May 2016 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 35a716: Not all objects added to the runner work queue are
by GitHub 14 May '16

14 May '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: 35a716b8549bd575c96ef9cafe0e78a7e2048139 https://github.com/galaxyproject/galaxy/commit/35a716b8549bd575c96ef9cafe0e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py Log Message: ----------- Not all objects added to the runner work queue are JobWrappers/TaskWrappers as claimed in the comment. AsynchronousJobStates could also be added, and if the fail method was called this would result in the AttributeError of attempting to access an AJS' non-existent `get_id_tag` being logged in job.exeception as a red herring. Commit: 38209bbbac705612c11f7f3083e357e046cb5c64 https://github.com/galaxyproject/galaxy/commit/38209bbbac705612c11f7f3083e3… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-14 (Sat, 14 May 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py Log Message: ----------- Merge pull request #2350 from natefoo/fix-ajs-red-herring [16.04] Properly handle AsynchronousJobState objects in the job runner work queue Compare: https://github.com/galaxyproject/galaxy/compare/e28d305f3cda...38209bbbac70

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[galaxyproject/galaxy] 86050f: Build job success messages within tool form view
by GitHub 14 May '16

14 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 86050f2b67e84c3322363d67ef457e5303ce52c9 https://github.com/galaxyproject/galaxy/commit/86050f2b67e84c3322363d67ef45… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/style/less/base.less M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form.js M static/style/blue/base.css Log Message: ----------- Build job success messages within tool form view Commit: b5ea024cd17ba60cbf96eec0cd6ba0d84e1db208 https://github.com/galaxyproject/galaxy/commit/b5ea024cd17ba60cbf96eec0cd6b… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-14 (Sat, 14 May 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/style/less/base.less M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form.js M static/style/blue/base.css Log Message: ----------- Merge pull request #2355 from guerler/revise_template_001 Build job success messages within tool form view Compare: https://github.com/galaxyproject/galaxy/compare/db8afda49d59...b5ea024cd17b

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[galaxyproject/galaxy] 3a708a: Add filter_failed_datasets_from_collection.py scri...
by GitHub 14 May '16

14 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3a708a0089c87437bfe5336258a4a63a56a90d29 https://github.com/galaxyproject/galaxy/commit/3a708a0089c87437bfe5336258a4… Author: chambm <matt.chambers42(a)gmail.com> Date: 2016-05-13 (Fri, 13 May 2016) Changed paths: A scripts/api/filter_failed_datasets_from_collection.py Log Message: ----------- Add filter_failed_datasets_from_collection.py script Commit: 384bdbfe7099bfb5360e0b43af55c99da8b179b0 https://github.com/galaxyproject/galaxy/commit/384bdbfe7099bfb5360e0b43af55… Author: Matt Chambers <matt.chambers42(a)gmail.com> Date: 2016-05-13 (Fri, 13 May 2016) Changed paths: M scripts/api/filter_failed_datasets_from_collection.py Log Message: ----------- Fix flaky "errors" Commit: db8afda49d595d5472f4346ea46c6c263b193fff https://github.com/galaxyproject/galaxy/commit/db8afda49d595d5472f4346ea46c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-14 (Sat, 14 May 2016) Changed paths: A scripts/api/filter_failed_datasets_from_collection.py Log Message: ----------- Merge pull request #2358 from chambm/feature/filter_failed_datasets_from_collection Add filter_failed_datasets_from_collection.py script Compare: https://github.com/galaxyproject/galaxy/compare/bf7996087e8b...db8afda49d59

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[galaxyproject/infrastructure-playbook] 364ce6: Install LZO on execution hosts now that we don't s...
by GitHub 13 May '16

13 May '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 364ce6ed84c15a09a008b2bdcafb4aa192c4b842 https://github.com/galaxyproject/infrastructure-playbook/commit/364ce6ed84c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-13 (Fri, 13 May 2016) Changed paths: M jetstreamiuenv/group_vars/galaxynodes.yml M jetstreamtaccenv/group_vars/galaxynodes.yml M taccenv/group_vars/galaxynodes.yml Log Message: ----------- Install LZO on execution hosts now that we don't ship it (formerly an egg)

