Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: da4c89f371b4c036cb2a26555fff60d711b95946
https://github.com/galaxyproject/infrastructure-playbook/commit/da4c89f371b…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2016-04-05 (Tue, 05 Apr 2016)
Changed paths:
M ansible.cfg
A galaxyenv/group_vars/cvmfsstratum1servers.yml
M galaxyenv/inventory
A jetstreamiuenv/files/slurm/launch
A jetstreamiuenv/files/slurm/slurm.conf.elastic
A jetstreamiuenv/files/slurm/terminate
A jetstreamiuenv/group_vars/all.yml
A jetstreamiuenv/group_vars/cvmfsclients.yml
A jetstreamiuenv/group_vars/galaxynodes.yml
A jetstreamiuenv/group_vars/slurmclients.yml
A jetstreamiuenv/group_vars/slurmservers.yml
A jetstreamiuenv/instance_inventory
A jetstreamiuenv/inventory
A jetstreamiuenv/launch.yml
A jetstreamiuenv/playbook.yml
A jetstreamiuenv/secret_group_vars/slurmclients.yml
A jetstreamiuenv/templates/slurm/slurm.conf.j2
A jetstreamiuenv/terminate.yml
M roles/cvmfs/handlers/main.yml
M roles/cvmfs/tasks/client.yml
M roles/cvmfs/tasks/localproxy.yml
M roles/cvmfs/tasks/main.yml
R roles/cvmfs/tasks/server.yml
A roles/cvmfs/tasks/stratum1.yml
R roles/cvmfs/templates/squid.conf.j2
A roles/cvmfs/templates/stratum1_squid.conf.j2
M roles/cvmfs/vars/main.yml
A roles/jetstream_nfs/handlers/main.yml
A roles/jetstream_nfs/tasks/main.yml
A roles/jetstream_nfs/tasks/server.yml
A roles/jetstream_nfs/vars/main.yml
A roles/slurm/handlers/main.yml
A roles/slurm/tasks/elastic.yml
A roles/slurm/tasks/main.yml
A roles/slurm/templates/slurmdbd.conf.j2
A roles/slurm/vars/debian.yml
A roles/slurm/vars/redhat.yml
A taccenv/group_vars/galaxynodes.yml
M taccenv/playbook.yml
Log Message:
-----------
Buncha updates for Jetstream
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 53f1782964d0fe447582d6f04a87ef0d6d8c5455
https://github.com/galaxyproject/galaxy/commit/53f1782964d0fe447582d6f04a87…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2016-04-04 (Mon, 04 Apr 2016)
Changed paths:
M run_tests.sh
M test/base/driver_util.py
Log Message:
-----------
Allow setting job_conf path for functional tests.
Commit: 7aa2d6840a8d0094c89a53cef06423701b677211
https://github.com/galaxyproject/galaxy/commit/7aa2d6840a8d0094c89a53cef064…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2016-04-04 (Mon, 04 Apr 2016)
Changed paths:
M scripts/functional_tests.py
M test/base/driver_util.py
A test/base/integration_util.py
A test/integration/__init__.py
A test/integration/embedded_pulsar_job_conf.xml
A test/integration/test_pulsar_embedded.py
Log Message:
-----------
Implement IntegrationTestCase and EmbeddedPulsarTestCase.
IntegrationTestCases differ from functional tests in that they start up a Galaxy instance configured on a per test class basis - so this new class of "integration tests" can test configuration modalities of Galaxy that cannot be tested with traditional Galaxy functional tests.
Commit: 40e123b84b6825882f9172c212258e809bd73961
https://github.com/galaxyproject/galaxy/commit/40e123b84b6825882f9172c21225…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2016-04-04 (Mon, 04 Apr 2016)
Changed paths:
M config/job_conf.xml.sample_advanced
Log Message:
-----------
Fixup embedded Pulsar job runner based on @mvdbeek's comments.
Commit: bdb41005c82678933656d651484cd1b9efeb55d1
https://github.com/galaxyproject/galaxy/commit/bdb41005c82678933656d651484c…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2016-04-04 (Mon, 04 Apr 2016)
Changed paths:
M config/job_conf.xml.sample_advanced
M lib/galaxy/jobs/runners/pulsar.py
Log Message:
-----------
Fix pulsar_conf/pulsar_config problem.
