May 2016 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] ff7695: Pulsar for Jetstream @ IU, also install Paste to f...
by GitHub 26 May '16

26 May '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ff769585ecdf0f79b23cdf47829f003c4a1980d4 https://github.com/galaxyproject/usegalaxy-playbook/commit/ff769585ecdf0f79… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-26 (Thu, 26 May 2016) Changed paths: A production/host_vars/jetstream-iu0.galaxyproject.org.yml M production/host_vars/jetstream-tacc0.galaxyproject.org.yml M production/inventory A stage/host_vars/jetstream-iu0.galaxyproject.org.yml M stage/host_vars/jetstream-tacc0.galaxyproject.org.yml M stage/inventory Log Message: ----------- Pulsar for Jetstream @ IU, also install Paste to fix Pulsar logging

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[galaxyproject/galaxy] 4bfcce: Raise Exception if watch_tools has an unrecognized...
by GitHub 26 May '16

26 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4bfcce0d563f25d88d88baa49be6fbdb324889ff https://github.com/galaxyproject/galaxy/commit/4bfcce0d563f25d88d88baa49be6… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-05-26 (Thu, 26 May 2016) Changed paths: M lib/galaxy/tools/toolbox/watcher.py Log Message: ----------- Raise Exception if watch_tools has an unrecognized value Also do not log message "Watchdog library unavailable" if watch_tools is False Commit: 4eeb73ec8c84fa8143a1232a9c88aa48b151afd9 https://github.com/galaxyproject/galaxy/commit/4eeb73ec8c84fa8143a1232a9c88… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-26 (Thu, 26 May 2016) Changed paths: M lib/galaxy/tools/toolbox/watcher.py Log Message: ----------- Merge pull request #2418 from nsoranzo/toolbox_watcher Raise Exception if watch_tools has an unrecognized value Compare: https://github.com/galaxyproject/galaxy/compare/27b70ca9849b...4eeb73ec8c84

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[galaxyproject/galaxy] be97d7: Replace frame dictionary with regular view
by GitHub 25 May '16