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[galaxyproject/galaxy] 8255e7: Do not pollute param_dict with a non JSONifiable d...
by GitHub 12 May '16

12 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8255e722cd21bb1cee594db3212657c6a22aa730 https://github.com/galaxyproject/galaxy/commit/8255e722cd21bb1cee594db32126… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-05-11 (Wed, 11 May 2016) Changed paths: M lib/galaxy/tools/evaluation.py Log Message: ----------- Do not pollute param_dict with a non JSONifiable dict When running a data manager with a dataset parameter, the job fails with the following backtrace: Traceback (most recent call last): File "/opt/galaxy/lib/galaxy/jobs/runners/__init__.py", line 166, in prepare_job job_wrapper.prepare() File "/opt/galaxy/lib/galaxy/jobs/__init__.py", line 885, in prepare tool_evaluator.set_compute_environment( compute_environment, get_special=get_special ) File "/opt/galaxy/lib/galaxy/tools/evaluation.py", line 107, in set_compute_environment self.tool.exec_before_job( self.app, inp_data, out_data, param_dict ) File "/opt/galaxy/lib/galaxy/tools/__init__.py", line 1956, in exec_before_job out.write( json.dumps( (json_params) ).encode('utf8') ) File "/usr/lib/python2.7/json/__init__.py", line 243, in dumps return _default_encoder.encode(obj) File "/usr/lib/python2.7/json/encoder.py", line 207, in encode chunks = self.iterencode(o, _one_shot=True) File "/usr/lib/python2.7/json/encoder.py", line 270, in iterencode return _iterencode(o, 0) TypeError: keys must be a string The bug was introduced in PR #2029. Commit: e28d305f3cda4377325190363057431f1f4f4d46 https://github.com/galaxyproject/galaxy/commit/e28d305f3cda4377325190363057… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M lib/galaxy/tools/evaluation.py Log Message: ----------- Merge pull request #2345 from nsoranzo/release_16.04_fix_for_2029 [16.04] Do not pollute param_dict with a non JSONifiable dict Commit: bf7996087e8b3da9c40f7cd575691cf7123d760d https://github.com/galaxyproject/galaxy/commit/bf7996087e8b3da9c40f7cd57569… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M lib/galaxy/tools/evaluation.py Log Message: ----------- Merge branch 'release_16.04' into dev Compare: https://github.com/galaxyproject/galaxy/compare/366056c0b70a...bf7996087e8b

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[galaxyproject/usegalaxy-playbook] f23d6f: Updated Main (last night, forgot to commit)
by GitHub 12 May '16

12 May '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f23d6f207c8703a995805fdf28f9e84eac2a925c https://github.com/galaxyproject/usegalaxy-playbook/commit/f23d6f207c8703a9… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M production/group_vars/all.yml Log Message: ----------- Updated Main (last night, forgot to commit) Commit: 2ba1cc64570ed7ef9c159ae2ec54bb8c9cf74162 https://github.com/galaxyproject/usegalaxy-playbook/commit/2ba1cc64570ed7ef… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml Log Message: ----------- Mutable configs from Main Commit: 65cd45a384f96edf980db55af5ae6d84ac9ffb68 https://github.com/galaxyproject/usegalaxy-playbook/commit/65cd45a384f96edf… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Fix deeptools destinations, also add LD_LIBRARY_PATH for CloudMap to use rpy/R Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/89ad6d275775...…

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[galaxyproject/galaxy] 8255e7: Do not pollute param_dict with a non JSONifiable d...
by GitHub 12 May '16

