Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 2b02677e85e57792a2aab52333ccc3f24c65393e
https://github.com/galaxyproject/galaxy/commit/2b02677e85e57792a2aab52333cc…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-09-19 (Sat, 19 Sep 2015)
Changed paths:
A test-data/3.bam
M test/functional/tools/metadata_bam.xml
Log Message:
-----------
Workaround for metadata_bam.xml failure.
Commit: c6be0bc12c6300f839d4b9dace05f567c493637d
https://github.com/galaxyproject/galaxy/commit/c6be0bc12c6300f839d4b9dace05…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-09-19 (Sat, 19 Sep 2015)
Changed paths:
R test/functional/tools/compare_bam_as_sam.xml
Log Message:
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Remove compare_bam_as_sam.xml test.
It never passed, it was originally used by me to test failing tests compared output of bams as sam files. Now that we want all these tests to pass we need to rethink how to test that aspect of the testing framework.
Commit: c7d7736472d06b4b8df169f6017f7a4afe97d7b3
https://github.com/galaxyproject/galaxy/commit/c7d7736472d06b4b8df169f6017f…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-09-19 (Sat, 19 Sep 2015)
Changed paths:
A test-data/3.bam
R test/functional/tools/compare_bam_as_sam.xml
M test/functional/tools/metadata_bam.xml
Log Message:
-----------
Merge pull request #757 from jmchilton/framework_tests
Fix failing framework tests.
Compare: https://github.com/galaxyproject/galaxy/compare/31c2d33ede1b...c7d7736472d0
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 4064d0c5980644f29ac06b83f28e7064479f28db
https://github.com/galaxyproject/galaxy/commit/4064d0c5980644f29ac06b83f28e…
Author: Michael R. Crusoe <crusoe(a)ucdavis.edu>
Date: 2015-09-13 (Sun, 13 Sep 2015)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
add Oxli datatypes
Commit: cecea3ebc6e9043df85989cd74899779a06c1e41
https://github.com/galaxyproject/galaxy/commit/cecea3ebc6e9043df85989cd7489…
Author: Michael R. Crusoe <michael.crusoe(a)gmail.com>
Date: 2015-09-13 (Sun, 13 Sep 2015)
Changed paths:
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/test/oxli_countgraph.oxlicg
A lib/galaxy/datatypes/test/oxli_graphlabels.oxligl
A lib/galaxy/datatypes/test/oxli_nodegraph.oxling
A lib/galaxy/datatypes/test/oxli_stoptags.oxlist
A lib/galaxy/datatypes/test/oxli_subset.oxliss
A lib/galaxy/datatypes/test/oxli_tagset.oxlits
Log Message:
-----------
added doctests + 1 fix + cleanup
Made helper function a proper @staticmethod
fixed error in sniffer (thank you doctests)
Moved registration lines after their respective classes
Added test data
Commit: 383e9e01817483b819e770e22cf9d2d0beebbd5b
https://github.com/galaxyproject/galaxy/commit/383e9e01817483b819e770e22cf9…
Author: Michael R. Crusoe <michael.crusoe(a)gmail.com>
Date: 2015-09-13 (Sun, 13 Sep 2015)
Changed paths:
M config/datatypes_conf.xml.sample
Log Message:
-----------
OxliLabelSet->OxliGraphLabels even in the config
Commit: 02df796c7236b51382f7b1f77d50cc1709c76356
https://github.com/galaxyproject/galaxy/commit/02df796c7236b51382f7b1f77d50…
Author: Michael R. Crusoe <michael.crusoe(a)gmail.com>
Date: 2015-09-13 (Sun, 13 Sep 2015)
Changed paths:
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
drop trailing whitespace
Commit: ce9fe44b939a693a87b18ab4dfaa1dfff4a715f4
https://github.com/galaxyproject/galaxy/commit/ce9fe44b939a693a87b18ab4dfaa…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2015-09-18 (Fri, 18 Sep 2015)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/test/oxli_countgraph.oxlicg
A lib/galaxy/datatypes/test/oxli_graphlabels.oxligl
A lib/galaxy/datatypes/test/oxli_nodegraph.oxling
A lib/galaxy/datatypes/test/oxli_stoptags.oxlist
A lib/galaxy/datatypes/test/oxli_subset.oxliss
A lib/galaxy/datatypes/test/oxli_tagset.oxlits
Log Message:
-----------
Merge pull request #721 from dib-lab/add-oxli-datatypes
add Oxli datatypes
Compare: https://github.com/galaxyproject/galaxy/compare/304e569730c8...ce9fe44b939a