25 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: be97d7e6db1d963c64dceeb06c68440500177ba5 https://github.com/galaxyproject/galaxy/commit/be97d7e6db1d963c64dceeb06c68… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/style/less/frame.less M static/maps/layout/scratchbook.js.map M static/maps/mvc/ui/ui-frames.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js M static/scripts/mvc/ui/ui-frames.js M static/style/blue/base.css Log Message: ----------- Replace frame dictionary with regular view Commit: b9e2983e909cc74509214e864820467a256ea336 https://github.com/galaxyproject/galaxy/commit/b9e2983e909cc74509214e864820… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/style/less/frame.less M static/maps/mvc/ui/ui-frames.js.map M static/scripts/mvc/ui/ui-frames.js Log Message: ----------- Remove grid lock feature Commit: 53fa566a54eb8d6be69e769ebd9799a9d392db3f https://github.com/galaxyproject/galaxy/commit/53fa566a54eb8d6be69e769ebd97… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-frames.js M static/maps/mvc/ui/ui-frames.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-frames.js M static/style/blue/base.css Log Message: ----------- Use regular initialization from frame shadow view Commit: 44bd042624602648d87a24805e94e110102286ed https://github.com/galaxyproject/galaxy/commit/44bd042624602648d87a24805e94… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/style/less/frame.less M static/maps/layout/scratchbook.js.map M static/maps/mvc/ui/ui-frames.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js M static/scripts/mvc/ui/ui-frames.js M static/style/blue/base.css Log Message: ----------- Add support for optional header items/icons Commit: e16c3f34f39d0705a26081eafc5c321d6aca56c9 https://github.com/galaxyproject/galaxy/commit/e16c3f34f39d0705a26081eafc5c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-frames.js M static/maps/mvc/ui/ui-frames.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-frames.js Log Message: ----------- Remove unused class variables, reduce indention Commit: 64cb97cfc90fc93e550c1b74e1c62a9a0d4e656c https://github.com/galaxyproject/galaxy/commit/64cb97cfc90fc93e550c1b74e1c6… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/ui/ui-frames.js M static/maps/layout/scratchbook.js.map M static/maps/mvc/ui/ui-frames.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js M static/scripts/mvc/ui/ui-frames.js Log Message: ----------- Parse view instead of content dom on click Commit: 617cd2de82caca3f174479d3602bb45236da5175 https://github.com/galaxyproject/galaxy/commit/617cd2de82caca3f174479d3602b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/style/less/frame.less M static/maps/layout/scratchbook.js.map M static/maps/mvc/ui/ui-frames.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js M static/scripts/mvc/ui/ui-frames.js M static/style/blue/base.css Log Message: ----------- Add event handlers to navigate through history Commit: a12c1cb45ba3026c2ff6d8cc9d70c622e26718f6 https://github.com/galaxyproject/galaxy/commit/a12c1cb45ba3026c2ff6d8cc9d70… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M static/maps/layout/scratchbook.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js Log Message: ----------- Cache histories individually Commit: 197f2283f92ed851c8a8254eb6c020b90023188d https://github.com/galaxyproject/galaxy/commit/197f2283f92ed851c8a8254eb6c0… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-model.js M lib/galaxy/jobs/runners/condor.py M lib/galaxy/jobs/runners/slurm.py M lib/galaxy/managers/histories.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/deps/commands.py M lib/galaxy/tools/deps/conda_util.py M lib/galaxy/tools/parser/xml.py M lib/galaxy/tools/parser/yaml.py A lib/galaxy/tools/verify/__init__.py A lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/tabular.py A lib/galaxy/tools/verify/asserts/text.py A lib/galaxy/tools/verify/asserts/xml.py A lib/galaxy/tools/verify/test_data.py M static/maps/mvc/history/history-model.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-model.js M templates/show_params.mako M test/api/test_tools.py M test/api/test_workflows.py R test/base/asserts/__init__.py R test/base/asserts/tabular.py R test/base/asserts/text.py R test/base/asserts/xml.py R test/base/test_data.py M test/base/twilltestcase.py M test/functional/test_toolbox.py A test/functional/tools/composite_output_tests.xml M test/functional/tools/samples_tool_conf.xml M test/functional/tools/simple_constructs.yml M test/shed_functional/base/twilltestcase.py M test/unit/managers/test_HistoryManager.py M tools/stats/gsummary.xml Log Message: ----------- Merge branch 'dev' into scratchbook_slider_000 Commit: 27b70ca9849b241c93958c4b18af38ec576cbd3e https://github.com/galaxyproject/galaxy/commit/27b70ca9849b241c93958c4b18af… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-05-26 (Thu, 26 May 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/style/less/frame.less M static/maps/layout/scratchbook.js.map M static/maps/mvc/ui/ui-frames.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js M static/scripts/mvc/ui/ui-frames.js M static/style/blue/base.css Log Message: ----------- Merge pull request #2396 from guerler/scratchbook_slider_000 Add history navigation options for dataset frames to scratch book Compare: https://github.com/galaxyproject/galaxy/compare/50359e1633b5...27b70ca9849b

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[galaxyproject/galaxy] 66947c: Provide backward-compatible galaxy.datatypes.check...
by GitHub 25 May '16