12 May '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: 8255e722cd21bb1cee594db3212657c6a22aa730 https://github.com/galaxyproject/galaxy/commit/8255e722cd21bb1cee594db32126… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-05-11 (Wed, 11 May 2016) Changed paths: M lib/galaxy/tools/evaluation.py Log Message: ----------- Do not pollute param_dict with a non JSONifiable dict When running a data manager with a dataset parameter, the job fails with the following backtrace: Traceback (most recent call last): File "/opt/galaxy/lib/galaxy/jobs/runners/__init__.py", line 166, in prepare_job job_wrapper.prepare() File "/opt/galaxy/lib/galaxy/jobs/__init__.py", line 885, in prepare tool_evaluator.set_compute_environment( compute_environment, get_special=get_special ) File "/opt/galaxy/lib/galaxy/tools/evaluation.py", line 107, in set_compute_environment self.tool.exec_before_job( self.app, inp_data, out_data, param_dict ) File "/opt/galaxy/lib/galaxy/tools/__init__.py", line 1956, in exec_before_job out.write( json.dumps( (json_params) ).encode('utf8') ) File "/usr/lib/python2.7/json/__init__.py", line 243, in dumps return _default_encoder.encode(obj) File "/usr/lib/python2.7/json/encoder.py", line 207, in encode chunks = self.iterencode(o, _one_shot=True) File "/usr/lib/python2.7/json/encoder.py", line 270, in iterencode return _iterencode(o, 0) TypeError: keys must be a string The bug was introduced in PR #2029. Commit: e28d305f3cda4377325190363057431f1f4f4d46 https://github.com/galaxyproject/galaxy/commit/e28d305f3cda4377325190363057… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M lib/galaxy/tools/evaluation.py Log Message: ----------- Merge pull request #2345 from nsoranzo/release_16.04_fix_for_2029 [16.04] Do not pollute param_dict with a non JSONifiable dict Compare: https://github.com/galaxyproject/galaxy/compare/013813691ac1...e28d305f3cda

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[galaxyproject/galaxy] 366056: Rebuild following client libs update
by GitHub 12 May '16

12 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 366056c0b70a748f680e4fb8ca8c04565129af2b https://github.com/galaxyproject/galaxy/commit/366056c0b70a748f680e4fb8ca8c… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Rebuild following client libs update

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[galaxyproject/galaxy] 19a167: UI: minor updates to libraries
by GitHub 12 May '16

