April 2016 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 7d3787: Replace common_util.url_join with util.build_url.
by GitHub 01 Apr '16

01 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7d378792cc697ded34a40c2ed6783cc27d534e81 https://github.com/galaxyproject/galaxy/commit/7d378792cc697ded34a40c2ed678… Author: Dave Bouvier <dave(a)bx.psu.edu> Date: 2016-03-31 (Thu, 31 Mar 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py Log Message: ----------- Replace common_util.url_join with util.build_url. Commit: 494384171f260a924517844f4ff30db40a7dddbc https://github.com/galaxyproject/galaxy/commit/494384171f260a924517844f4ff3… Author: Dave Bouvier <dave(a)bx.psu.edu> Date: 2016-03-31 (Thu, 31 Mar 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py Log Message: ----------- Do the same for tool_shed_get. Commit: d885367955a0aa1a6a389ae7d67a6829002f8254 https://github.com/galaxyproject/galaxy/commit/d885367955a0aa1a6a389ae7d67a… Author: Dave Bouvier <dave(a)bx.psu.edu> Date: 2016-03-31 (Thu, 31 Mar 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py Log Message: ----------- Fix indent broken with search/replace. Commit: 18596a2bb47d31b04e214c31b96a60b8a92fd70b https://github.com/galaxyproject/galaxy/commit/18596a2bb47d31b04e214c31b96a… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-04-01 (Fri, 01 Apr 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py Log Message: ----------- Merge pull request #2055 from davebx/url_join Replace common_util.url_join with util.build_url. Compare: https://github.com/galaxyproject/galaxy/compare/1dc2524e0970...18596a2bb47d

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[galaxyproject/galaxy] 205850: Use a stricter regexp for microseconds.
by GitHub 01 Apr '16

01 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 205850586e87af4fb3a9d7779eb1f2852ccf45c3 https://github.com/galaxyproject/galaxy/commit/205850586e87af4fb3a9d7779eb1… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-04-01 (Fri, 01 Apr 2016) Changed paths: M lib/galaxy/managers/base.py M test/unit/managers/test_HistoryContentsManager.py Log Message: ----------- Use a stricter regexp for microseconds. Commit: 1dc2524e0970b9c2e8b55045c19dd8f6586892a6 https://github.com/galaxyproject/galaxy/commit/1dc2524e0970b9c2e8b55045c19d… Author: carlfeberhard <carlfeberhard(a)users.noreply.github.com> Date: 2016-04-01 (Fri, 01 Apr 2016) Changed paths: M lib/galaxy/managers/base.py M test/unit/managers/test_HistoryContentsManager.py Log Message: ----------- Merge pull request #2065 from nsoranzo/stricter_microseconds_re Use a stricter regexp for microseconds. Compare: https://github.com/galaxyproject/galaxy/compare/569b87dc002f...1dc2524e0970

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[galaxyproject/galaxy] 78c839: Add a dictionary to params_dict that maps datasets...
by GitHub 01 Apr '16

01 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 78c839cccdd09f9eb79467e77f1ad247783efa58 https://github.com/galaxyproject/galaxy/commit/78c839cccdd09f9eb79467e77f1a… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2016-03-29 (Tue, 29 Mar 2016) Changed paths: M lib/galaxy/tools/evaluation.py Log Message: ----------- Add a dictionary to params_dict that maps datasets to identifier keys, so that element_identifiers for datasets in repeats are passed correctly to the tool wrapper. Commit: 569b87dc002f5fe09cb34496a71deda1e6678d1b https://github.com/galaxyproject/galaxy/commit/569b87dc002f5fe09cb34496a71d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-04-01 (Fri, 01 Apr 2016) Changed paths: M lib/galaxy/tools/evaluation.py Log Message: ----------- Merge pull request #2029 from mvdbeek/element_identifier_in_repeat Better element_identifier handling in repeat sections Compare: https://github.com/galaxyproject/galaxy/compare/ff48ad9b54fc...569b87dc002f

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[galaxyproject/infrastructure-playbook] 7812fd: Install CVMFS on nodes
by GitHub 01 Apr '16

01 Apr '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 7812fd520eee03ffae2ef0bb9b1e7f4a31b0d06e https://github.com/galaxyproject/infrastructure-playbook/commit/7812fd520ee… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-04-01 (Fri, 01 Apr 2016) Changed paths: A .gitignore A roles/cvmfs/handlers/main.yml A roles/cvmfs/tasks/client.yml A roles/cvmfs/tasks/main.yml A roles/cvmfs/vars/main.yml M taccenv/inventory M taccenv/playbook.yml Log Message: ----------- Install CVMFS on nodes

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