August 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 1c0dac: Recursively look for package elements within tool_...
by GitHub 26 Aug '15

26 Aug '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/galaxy Commit: 1c0daceb8fa2f9c1b4a458817aaab0c3ab3926f3 https://github.com/galaxyproject/galaxy/commit/1c0daceb8fa2f9c1b4a458817aaa… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-07-29 (Wed, 29 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Recursively look for package elements within tool_dependencies.xml, otherwise packages needed for install, but specified within install/actions/actions groups with not be installed. Commit: 86a39cb20c79ce42fe208e5d748a536c4fa4dbbd https://github.com/galaxyproject/galaxy/commit/86a39cb20c79ce42fe208e5d748a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-07-29 (Wed, 29 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Cleanup in metadata_generator.py Commit: 6eb9c155857d3c85d847ce33b1e962f5fc092330 https://github.com/galaxyproject/galaxy/commit/6eb9c155857d3c85d847ce33b1e9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-07-29 (Wed, 29 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Composition of error messages in toolshed metadata stuff. Commit: dde800b54f30fe875039507949f7ab5737b241d9 https://github.com/galaxyproject/galaxy/commit/dde800b54f30fe875039507949f7… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-07-30 (Thu, 30 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Merge pull request #2 from dannon/recurse-toolshed-changeset Collect error messages (which fixes the current travis build), some other cleanup for sanity. Commit: 30bb209e8db52455992320f3e02c62c28afb7770 https://github.com/galaxyproject/galaxy/commit/30bb209e8db52455992320f3e02c… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-08-24 (Mon, 24 Aug 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- During installation, make invalid repository dependency definitions non-fatal errors. Commit: dc6700eec50f679f5d344eeaf8c0641f8869c6c4 https://github.com/galaxyproject/galaxy/commit/dc6700eec50f679f5d344eeaf8c0… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/util/xml_macros.py M test/unit/tools/test_tool_loader.py Log Message: ----------- Fix yield statements at the top level of macros. Fixes #647. Commit: a3a209b8a001b8a841ea9a03ca206346bbcab439 https://github.com/galaxyproject/galaxy/commit/a3a209b8a001b8a841ea9a03ca20… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Merge pull request #528 from blankenberg/recurse-toolshed-changeset [15.07] Recursively look for package elements within tool_dependencies.xml when setting metadata, Commit: 71125326f842860b163b889b514cf10036915ca7 https://github.com/galaxyproject/galaxy/commit/71125326f842860b163b889b514c… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/util/xml_macros.py M test/unit/tools/test_tool_loader.py Log Message: ----------- Merge pull request #649 from jmchilton/yield_at_top_level [15.07] Fix yield statements at the top level of macros. Commit: 224c20d4b2cf0d24605f0956fe2c742bef1d6ae7 https://github.com/galaxyproject/galaxy/commit/224c20d4b2cf0d24605f0956fe2c… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-08-26 (Wed, 26 Aug 2015) Changed paths: M lib/galaxy/util/xml_macros.py M lib/tool_shed/metadata/metadata_generator.py M test/unit/tools/test_tool_loader.py Log Message: ----------- Merge branch 'release_15.07' Compare: https://github.com/galaxyproject/galaxy/compare/115efe734ae7...224c20d4b2cf