12 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 19a1679c94ca0a571da0453022aae15a0fce2b44 https://github.com/galaxyproject/galaxy/commit/19a1679c94ca0a571da0453022aa… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-09 (Mon, 09 May 2016) Changed paths: M client/galaxy/scripts/libs/bootstrap-tour.js M client/galaxy/scripts/libs/d3.js M client/galaxy/scripts/libs/raven.js M client/galaxy/scripts/libs/require.js M client/galaxy/scripts/libs/tracekit.js Log Message: ----------- UI: minor updates to libraries Commit: bab9e44db17ff8871567b6d1933d1990ee7f1af9 https://github.com/galaxyproject/galaxy/commit/bab9e44db17ff8871567b6d1933d… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-09 (Mon, 09 May 2016) Changed paths: M static/maps/libs/bootstrap-tour.js.map M static/maps/libs/d3.js.map M static/maps/libs/raven.js.map M static/maps/libs/require.js.map M static/maps/libs/tracekit.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/libs/bootstrap-tour.js M static/scripts/libs/d3.js M static/scripts/libs/raven.js M static/scripts/libs/require.js M static/scripts/libs/tracekit.js Log Message: ----------- (re-build client) Commit: af15f55ea9c0e511c10e1e3b0bb45c90741c3ecf https://github.com/galaxyproject/galaxy/commit/af15f55ea9c0e511c10e1e3b0bb4… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-09 (Mon, 09 May 2016) Changed paths: M client/bower.json M client/galaxy/scripts/libs/backbone.js M client/galaxy/scripts/libs/jquery/jquery.js M client/galaxy/scripts/libs/jquery/jquery.migrate.js M client/galaxy/scripts/libs/raven.js M client/galaxy/scripts/libs/require.js M client/galaxy/scripts/libs/underscore.js M static/maps/libs/backbone.js.map M static/maps/libs/jquery/jquery.js.map M static/maps/libs/jquery/jquery.migrate.js.map M static/maps/libs/raven.js.map M static/maps/libs/require.js.map M static/maps/libs/underscore.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/libs/backbone.js M static/scripts/libs/jquery/jquery.js M static/scripts/libs/jquery/jquery.migrate.js M static/scripts/libs/raven.js M static/scripts/libs/require.js M static/scripts/libs/underscore.js Log Message: ----------- UI: major library updates jquery 1.12.3 jquery-migrate 1.4.0 ravenjs 3.0.3 requirejs 2.2.0 tracekit 0.4.3 underscore 1.8.3 backbone 1.3.3 bootstrap-tour 0.10.3 d3 3.5.17 Commit: 7afb7616ff4ec362b34978352ac50c132f530c56 https://github.com/galaxyproject/galaxy/commit/7afb7616ff4ec362b34978352ac5… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-09 (Mon, 09 May 2016) Changed paths: M test/qunit/tests/form_tests.js Log Message: ----------- Tests: send empty obj to qunit/form_tests `null` caused a script error in require. Commit: 0844852388a16f737557ae58b7a7dd66f43656f0 https://github.com/galaxyproject/galaxy/commit/0844852388a16f737557ae58b7a7… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-10 (Tue, 10 May 2016) Changed paths: M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/ui/popup-menu.js M client/galaxy/scripts/ui/hoverhighlight.js M client/galaxy/scripts/ui/loading-indicator.js M client/galaxy/scripts/ui/mode-button.js M client/galaxy/scripts/ui/pagination.js M client/galaxy/scripts/ui/peek-column-selector.js M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/ui/hoverhighlight.js.map M static/maps/ui/loading-indicator.js.map M static/maps/ui/mode-button.js.map M static/maps/ui/pagination.js.map M static/maps/ui/peek-column-selector.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js Log Message: ----------- UI: remove deprecated jQuery.size() (from selected scripts) Commit: 54f25f262cdd2242e61342521c5643af037149c7 https://github.com/galaxyproject/galaxy/commit/54f25f262cdd2242e61342521c56… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-10 (Tue, 10 May 2016) Changed paths: M Makefile R config/plugins/visualizations/graphview/config/graphview.xml R config/plugins/visualizations/graphview/static/graphview.css R config/plugins/visualizations/graphview/static/graphview.js R config/plugins/visualizations/graphview/static/jquery.rdfquery.core.js R config/plugins/visualizations/graphview/templates/graphview.mako Log Message: ----------- (merge conflicts) Commit: ecfbf53e6600c8590d3e9fcec9022bf540339985 https://github.com/galaxyproject/galaxy/commit/ecfbf53e6600c8590d3e9fcec902… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-11 (Wed, 11 May 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-model.js M lib/galaxy/tools/errors.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/web/base/interactive_environments.py M lib/galaxy/web/proxy/__init__.py M static/maps/mvc/history/history-model.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-model.js Log Message: ----------- (merge conflicts) Commit: ab05091379463cf6e3d9c416cd601051aacceabd https://github.com/galaxyproject/galaxy/commit/ab05091379463cf6e3d9c416cd60… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-12 (Thu, 12 May 2016) Changed paths: M client/bower.json M client/galaxy/scripts/libs/backbone.js M client/galaxy/scripts/libs/bootstrap-tour.js M client/galaxy/scripts/libs/d3.js M client/galaxy/scripts/libs/jquery/jquery.js M client/galaxy/scripts/libs/jquery/jquery.migrate.js M client/galaxy/scripts/libs/raven.js M client/galaxy/scripts/libs/require.js M client/galaxy/scripts/libs/tracekit.js M client/galaxy/scripts/libs/underscore.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/ui/popup-menu.js M client/galaxy/scripts/ui/hoverhighlight.js M client/galaxy/scripts/ui/loading-indicator.js M client/galaxy/scripts/ui/mode-button.js M client/galaxy/scripts/ui/pagination.js M client/galaxy/scripts/ui/peek-column-selector.js M static/maps/libs/backbone.js.map M static/maps/libs/bootstrap-tour.js.map M static/maps/libs/d3.js.map M static/maps/libs/jquery/jquery.js.map M static/maps/libs/jquery/jquery.migrate.js.map M static/maps/libs/raven.js.map M static/maps/libs/require.js.map M static/maps/libs/tracekit.js.map M static/maps/libs/underscore.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/ui/hoverhighlight.js.map M static/maps/ui/loading-indicator.js.map M static/maps/ui/mode-button.js.map M static/maps/ui/pagination.js.map M static/maps/ui/peek-column-selector.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/libs/backbone.js M static/scripts/libs/bootstrap-tour.js M static/scripts/libs/d3.js M static/scripts/libs/jquery/jquery.js M static/scripts/libs/jquery/jquery.migrate.js M static/scripts/libs/raven.js M static/scripts/libs/require.js M static/scripts/libs/tracekit.js M static/scripts/libs/underscore.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M test/qunit/tests/form_tests.js Log Message: ----------- Merge pull request #2328 from carlfeberhard/client.libs-update Client library updates Compare: https://github.com/galaxyproject/galaxy/compare/09e8f0ab9b83...ab0509137946

