10dded475f0cf9f98fa2008a29ac19ce9f4e7 https://github.com/galaxyproject/usegalaxy-playbook/commit/c5f10dded475f0cf… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-10 (Fri, 10 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M stage/group_vars/all.yml M stage/group_vars/galaxyservers.yml Log Message: ----------- Update Test, enable job_file staging via nginx_upload_module.

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[galaxyproject/usegalaxy-playbook] 9843e6: Update Main
by GitHub 09 Apr '15

09 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 9843e67a0068c90097d6636020a40ea8afa48f49 https://github.com/galaxyproject/usegalaxy-playbook/commit/9843e67a0068c900… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-09 (Thu, 09 Apr 2015) Changed paths: M production/group_vars/all.yml M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Update Main Also fix job config broken when I fixed "reserved partition" submission.

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[galaxyproject/usegalaxy-playbook] e6b2f4: Update Test, fetch mutable
by GitHub 09 Apr '15

09 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e6b2f41598852265fe250616d32eb98fb44db984 https://github.com/galaxyproject/usegalaxy-playbook/commit/e6b2f41598852265… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-09 (Thu, 09 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M stage/group_vars/all.yml Log Message: ----------- Update Test, fetch mutable Commit: c8fa515e5c345556f90b119b1ddc5d7ea7be7bc1 https://github.com/galaxyproject/usegalaxy-playbook/commit/c8fa515e5c345556… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-09 (Thu, 09 Apr 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/datatypes_conf.xml.j2 Log Message: ----------- Fix warning about missing gbrowse build sites file on Pulsar Commit: b0b9a6dc87e7bf77b36cd23b5b714028e6e73098 https://github.com/galaxyproject/usegalaxy-playbook/commit/b0b9a6dc87e7bf77… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-09 (Thu, 09 Apr 2015) Changed paths: M files/galaxy/test.galaxyproject.org/dynamic_rules/multi_dynamic_walltime.py M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Run more tools from Test on Stampede Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/6baff5504500...…

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[galaxyproject/usegalaxy-playbook] e7a8f9: Manage the galaxy_root directory subdirectories, s...
by GitHub 08 Apr '15

08 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e7a8f9aacd1ecb5fec6cc33a0cfd245a3e8f3921 https://github.com/galaxyproject/usegalaxy-playbook/commit/e7a8f9aacd1ecb5f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/usegalaxy_admin/tasks/main.yml M roles/usegalaxy_privileged/tasks/main.yml A roles/usegalaxy_privileged/templates/archive_logs.sh.j2 Log Message: ----------- Manage the galaxy_root directory subdirectories, set up Galaxy log archival. Commit: 6baff550450098f93bd7eec1180331ce17797878 https://github.com/galaxyproject/usegalaxy-playbook/commit/6baff550450098f9… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: M galaxy.yml M galaxy_configs.yml M galaxy_infrastructure.yml M galaxy_static.yml M production/group_vars/galaxyservers.yml M stage/group_vars/galaxyservers.yml M templates/supervisor/galaxy.conf.j2 M templates/supervisor/galaxy_impersonate.conf.j2 M templates/supervisor/galaxy_installer.conf.j2 M templates/supervisor/galaxy_reports.conf.j2 Log Message: ----------- Fix log rotation for Galaxy, also don't hardcode gxsrc. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/58872680c28b...…

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