1 0

[galaxyproject/galaxy] bc3ecb: flake8 test/tool_shed/ .
by GitHub 26 Aug '15

26 Aug '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bc3ecbbae8d0161dec98d0566ad8c9eb3dfcfd97 https://github.com/galaxyproject/galaxy/commit/bc3ecbbae8d0161dec98d0566ad8… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-26 (Wed, 26 Aug 2015) Changed paths: M .ci/flake8_blacklist.txt M test/tool_shed/base/twilltestcase.py M test/tool_shed/functional/test_0000_basic_repository_features.py M test/tool_shed/functional/test_0010_repository_with_tool_dependencies.py M test/tool_shed/functional/test_0020_basic_repository_dependencies.py M test/tool_shed/functional/test_0030_repository_dependency_revisions.py M test/tool_shed/functional/test_0040_repository_circular_dependencies.py M test/tool_shed/functional/test_0050_circular_dependencies_4_levels.py M test/tool_shed/functional/test_0060_workflows.py M test/tool_shed/functional/test_0070_invalid_tool.py M test/tool_shed/functional/test_0080_advanced_circular_dependencies.py M test/tool_shed/functional/test_0090_tool_search.py M test/tool_shed/functional/test_0100_complex_repository_dependencies.py M test/tool_shed/functional/test_0110_invalid_simple_repository_dependencies.py M test/tool_shed/functional/test_0120_simple_repository_dependency_multiple_owners.py M test/tool_shed/functional/test_0130_datatype_converters.py M test/tool_shed/functional/test_0140_tool_help_images.py M test/tool_shed/functional/test_0150_prior_installation_required.py M test/tool_shed/functional/test_0160_circular_prior_installation_required.py M test/tool_shed/functional/test_0170_complex_prior_installation_required.py M test/tool_shed/functional/test_0300_reset_all_metadata.py M test/tool_shed/functional/test_0310_hg_push_from_api.py M test/tool_shed/functional/test_0400_repository_component_reviews.py M test/tool_shed/functional/test_0410_repository_component_review_access_control.py M test/tool_shed/functional/test_0420_citable_urls_for_repositories.py M test/tool_shed/functional/test_0430_browse_utilities.py M test/tool_shed/functional/test_0440_deleting_dependency_definitions.py M test/tool_shed/functional/test_0450_skip_tool_tests.py M test/tool_shed/functional/test_0460_upload_to_repository.py M test/tool_shed/functional/test_0470_tool_dependency_repository_type.py M test/tool_shed/functional/test_0480_tool_dependency_xml_verification.py M test/tool_shed/functional/test_0490_export_import_repositories.py M test/tool_shed/functional/test_0500_export_repository_simple_dependency.py M test/tool_shed/functional/test_0510_export_import_repository_complex_dependencies.py M test/tool_shed/functional/test_0520_import_export_circular_dependencies.py M test/tool_shed/functional/test_0530_repository_admin_feature.py M test/tool_shed/functional/test_1000_install_basic_repository.py M test/tool_shed/functional/test_1010_install_repository_with_tool_dependencies.py M test/tool_shed/functional/test_1020_install_repository_with_repository_dependencies.py M test/tool_shed/functional/test_1030_install_repository_with_dependency_revisions.py M test/tool_shed/functional/test_1040_install_repository_basic_circular_dependencies.py M test/tool_shed/functional/test_1050_circular_dependencies_4_levels.py M test/tool_shed/functional/test_1060_install_repository_with_workflow.py M test/tool_shed/functional/test_1070_invalid_tool.py M test/tool_shed/functional/test_1080_advanced_circular_dependency_installation.py M test/tool_shed/functional/test_1085_repository_dependency_handling.py M test/tool_shed/functional/test_1087_install_updated_repository_dependencies.py M test/tool_shed/functional/test_1090_install_tool_from_tool_search.py M test/tool_shed/functional/test_1100_install_repository_with_complex_dependencies.py M test/tool_shed/functional/test_1110_install_repository_with_invalid_repository_dependency.py M test/tool_shed/functional/test_1120_simple_repository_dependency_multiple_owners.py M test/tool_shed/functional/test_1130_datatype_converters.py M test/tool_shed/functional/test_1140_tool_help_images.py M test/tool_shed/functional/test_1150_prior_installation_required.py M