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[galaxyproject/galaxy] 7e63ae: Update qunit and sinon
by GitHub 11 May '16

11 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7e63ae66cd93d2cf046484cfa07cf6453656d8c1 https://github.com/galaxyproject/galaxy/commit/7e63ae66cd93d2cf046484cfa07c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-10 (Tue, 10 May 2016) Changed paths: M client/galaxy/scripts/utils/metrics-logger.js M static/maps/utils/metrics-logger.js.map M static/scripts/utils/metrics-logger.js M test/qunit/test-common.js R test/qunit/test-libs/qunit-1.14.0.css R test/qunit/test-libs/qunit-1.14.0.js A test/qunit/test-libs/qunit-1.23.1.css A test/qunit/test-libs/qunit-1.23.1.js A test/qunit/test-libs/sinon-1.17.3.js R test/qunit/test-libs/sinon-1.9.1.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/workflow_editor_tests.js Log Message: ----------- Update qunit and sinon Commit: b7dc5cdf8f66f964e17ed41564b410df97bea9d0 https://github.com/galaxyproject/galaxy/commit/b7dc5cdf8f66f964e17ed41564b4… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-10 (Tue, 10 May 2016) Changed paths: M test/qunit/tests/page_tests.js Log Message: ----------- Fix page test Commit: 74a53c4ebd99fe928ef92e89dba5034945724e5e https://github.com/galaxyproject/galaxy/commit/74a53c4ebd99fe928ef92e89dba5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-10 (Tue, 10 May 2016) Changed paths: M test/qunit/test-common.js Log Message: ----------- QUnit can't be shim/init'd since it's a proper AMD module including a define. Commit: 6e5aea08c49603c415ac58f8edf6608f03ca54c3 https://github.com/galaxyproject/galaxy/commit/6e5aea08c49603c415ac58f8edf6… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-10 (Tue, 10 May 2016) Changed paths: M test/qunit/tests/metrics-logger.js Log Message: ----------- Remove unnecessary MockStorage from Metrics test Commit: 468f17418e9445a18d8b2c2c62fe1d884c331fa4 https://github.com/galaxyproject/galaxy/commit/468f17418e9445a18d8b2c2c62fe… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-11 (Wed, 11 May 2016) Changed paths: M test/qunit/tests/list-of-pairs-collection-creator.js Log Message: ----------- Fix collection test Commit: 09e8f0ab9b838025b5c9b4e9936774018cf789da https://github.com/galaxyproject/galaxy/commit/09e8f0ab9b838025b5c9b4e99367… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-11 (Wed, 11 May 2016) Changed paths: M client/galaxy/scripts/utils/metrics-logger.js M static/maps/utils/metrics-logger.js.map M static/scripts/utils/metrics-logger.js M test/qunit/test-common.js R test/qunit/test-libs/qunit-1.14.0.css R test/qunit/test-libs/qunit-1.14.0.js A test/qunit/test-libs/qunit-1.23.1.css A test/qunit/test-libs/qunit-1.23.1.js A test/qunit/test-libs/sinon-1.17.3.js R test/qunit/test-libs/sinon-1.9.1.js M test/qunit/tests/list-of-pairs-collection-creator.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/page_tests.js M test/qunit/tests/workflow_editor_tests.js Log Message: ----------- Merge pull request #2338 from guerler/update_qunit_000 Update qunit and sinon Compare: https://github.com/galaxyproject/galaxy/compare/fcc0d123ea4e...09e8f0ab9b83

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