Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 150c17b9e8adc03fe8684962ca76f19bf0c93705
https://github.com/galaxyproject/galaxy/commit/150c17b9e8adc03fe8684962ca76…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-09-17 (Thu, 17 Sep 2015)
Changed paths:
M lib/galaxy/model/__init__.py
M lib/galaxy/web/framework/__init__.py
M lib/galaxy/webapps/galaxy/controllers/requests_admin.py
M scripts/transfer.py
Log Message:
-----------
Do not explicitly require pexpect. If anyone wants to use the old and
mostly unused features that depend on it (namely remote sequencer
transfers via scp) they can pip install pexpect.
Commit: 63e35965401a2eac2ef3308913fb48be89961c10
https://github.com/galaxyproject/galaxy/commit/63e35965401a2eac2ef3308913fb…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-09-17 (Thu, 17 Sep 2015)
Changed paths:
M lib/galaxy/model/__init__.py
M lib/galaxy/web/framework/__init__.py
M lib/galaxy/webapps/galaxy/controllers/requests_admin.py
M scripts/transfer.py
Log Message:
-----------
Merge pull request #741 from natefoo/drop-pexpect
Do not explicitly require pexpect
Compare: https://github.com/galaxyproject/galaxy/compare/d717ec833de5...63e35965401a
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 1a5ef156d9d58966bee8dba95ac2cf2803fe16a7
https://github.com/galaxyproject/galaxy/commit/1a5ef156d9d58966bee8dba95ac2…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-09-16 (Wed, 16 Sep 2015)
Changed paths:
M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js
M client/galaxy/scripts/mvc/tools/tools-form-base.js
M lib/galaxy/managers/hdas.py
M lib/galaxy/webapps/galaxy/api/history_contents.py
M lib/galaxy/webapps/galaxy/api/tools.py
M static/maps/galaxy-app-base.js.map
M static/maps/mvc/dataset/dataset-li-edit.js.map
M static/maps/mvc/tools/tools-form-base.js.map
M static/scripts/galaxy-app-base.js
M static/scripts/mvc/dataset/dataset-li-edit.js
Log Message:
-----------
First pass of updating rerun to use the new modal. Pretty hacky, needs cleanup.
Commit: c51bfaa51aefff1e6be5c54b72fc51c4fc666264
https://github.com/galaxyproject/galaxy/commit/c51bfaa51aefff1e6be5c54b72fc…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-09-16 (Wed, 16 Sep 2015)
Changed paths:
M client/galaxy/scripts/mvc/tools/tools-form-base.js
M lib/galaxy/webapps/galaxy/api/jobs.py
M lib/galaxy/webapps/galaxy/api/tools.py
M lib/galaxy/webapps/galaxy/buildapp.py
M static/maps/mvc/tools/tools-form-base.js.map
M static/scripts/mvc/tools/tools-form-base.js
Log Message:
-----------
Flip API endpoint to the jobs API instead of hacking it into the existing tools api.
Commit: 5953fb592202cd12cf4cfb78900a4f1b89e85c79
https://github.com/galaxyproject/galaxy/commit/5953fb592202cd12cf4cfb78900a…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-09-16 (Wed, 16 Sep 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/jobs.py
Log Message:
-----------
Use tool.to_json optional kwd to parse old job inputs instead of doing it manually.
Commit: 3348715971bc85901553fe8b87f9d3962962b40c
https://github.com/galaxyproject/galaxy/commit/3348715971bc85901553fe8b87f9…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-09-17 (Thu, 17 Sep 2015)
Changed paths:
M lib/galaxy/webapps/galaxy/api/jobs.py
Log Message:
-----------
Add documentation to new API endpoint.
Commit: a7ca9586bb8bffaf61d751e6b21da46a187bbad1
https://github.com/galaxyproject/galaxy/commit/a7ca9586bb8bffaf61d751e6b21d…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-09-17 (Thu, 17 Sep 2015)
Changed paths:
M lib/galaxy/managers/hdas.py
M lib/galaxy/webapps/galaxy/api/jobs.py
Log Message:
-----------
Allow serialization of hdas without 'creating job', though we should probably look into how/why this can ever happen. Seems like there's a bug hidden here somewhere, but this allows the existing functionality to work and pass tests.
Commit: 7c78e01b7da020d11cad29c906536e1ff95b484d
https://github.com/galaxyproject/galaxy/commit/7c78e01b7da020d11cad29c90653…
Author: Aysam Guerler <aysam.guerler(a)gmail.com>
Date: 2015-09-17 (Thu, 17 Sep 2015)
Changed paths:
M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js
M client/galaxy/scripts/mvc/tools/tools-form-base.js
M lib/galaxy/managers/hdas.py
M lib/galaxy/webapps/galaxy/api/history_contents.py
M lib/galaxy/webapps/galaxy/api/jobs.py
M lib/galaxy/webapps/galaxy/api/tools.py
M lib/galaxy/webapps/galaxy/buildapp.py
M static/maps/galaxy-app-base.js.map
M static/maps/mvc/dataset/dataset-li-edit.js.map
M static/maps/mvc/tools/tools-form-base.js.map
M static/scripts/galaxy-app-base.js
M static/scripts/mvc/dataset/dataset-li-edit.js
M static/scripts/mvc/tools/tools-form-base.js
Log Message:
-----------
Merge pull request #739 from dannon/rerun_newform
Swap rerun to use iframe-less Galaxy.display.
Compare: https://github.com/galaxyproject/galaxy/compare/4d4e19b37904...7c78e01b7da0
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: d3e14ec6731d6f0524ff8f2575a100555de2fe25
https://github.com/galaxyproject/galaxy/commit/d3e14ec6731d6f0524ff8f2575a1…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2015-09-15 (Tue, 15 Sep 2015)
Changed paths:
M lib/galaxy/jobs/actions/post.py
Log Message:
-----------
Check to make sure a job is actually part of a workflow invocation prior to attempting to clean other workflow steps. This prevents an error when a 'clean intermediates' type job is remapped. TODO: Perhaps the job should actually be replaced in the workflow invocation as well, but this is a decent defensive check anyway.
Commit: 4d4e19b37904907201217bff7a6d295411b93968
https://github.com/galaxyproject/galaxy/commit/4d4e19b37904907201217bff7a6d…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2015-09-17 (Thu, 17 Sep 2015)
Changed paths:
M lib/galaxy/jobs/actions/post.py
Log Message:
-----------
Merge pull request #736 from dannon/pja_wf_rerun_fix
Check to make sure a job is actually part of a workflow invocation pr…
Compare: https://github.com/galaxyproject/galaxy/compare/43c13ee16267...4d4e19b37904