Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: b787af633f4b3431e536b34e2080917cc4b96b95
https://github.com/galaxyproject/infrastructure-playbook/commit/b787af633f4…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2016-05-17 (Tue, 17 May 2016)
Changed paths:
M jetstreamiuenv/group_vars/controllers.yml
M jetstreamiuenv/group_vars/galaxynodes.yml
M jetstreamtaccenv/group_vars/controllers.yml
M jetstreamtaccenv/group_vars/galaxynodes.yml
M jetstreamtaccenv/group_vars/slurmclients.yml
A roles/jetstream_nfs/tasks/client.yml
M roles/jetstream_nfs/tasks/main.yml
A roles/jetstream_nfs/templates/auto.jetstream.j2
Log Message:
-----------
Use autofs for mounting Jetstream scratch on nodes
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: 938fd7d2c7c645277c46e63a618d597010040f36
https://github.com/galaxyproject/infrastructure-playbook/commit/938fd7d2c7c…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2016-05-17 (Tue, 17 May 2016)
Changed paths:
M jetstreamiuenv/group_vars/controllers.yml
M jetstreamiuenv/group_vars/galaxynodes.yml
M jetstreamtaccenv/group_vars/controllers.yml
M jetstreamtaccenv/group_vars/galaxynodes.yml
A roles/jetstream_nfs/tasks/client.yml
M roles/jetstream_nfs/tasks/main.yml
A roles/jetstream_nfs/templates/auto.jetstream.j2
Log Message:
-----------
Use autofs for mounting Jetstream scratch on nodes
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: df05c32750ea5a0da4b8160fa34bea293922e636
https://github.com/galaxyproject/infrastructure-playbook/commit/df05c32750e…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2016-05-17 (Tue, 17 May 2016)
Changed paths:
M jetstreamtaccenv/group_vars/galaxynodes.yml
A roles/jetstream_nfs/tasks/client.yml
M roles/jetstream_nfs/tasks/main.yml
A roles/jetstream_nfs/templates/auto.jetstream.j2
Log Message:
-----------
Use autofs for mounting Jetstream scratch on nodes
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 10ef0a3b00681dbab09119cc057a3ebe47e3d4f9
https://github.com/galaxyproject/galaxy/commit/10ef0a3b00681dbab09119cc057a…
Author: Bjoern Gruening <bjoern.gruening(a)gmail.com>
Date: 2016-04-30 (Sat, 30 Apr 2016)
Changed paths:
M config/job_conf.xml.sample_advanced
Log Message:
-----------
HTCondor and Docker documentation
Commit: ba409e75181224c80f0acf02530cac31fe28461c
https://github.com/galaxyproject/galaxy/commit/ba409e75181224c80f0acf02530c…
Author: Bjoern Gruening <bjoern.gruening(a)gmail.com>
Date: 2016-04-30 (Sat, 30 Apr 2016)
Changed paths:
M lib/galaxy/jobs/runners/condor.py
Log Message:
-----------
enable HTCondor Docker integration
Commit: 3ab43e38f5b2d63c300e99635234051956905f94
https://github.com/galaxyproject/galaxy/commit/3ab43e38f5b2d63c300e99635234…
Author: Bjoern Gruening <bjoern.gruening(a)gmail.com>
Date: 2016-04-30 (Sat, 30 Apr 2016)
Changed paths:
M test/functional/tools/catDocker.xml
Log Message:
-----------
add new Docker Image. We need to have bash inside of Docker.
Commit: ead96a55a9d05602a7b241d2d8b8acf557ce9425
https://github.com/galaxyproject/galaxy/commit/ead96a55a9d05602a7b241d2d8b8…
Author: Bjoern Gruening <bjoern.gruening(a)gmail.com>
Date: 2016-05-01 (Sun, 01 May 2016)
Changed paths:
M lib/galaxy/jobs/__init__.py
Log Message:
-----------
Add the ability to set the default handler and destination via environment variables.
Commit: 7bd595b8f1caf4ea5085a41ba8129653d48f83a7
https://github.com/galaxyproject/galaxy/commit/7bd595b8f1caf4ea5085a41ba812…
Author: Bjoern Gruening <bjoern.gruening(a)gmail.com>
Date: 2016-05-02 (Mon, 02 May 2016)
Changed paths:
M test/functional/tools/catDocker.xml
Log Message:
-----------
Revert "add new Docker Image. We need to have bash inside of Docker."