test/tool_shed/functional/test_1160_circular_prior_installation_required.py M test/tool_shed/functional/test_1170_complex_prior_installation_required.py M test/tool_shed/functional/test_1200_uninstall_and_reinstall_basic_repository.py M test/tool_shed/functional/test_1210_uninstall_reinstall_repository_with_tool_dependencies.py M test/tool_shed/functional/test_1220_uninstall_reinstall_repository_with_repository_dependencies.py M test/tool_shed/functional/test_1230_uninstall_reinstall_repository_with_dependency_revisions.py M test/tool_shed/functional/test_1300_reset_all_metadata.py M test/tool_shed/functional/test_1400_review_migration_stages.py M test/tool_shed/functional/test_1410_update_manager.py M test/tool_shed/functional/test_1420_tool_dependency_environment_inheritance.py M test/tool_shed/functional/test_1430_repair_installed_repository.py M test/tool_shed/functional/test_1440_missing_env_sh_files.py M test/tool_shed/functional/test_1450_installing_datatypes_sniffers.py M test/tool_shed/functional/test_1460_data_managers.py M test/tool_shed/functional/test_1470_updating_installed_repositories.py M test/tool_shed/functional_tests.py Log Message: ----------- flake8 test/tool_shed/ . Commit: 5701934e6520713913dced403992551eae7c6ef8 https://github.com/galaxyproject/galaxy/commit/5701934e6520713913dced403992… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-26 (Wed, 26 Aug 2015) Changed paths: M test/tool_shed/functional/test_1170_complex_prior_installation_required.py Log Message: ----------- Fix broken test_0025_install_matplotlib_repository test. Commit: 11870a96f4e73838941e29c9ae2c0f721c8c072d https://github.com/galaxyproject/galaxy/commit/11870a96f4e73838941e29c9ae2c… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-26 (Wed, 26 Aug 2015) Changed paths: M test/tool_shed/test_data/proteomics_datatypes/proteomics_datatypes.tar Log Message: ----------- Remove from proteomics_datatypes.tar test data the datatypes that have been added to Galaxy datatypes. Fix tests in test/tool_shed/functional/test_1450_installing_datatypes_sniffers.py . Commit: 6ca86b5586dea7ae88249cf66183bb44a1c9e96a https://github.com/galaxyproject/galaxy/commit/6ca86b5586dea7ae88249cf66183… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-26 (Wed, 26 Aug 2015) Changed paths: M lib/galaxy/webapps/tool_shed/controllers/repository.py Log Message: ----------- Fix regression introduced in 0f2e2152ee17532488a8231cf1220ed9ddddb3aa . Commit: fc2861ce78204f52ec917ea73695d2b090f7b945 https://github.com/galaxyproject/galaxy/commit/fc2861ce78204f52ec917ea73695… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-26 (Wed, 26 Aug 2015) Changed paths: M test/tool_shed/base/twilltestcase.py Log Message: ----------- Fix 3 failing functional tests in test/tool_shed/ . Commit: b0f2eaec031217b8ed3c018bded274f6fbc3b155 https://github.com/galaxyproject/galaxy/commit/b0f2eaec031217b8ed3c018bded2… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-08-26 (Wed, 26 Aug 2015) Changed paths: M .ci/flake8_blacklist.txt M lib/galaxy/webapps/tool_shed/controllers/repository.py M test/tool_shed/base/twilltestcase.py M test/tool_shed/functional/test_0000_basic_repository_features.py M test/tool_shed/functional/test_0010_repository_with_tool_dependencies.py M test/tool_shed/functional/test_0020_basic_repository_dependencies.py M test/tool_shed/functional/test_0030_repository_dependency_revisions.py M test/tool_shed/functional/test_0040_repository_circular_dependencies.py M test/tool_shed/functional/test_0050_circular_dependencies_4_levels.py M test/tool_shed/functional/test_0060_workflows.py M test/tool_shed/functional/test_0070_invalid_tool.py M test/tool_shed/functional/test_0080_advanced_circular_dependencies.py M test/tool_shed/functional/test_0090_tool_search.py M test/tool_shed/functional/test_0100_complex_repository_dependencies.py M test/tool_shed/functional/test_0110_invalid_simple_repository_dependencies.py M test/tool_shed/functional/test_0120_simple_repository_dependency_multiple_owners.py M test/tool_shed/functional/test_0130_datatype_converters.py M test/tool_shed/functional/test_0140_tool_help_images.py M