One was being validated and the other was being read and documented.
Commit: 2bd4de2025e55a9fc02ed3f74fbf297279e9d04f
https://github.com/galaxyproject/galaxy/commit/2bd4de2025e55a9fc02ed3f74fbf…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2016-04-05 (Tue, 05 Apr 2016)
Changed paths:
M test/integration/__init__.py
M test/integration/embedded_pulsar_job_conf.xml
Log Message:
-----------
Fix things found by @mvdbeek
Commit: d6d216c92efb973c9f03772fdab7ac51a3688692
https://github.com/galaxyproject/galaxy/commit/d6d216c92efb973c9f03772fdab7…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2016-04-05 (Tue, 05 Apr 2016)
Changed paths:
M config/job_conf.xml.sample_advanced
M lib/galaxy/jobs/runners/pulsar.py
M run_tests.sh
M scripts/functional_tests.py
M test/base/driver_util.py
A test/base/integration_util.py
A test/integration/__init__.py
A test/integration/embedded_pulsar_job_conf.xml
A test/integration/test_pulsar_embedded.py
Log Message:
-----------
Merge pull request #2078 from jmchilton/embed_dev
Enhancements for Pulsar Embedded Runner
Compare: https://github.com/galaxyproject/galaxy/compare/8d703e30a029...d6d216c92efb
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 3c8278c1bae103d5aaa3d264748c5f9049474dba
https://github.com/galaxyproject/galaxy/commit/3c8278c1bae103d5aaa3d264748c…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2016-02-26 (Fri, 26 Feb 2016)
Changed paths:
M config/galaxy.ini.sample
M lib/galaxy/config.py
M lib/galaxy/web/base/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
Log Message:
-----------
Implement new GIE proxy
This provides an alternative proxy to the original NodeJS proxy.
The implementation is done in golang, which has the nice property of compiling
to a single binary. While it's a negative in terms of number of devteam who
write that language, I'd argue it's not that much worse than nodejs in terms of
accessibility.
Features include:
- Simple rest-ish API instead of file-based IPC
- Automatic culling of containers, no more monitor_traffic.sh hacks
- Admin configurable, cross GIE timeout setting
Commit: 7830ee8724f488e1ea3efe49a8557aed74114811
https://github.com/galaxyproject/galaxy/commit/7830ee8724f488e1ea3efe49a855…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2016-02-26 (Fri, 26 Feb 2016)
Changed paths:
M config/galaxy.ini.sample
M lib/galaxy/config.py
Log Message:
-----------
Address @mvdbeek's issues
Commit: 5bfb87204841ddf566d078555e9f0458dd407de5
https://github.com/galaxyproject/galaxy/commit/5bfb87204841ddf566d078555e9f…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2016-02-26 (Fri, 26 Feb 2016)
Changed paths:
M lib/galaxy/web/proxy/__init__.py
Log Message:
-----------
Remove logging
Commit: d7ed11477bbe50e4f058f389ebb753b412ac7000
https://github.com/galaxyproject/galaxy/commit/d7ed11477bbe50e4f058f389ebb7…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2016-02-26 (Fri, 26 Feb 2016)
Changed paths:
M lib/galaxy/web/base/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
Log Message:
-----------
Whitespace changes for travis
Commit: 4c6cf5d4f9e2ecec8eb379ef8075ef20fb1da8fc
https://github.com/galaxyproject/galaxy/commit/4c6cf5d4f9e2ecec8eb379ef8075…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2016-02-26 (Fri, 26 Feb 2016)
Changed paths:
M lib/galaxy/config.py
Log Message:
-----------
Typo in config causes first run to fail
Commit: e37761346625aed03af3bdee337686b0e697fd7a
https://github.com/galaxyproject/galaxy/commit/e37761346625aed03af3bdee3376…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2016-04-05 (Tue, 05 Apr 2016)
Changed paths:
M config/galaxy.ini.sample
M lib/galaxy/config.py
M lib/galaxy/web/base/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
Log Message:
-----------
Merge pull request #1807 from erasche/gie-go-proxy-2
Implement new GIE proxy
Compare: https://github.com/galaxyproject/galaxy/compare/1543f0d92507...e37761346625