25 May '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/galaxy Commit: 66947c20ef2c0db3532d7e4f3edc5897d7d75ab7 https://github.com/galaxyproject/galaxy/commit/66947c20ef2c0db3532d7e4f3edc… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-23 (Mon, 23 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Provide backward-compatible galaxy.datatypes.checkers module. xref http://dev.list.galaxyproject.org/STACKS-error-td4669428.html Commit: 5fbb65e5033d23b9751251a4a935b4c76ffd65d5 https://github.com/galaxyproject/galaxy/commit/5fbb65e5033d23b9751251a4a935… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-24 (Tue, 24 May 2016) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Catch all exceptions in slurm's _complete_terminal_job() to prevent looping job completion Commit: b6d65da83d77167482a3fe3a706c249abad6dbfa https://github.com/galaxyproject/galaxy/commit/b6d65da83d77167482a3fe3a706c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-24 (Tue, 24 May 2016) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Fix linting error Commit: 2a29e92ef9d8e560988d6e64d06c5cbbf79098a1 https://github.com/galaxyproject/galaxy/commit/2a29e92ef9d8e560988d6e64d06c… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-24 (Tue, 24 May 2016) Changed paths: M lib/galaxy/managers/histories.py M test/unit/managers/test_HistoryManager.py Log Message: ----------- API, history: fix order in most_recently_used - Fix ascending order used in HistoryManager.most_recent to descending - Slightly update the docs to reflect actual value better - Add tests Commit: 47a65160960003244091d4fd441111c257e9e8d9 https://github.com/galaxyproject/galaxy/commit/47a65160960003244091d4fd4411… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/managers/histories.py M test/unit/managers/test_HistoryManager.py Log Message: ----------- Merge pull request #2407 from carlfeberhard/fix.most_recently_used [16.01] API, history: fix order in most_recently_used Commit: 7dcf850ed5203196371fa3d20800b0b864c01158 https://github.com/galaxyproject/galaxy/commit/7dcf850ed5203196371fa3d20800… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Merge pull request #2402 from natefoo/slurm-fixes [16.04] Catch all exceptions in slurm's _complete_terminal_job() to prevent looping job completion Commit: 5db5e1395880876ac3066fc91397e7cb1618ea62 https://github.com/galaxyproject/galaxy/commit/5db5e1395880876ac3066fc91397… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/managers/histories.py M test/unit/managers/test_HistoryManager.py Log Message: ----------- Merge branch 'release_16.01' into release_16.04 Conflicts: test/unit/managers/test_HistoryManager.py Commit: 71f9d9621640ca77880a879da3a149467f5ec934 https://github.com/galaxyproject/galaxy/commit/71f9d9621640ca77880a879da3a1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Remove HTML_CHECK_LINES from checkers export. As suggested by @nsoranzo and @dannon, we will restore if and only if someone finds a datatype that uses it. Commit: c63bf911bc9cae4d0400a3f3fad03402c3f7a18a https://github.com/galaxyproject/galaxy/commit/c63bf911bc9cae4d0400a3f3fad0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Merge pull request #2389 from jmchilton/checkers_restore [16.04] Provide backward compatible galaxy.datatypes.checkers module... Commit: 5a97b8feac49df3f1e9fe0b2e0645b9240eb8291 https://github.com/galaxyproject/galaxy/commit/5a97b8feac49df3f1e9fe0b2e064… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/jobs/runners/slurm.py M lib/galaxy/managers/histories.py M lib/galaxy/util/checkers.py M test/unit/managers/test_HistoryManager.py Log Message: ----------- Merge branch 'release_16.04' Compare: https://github.com/galaxyproject/galaxy/compare/ac5a328e5f56...5a97b8feac49

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[galaxyproject/galaxy] 66947c: Provide backward-compatible galaxy.datatypes.check...
by GitHub 25 May '16

25 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 66947c20ef2c0db3532d7e4f3edc5897d7d75ab7 https://github.com/galaxyproject/galaxy/commit/66947c20ef2c0db3532d7e4f3edc… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-23 (Mon, 23 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Provide backward-compatible galaxy.datatypes.checkers module. xref http://dev.list.galaxyproject.org/STACKS-error-td4669428.html Commit: 71f9d9621640ca77880a879da3a149467f5ec934 https://github.com/galaxyproject/galaxy/commit/71f9d9621640ca77880a879da3a1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Remove HTML_CHECK_LINES from checkers export. As suggested by @nsoranzo and @dannon, we will restore if and only if someone finds a datatype that uses it. Commit: c63bf911bc9cae4d0400a3f3fad03402c3f7a18a https://github.com/galaxyproject/galaxy/commit/c63bf911bc9cae4d0400a3f3fad0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Merge pull request #2389 from jmchilton/checkers_restore [16.04] Provide backward compatible galaxy.datatypes.checkers module... Commit: 50359e1633b5ba3c19360cb4ed2d690ea69dd412 https://github.com/galaxyproject/galaxy/commit/50359e1633b5ba3c19360cb4ed2d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Merge remote-tracking branch 'upstream/release_16.04' into dev Compare: https://github.com/galaxyproject/galaxy/compare/f0a1bc8cbdfa...50359e1633b5

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[galaxyproject/galaxy] 66947c: Provide backward-compatible galaxy.datatypes.check...
by GitHub 25 May '16

25 May '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: 66947c20ef2c0db3532d7e4f3edc5897d7d75ab7 https://github.com/galaxyproject/galaxy/commit/66947c20ef2c0db3532d7e4f3edc… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-23 (Mon, 23 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Provide backward-compatible galaxy.datatypes.checkers module. xref http://dev.list.galaxyproject.org/STACKS-error-td4669428.html Commit: 71f9d9621640ca77880a879da3a149467f5ec934 https://github.com/galaxyproject/galaxy/commit/71f9d9621640ca77880a879da3a1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Remove HTML_CHECK_LINES from checkers export. As suggested by @nsoranzo and @dannon, we will restore if and only if someone finds a datatype that uses it. Commit: c63bf911bc9cae4d0400a3f3fad03402c3f7a18a https://github.com/galaxyproject/galaxy/commit/c63bf911bc9cae4d0400a3f3fad0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: A lib/galaxy/datatypes/checkers.py M lib/galaxy/util/checkers.py Log Message: ----------- Merge pull request #2389 from jmchilton/checkers_restore [16.04] Provide backward compatible galaxy.datatypes.checkers module... Compare: https://github.com/galaxyproject/galaxy/compare/5db5e1395880...c63bf911bc9c