test/tool_shed/functional/test_0150_prior_installation_required.py M test/tool_shed/functional/test_0160_circular_prior_installation_required.py M test/tool_shed/functional/test_0170_complex_prior_installation_required.py M test/tool_shed/functional/test_0300_reset_all_metadata.py M test/tool_shed/functional/test_0310_hg_push_from_api.py M test/tool_shed/functional/test_0400_repository_component_reviews.py M test/tool_shed/functional/test_0410_repository_component_review_access_control.py M test/tool_shed/functional/test_0420_citable_urls_for_repositories.py M test/tool_shed/functional/test_0430_browse_utilities.py M test/tool_shed/functional/test_0440_deleting_dependency_definitions.py M test/tool_shed/functional/test_0450_skip_tool_tests.py M test/tool_shed/functional/test_0460_upload_to_repository.py M test/tool_shed/functional/test_0470_tool_dependency_repository_type.py M test/tool_shed/functional/test_0480_tool_dependency_xml_verification.py M test/tool_shed/functional/test_0490_export_import_repositories.py M test/tool_shed/functional/test_0500_export_repository_simple_dependency.py M test/tool_shed/functional/test_0510_export_import_repository_complex_dependencies.py M test/tool_shed/functional/test_0520_import_export_circular_dependencies.py M test/tool_shed/functional/test_0530_repository_admin_feature.py M test/tool_shed/functional/test_1000_install_basic_repository.py M test/tool_shed/functional/test_1010_install_repository_with_tool_dependencies.py M test/tool_shed/functional/test_1020_install_repository_with_repository_dependencies.py M test/tool_shed/functional/test_1030_install_repository_with_dependency_revisions.py M test/tool_shed/functional/test_1040_install_repository_basic_circular_dependencies.py M test/tool_shed/functional/test_1050_circular_dependencies_4_levels.py M test/tool_shed/functional/test_1060_install_repository_with_workflow.py M test/tool_shed/functional/test_1070_invalid_tool.py M test/tool_shed/functional/test_1080_advanced_circular_dependency_installation.py M test/tool_shed/functional/test_1085_repository_dependency_handling.py M test/tool_shed/functional/test_1087_install_updated_repository_dependencies.py M test/tool_shed/functional/test_1090_install_tool_from_tool_search.py M test/tool_shed/functional/test_1100_install_repository_with_complex_dependencies.py M test/tool_shed/functional/test_1110_install_repository_with_invalid_repository_dependency.py M test/tool_shed/functional/test_1120_simple_repository_dependency_multiple_owners.py M test/tool_shed/functional/test_1130_datatype_converters.py M test/tool_shed/functional/test_1140_tool_help_images.py M test/tool_shed/functional/test_1150_prior_installation_required.py M test/tool_shed/functional/test_1160_circular_prior_installation_required.py M test/tool_shed/functional/test_1170_complex_prior_installation_required.py M test/tool_shed/functional/test_1200_uninstall_and_reinstall_basic_repository.py M test/tool_shed/functional/test_1210_uninstall_reinstall_repository_with_tool_dependencies.py M test/tool_shed/functional/test_1220_uninstall_reinstall_repository_with_repository_dependencies.py M test/tool_shed/functional/test_1230_uninstall_reinstall_repository_with_dependency_revisions.py M test/tool_shed/functional/test_1300_reset_all_metadata.py M test/tool_shed/functional/test_1400_review_migration_stages.py M test/tool_shed/functional/test_1410_update_manager.py M test/tool_shed/functional/test_1420_tool_dependency_environment_inheritance.py M test/tool_shed/functional/test_1430_repair_installed_repository.py M test/tool_shed/functional/test_1440_missing_env_sh_files.py M test/tool_shed/functional/test_1450_installing_datatypes_sniffers.py M test/tool_shed/functional/test_1460_data_managers.py M test/tool_shed/functional/test_1470_updating_installed_repositories.py M test/tool_shed/functional_tests.py M test/tool_shed/test_data/proteomics_datatypes/proteomics_datatypes.tar Log Message: ----------- Merge pull request #650 from nsoranzo/dev flake8 test/tool_shed/ . Fix 8 Tool Shed functional tests. Compare: https://github.com/galaxyproject/galaxy/compare/4dc2f8ceeda6...b0f2eaec0312