This reverts commit 3ab43e38f5b2d63c300e99635234051956905f94.
Commit: 917c882255ff1261bb99bb4bfc8bd1e165e26b96
https://github.com/galaxyproject/galaxy/commit/917c882255ff1261bb99bb4bfc8b…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2016-05-16 (Mon, 16 May 2016)
Changed paths:
M config/job_conf.xml.sample_advanced
M lib/galaxy/jobs/runners/condor.py
M lib/galaxy/tools/deps/containers.py
Log Message:
-----------
Revise HTCondor Docker image resolution.
Bring inline with the rest of the job runner's Docker image resolution stuff. Order of reosolution is:
- Use destination specified override if found: docker_container_id_override
- Use the tool specified container if not found and no override: see tool
- Else - use docker_default_container_id.
This adjusts the documentation to reflect this and make the the parameters more consistent throughout. I've modified this so docker_image (the old name introduced by the Docker Condor PR) still works - but I have left it undocumented intentionally for consistency.
Commit: 8e6211aeb1bc3ffa696d61be89954d6e68215be4
https://github.com/galaxyproject/galaxy/commit/8e6211aeb1bc3ffa696d61be8995…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2016-05-17 (Tue, 17 May 2016)
Changed paths:
M config/job_conf.xml.sample_advanced
M lib/galaxy/jobs/runners/condor.py
M lib/galaxy/tools/deps/containers.py
Log Message:
-----------
Merge pull request #10 from jmchilton/htcondor_docker
Revise HTCondor Docker image resolution.
Commit: c2ea4ee5266370ef1378df922af5a0c96d0f835c
https://github.com/galaxyproject/galaxy/commit/c2ea4ee5266370ef1378df922af5…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2016-05-17 (Tue, 17 May 2016)
Changed paths:
M config/job_conf.xml.sample_advanced
M lib/galaxy/jobs/__init__.py
M lib/galaxy/jobs/runners/condor.py
M lib/galaxy/tools/deps/containers.py
Log Message:
-----------
Merge pull request #2278 from bgruening/htcondor_docker
HTCondor Docker Integration
Compare: https://github.com/galaxyproject/galaxy/compare/6fc2ae42cd4f...c2ea4ee52663
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: c749e13973ee8a5f46a486411fbfd14fdda578bd
https://github.com/galaxyproject/galaxy/commit/c749e13973ee8a5f46a486411fbf…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2016-05-16 (Mon, 16 May 2016)
Changed paths:
M client/galaxy/scripts/mvc/form/form-section.js
M client/galaxy/scripts/mvc/form/form-view.js
M client/galaxy/scripts/mvc/tool/tool-form-base.js
M client/galaxy/scripts/mvc/ui/ui-portlet.js
M client/galaxy/style/less/ui.less
M static/maps/mvc/form/form-section.js.map
M static/maps/mvc/form/form-view.js.map
M static/maps/mvc/tool/tool-form-base.js.map
M static/maps/mvc/ui/ui-portlet.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/mvc/form/form-section.js
M static/scripts/mvc/form/form-view.js
M static/scripts/mvc/tool/tool-form-base.js
M static/scripts/mvc/ui/ui-portlet.js
M static/style/blue/base.css
Log Message:
-----------
Revise portlet view
Commit: 180eeeafe3385777861d06241c97633145fd4f82
https://github.com/galaxyproject/galaxy/commit/180eeeafe3385777861d06241c97…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-05-17 (Tue, 17 May 2016)
Changed paths:
M client/galaxy/scripts/mvc/form/form-section.js
M client/galaxy/scripts/mvc/form/form-view.js
M client/galaxy/scripts/mvc/tool/tool-form-base.js
M client/galaxy/scripts/mvc/ui/ui-portlet.js
M client/galaxy/style/less/ui.less
M static/maps/mvc/form/form-section.js.map
M static/maps/mvc/form/form-view.js.map
M static/maps/mvc/tool/tool-form-base.js.map
M static/maps/mvc/ui/ui-portlet.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/mvc/form/form-section.js
M static/scripts/mvc/form/form-view.js
M static/scripts/mvc/tool/tool-form-base.js
M static/scripts/mvc/ui/ui-portlet.js
M static/style/blue/base.css
Log Message:
-----------
Merge branch 'revise_portlet_000' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/665809f25cb0...180eeeafe338