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[galaxyproject/infrastructure-playbook] c5c03b: Run Pulsar with supervisor on Jetstream
by GitHub 25 May '16

25 May '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: c5c03b561aa331a1029a5b4d7775370c4d4b941a https://github.com/galaxyproject/infrastructure-playbook/commit/c5c03b561aa… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M jetstreamiuenv/group_vars/controllers.yml M jetstreamiuenv/playbook.yml A jetstreamiuenv/templates/supervisor/pulsar.j2 M jetstreamtaccenv/group_vars/controllers.yml A jetstreamtaccenv/templates/supervisor/pulsar.j2 Log Message: ----------- Run Pulsar with supervisor on Jetstream

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[galaxyproject/infrastructure-playbook] 6a9f81: Remote Pulsar stuff for Jetstream @ IU
by GitHub 25 May '16

25 May '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 6a9f8174bf44a68b8c7a7010a984af4793d64835 https://github.com/galaxyproject/infrastructure-playbook/commit/6a9f8174bf4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M jetstreamiuenv/group_vars/controllers.yml M jetstreamiuenv/inventory M jetstreamiuenv/playbook.yml Log Message: ----------- Remote Pulsar stuff for Jetstream @ IU

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[galaxyproject/galaxy] 2e45e7: UI, history: correctly handle index API defaults
by GitHub 25 May '16

25 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2e45e77fa82b723ebb5dc6c398891c3a061c6961 https://github.com/galaxyproject/galaxy/commit/2e45e77fa82b723ebb5dc6c39889… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-model.js M static/maps/mvc/history/history-model.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-model.js Log Message: ----------- UI, history: correctly handle index API defaults Bypasses the histories.index default `deleted=False` flag when using HistoryCollection to fetch with `includeDeleted`. Commit: f0a1bc8cbdfa796e5293b66dbcc846ad6f624aa1 https://github.com/galaxyproject/galaxy/commit/f0a1bc8cbdfa796e5293b66dbcc8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-model.js M static/maps/mvc/history/history-model.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-model.js Log Message: ----------- Merge pull request #2413 from carlfeberhard/fix.history-collection UI, history: correctly handle index API defaults Compare: https://github.com/galaxyproject/galaxy/compare/81702e7fbaec...f0a1bc8cbdfa

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[galaxyproject/galaxy] 2eee6e: add is_target_available() to conda utils
by GitHub 25 May '16

25 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2eee6e2abc52a1ba37b4219d590bba023885ad02 https://github.com/galaxyproject/galaxy/commit/2eee6e2abc52a1ba37b4219d590b… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-05-23 (Mon, 23 May 2016) Changed paths: M lib/galaxy/tools/deps/conda_util.py Log Message: ----------- add is_target_available() to conda utils Commit: 53604369f21f6adb75e58909158d49f9deed54bc https://github.com/galaxyproject/galaxy/commit/53604369f21f6adb75e58909158d… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2016-05-23 (Mon, 23 May 2016) Changed paths: M lib/galaxy/tools/deps/commands.py Log Message: ----------- stdin and stdout needs a PIPE to retrive the stdout Commit: 0b3832b952bb47fa03486cad2fcd5b6f7daf3e0e https://github.com/galaxyproject/galaxy/commit/0b3832b952bb47fa03486cad2fcd… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-05-24 (Tue, 24 May 2016) Changed paths: M lib/galaxy/tools/deps/commands.py Log Message: ----------- Fix bad merge. Commit: 81702e7fbaece36a5ddbeb7c8ca9456c8b9b64f7 https://github.com/galaxyproject/galaxy/commit/81702e7fbaece36a5ddbeb7c8ca9… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/tools/deps/commands.py M lib/galaxy/tools/deps/conda_util.py Log Message: ----------- Merge pull request #2395 from bgruening/conda_search Add conda search function Compare: https://github.com/galaxyproject/galaxy/compare/b16ad40bee21...81702e7fbaec

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