1 0

[galaxyproject/galaxy] dc6700: Fix yield statements at the top level of macros.
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/release_15.07 Home: https://github.com/galaxyproject/galaxy Commit: dc6700eec50f679f5d344eeaf8c0641f8869c6c4 https://github.com/galaxyproject/galaxy/commit/dc6700eec50f679f5d344eeaf8c0… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/util/xml_macros.py M test/unit/tools/test_tool_loader.py Log Message: ----------- Fix yield statements at the top level of macros. Fixes #647. Commit: 71125326f842860b163b889b514cf10036915ca7 https://github.com/galaxyproject/galaxy/commit/71125326f842860b163b889b514c… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/util/xml_macros.py M test/unit/tools/test_tool_loader.py Log Message: ----------- Merge pull request #649 from jmchilton/yield_at_top_level [15.07] Fix yield statements at the top level of macros. Compare: https://github.com/galaxyproject/galaxy/compare/a3a209b8a001...71125326f842

1 0

[galaxyproject/galaxy] f9f763: add missing js build
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f9f763f430081b3f1cb1569ff3239b61e8d01f97 https://github.com/galaxyproject/galaxy/commit/f9f763f430081b3f1cb1569ff323… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M static/maps/utils/uploadbox.js.map M static/scripts/utils/uploadbox.js Log Message: ----------- add missing js build Commit: 4dc2f8ceeda68e03d3b50ee9e6f5e3ab0f21b7f0 https://github.com/galaxyproject/galaxy/commit/4dc2f8ceeda68e03d3b50ee9e6f5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M static/maps/utils/uploadbox.js.map M static/scripts/utils/uploadbox.js Log Message: ----------- Merge pull request #648 from martenson/missing-js-build add missing js build Compare: https://github.com/galaxyproject/galaxy/compare/69ea94747883...4dc2f8ceeda6

1 0

[galaxyproject/galaxy] 1c0dac: Recursively look for package elements within tool_...
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/release_15.07 Home: https://github.com/galaxyproject/galaxy Commit: 1c0daceb8fa2f9c1b4a458817aaab0c3ab3926f3 https://github.com/galaxyproject/galaxy/commit/1c0daceb8fa2f9c1b4a458817aaa… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-07-29 (Wed, 29 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Recursively look for package elements within tool_dependencies.xml, otherwise packages needed for install, but specified within install/actions/actions groups with not be installed. Commit: 86a39cb20c79ce42fe208e5d748a536c4fa4dbbd https://github.com/galaxyproject/galaxy/commit/86a39cb20c79ce42fe208e5d748a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-07-29 (Wed, 29 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Cleanup in metadata_generator.py Commit: 6eb9c155857d3c85d847ce33b1e962f5fc092330 https://github.com/galaxyproject/galaxy/commit/6eb9c155857d3c85d847ce33b1e9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-07-29 (Wed, 29 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Composition of error messages in toolshed metadata stuff. Commit: dde800b54f30fe875039507949f7ab5737b241d9 https://github.com/galaxyproject/galaxy/commit/dde800b54f30fe875039507949f7… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-07-30 (Thu, 30 Jul 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Merge pull request #2 from dannon/recurse-toolshed-changeset Collect error messages (which fixes the current travis build), some other cleanup for sanity. Commit: 30bb209e8db52455992320f3e02c62c28afb7770 https://github.com/galaxyproject/galaxy/commit/30bb209e8db52455992320f3e02c… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-08-24 (Mon, 24 Aug 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- During installation, make invalid repository dependency definitions non-fatal errors. Commit: a3a209b8a001b8a841ea9a03ca206346bbcab439 https://github.com/galaxyproject/galaxy/commit/a3a209b8a001b8a841ea9a03ca20… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/tool_shed/metadata/metadata_generator.py Log Message: ----------- Merge pull request #528 from blankenberg/recurse-toolshed-changeset [15.07] Recursively look for package elements within tool_dependencies.xml when setting metadata, Compare: https://github.com/galaxyproject/galaxy/compare/2a7896782d6d...a3a209b8a001

1 0

[galaxyproject/usegalaxy-playbook] f77d0a: Remove suite_* tool names because they'll get inst...
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f77d0af15763eb910614a039d54c1e69e8b8977f https://github.com/galaxyproject/usegalaxy-playbook/commit/f77d0af15763eb91… Author: Enis Afgan <afgane(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M files/galaxy/test.galaxyproject.org/tool_list.yaml Log Message: ----------- Remove suite_* tool names because they'll get installed implicitly.

1 0

[galaxyproject/usegalaxy-playbook] 44fdab: Manually added section IDs for tools listed in htt...
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 44fdabb03e6319e0f4b913e9ee93846c6a8dddde https://github.com/galaxyproject/usegalaxy-playbook/commit/44fdabb03e6319e0… Author: Enis Afgan <afgane(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M files/galaxy/test.galaxyproject.org/tool_list.yaml Log Message: ----------- Manually added section IDs for tools listed in https://github.com/galaxyproject/usegalaxy-playbook/blob/master/files/galax…

1 0

[galaxyproject/usegalaxy-playbook] 4364e6: Update Test tool list to remove package repos, as ...
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 4364e643cc03a2f0bea5af8dc5c32d76a9606474 https://github.com/galaxyproject/usegalaxy-playbook/commit/4364e643cc03a2f0… Author: Enis Afgan <afgane(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M files/galaxy/test.galaxyproject.org/tool_list.yaml Log Message: ----------- Update Test tool list to remove package repos, as per https://github.com/galaxyproject/usegalaxy-playbook/pull/9

1 0

[galaxyproject/galaxy] fc82f7: Fix objectstore inheritance, pop some basic config...
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: fc82f779521a1b7afcb2495d6748f78e8ee36a1a https://github.com/galaxyproject/galaxy/commit/fc82f779521a1b7afcb2495d6748… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-08-24 (Mon, 24 Aug 2015) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Fix objectstore inheritance, pop some basic configuration up to the main ObjectStore class. Commit: 2a7896782d6d4b6407f64bca447087883952119b https://github.com/galaxyproject/galaxy/commit/2a7896782d6d4b6407f64bca4470… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Merge pull request #639 from dannon/objectstore_fix_inheritance [release_15.07] Fix objectstore inheritance, pop some basic configuration up to the m… Commit: 115efe734ae73b0e0d8c8faf8c0423396fee4728 https://github.com/galaxyproject/galaxy/commit/115efe734ae73b0e0d8c8faf8c04… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Merge branch 'release_15.07' Commit: 69ea94747883f7bf2ad0ddfae84914703f6d6297 https://github.com/galaxyproject/galaxy/commit/69ea94747883f7bf2ad0ddfae849… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Merge branch 'master' into dev Compare: https://github.com/galaxyproject/galaxy/compare/2ae60fbd84d8...69ea94747883

1 0

[galaxyproject/galaxy] fc82f7: Fix objectstore inheritance, pop some basic config...
by GitHub 25 Aug '15

25 Aug '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/galaxy Commit: fc82f779521a1b7afcb2495d6748f78e8ee36a1a https://github.com/galaxyproject/galaxy/commit/fc82f779521a1b7afcb2495d6748… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-08-24 (Mon, 24 Aug 2015) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Fix objectstore inheritance, pop some basic configuration up to the main ObjectStore class. Commit: 2a7896782d6d4b6407f64bca447087883952119b https://github.com/galaxyproject/galaxy/commit/2a7896782d6d4b6407f64bca4470… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Merge pull request #639 from dannon/objectstore_fix_inheritance [release_15.07] Fix objectstore inheritance, pop some basic configuration up to the m… Commit: 115efe734ae73b0e0d8c8faf8c0423396fee4728 https://github.com/galaxyproject/galaxy/commit/115efe734ae73b0e0d8c8faf8c04… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Merge branch 'release_15.07' Compare: https://github.com/galaxyproject/galaxy/compare/e36d5e4cdfba...115efe734ae7

1 0