galaxy-commits June 2016

galaxy-commits@lists.galaxyproject.org

1 participants
118 discussions

[galaxyproject/usegalaxy-playbook] 06672a: Updates for moving the Test Installer to galaxy04/...
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 06672adf11de9230b9f689fe5d309c1f57ff16ec https://github.com/galaxyproject/usegalaxy-playbook/commit/06672adf11de9230… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: M common/host_vars/galaxy05.tacc.utexas.edu.yml M templates/nginx/galaxy_test.j2 Log Message: ----------- Updates for moving the Test Installer to galaxy04/CVMFS

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[galaxyproject/usegalaxy-playbook] 5c56cf: Update Test and read installer-updated mutable con...
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5c56cfff0425a71e21d846d057c8a8349d0c3e27 https://github.com/galaxyproject/usegalaxy-playbook/commit/5c56cfff0425a71e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: M stage/group_vars/all.yml M stage/group_vars/galaxyservers.yml Log Message: ----------- Update Test and read installer-updated mutable configs from CVMFS

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[galaxyproject/infrastructure-playbook] 70f826: Add PSU stratum1 to clients
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 70f826f875e680ec37df454cc302aa22d0e21eb3 https://github.com/galaxyproject/infrastructure-playbook/commit/70f826f875e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: M galaxyenv/inventory M jetstreamiuenv/group_vars/cvmfsclients.yml M jetstreamtaccenv/group_vars/cvmfsclients.yml M roles/cvmfs/defaults/main.yml M taccenv/group_vars/galaxyservers.yml Log Message: ----------- Add PSU stratum1 to clients

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[galaxyproject/usegalaxy-playbook] 7429c6: Redirect a page from a faulty username that Chai w...
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 7429c6db3e877ac4b03dec577dec30e60cc78d53 https://github.com/galaxyproject/usegalaxy-playbook/commit/7429c6db3e877ac4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: M templates/nginx/usegalaxy_rewrites.conf.j2 Log Message: ----------- Redirect a page from a faulty username that Chai was using

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[galaxyproject/infrastructure-playbook] 33eb35: Scale back Jetstream usage with IU charging coming...
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 33eb35459be7e6a19aa46fc61a5bc6329d896656 https://github.com/galaxyproject/infrastructure-playbook/commit/33eb35459be… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: M jetstreamiuenv/group_vars/slurmclients.yml M jetstreamiuenv/inventory Log Message: ----------- Scale back Jetstream usage with IU charging coming soon

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[galaxyproject/infrastructure-playbook] 5af09f: Set up PSU stratum 1
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 5af09f869141b06f6922141dc3dddeb9185126dc https://github.com/galaxyproject/infrastructure-playbook/commit/5af09f86914… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: A galaxyenv/host_vars/cvmfs1-psu0.galaxyproject.org.yml M galaxyenv/inventory M roles/cvmfs/tasks/stratum0.yml M roles/cvmfs/tasks/stratum1.yml Log Message: ----------- Set up PSU stratum 1

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[galaxyproject/infrastructure-playbook] e4ecc4: Changes for managing CVMFS stratum 0s, add stratum...
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: e4ecc417bd191c115c7c1704789e89bcb11f8b44 https://github.com/galaxyproject/infrastructure-playbook/commit/e4ecc417bd1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: A galaxyenv/host_vars/cvmfs0-tacc0.galaxyproject.org.yml M galaxyenv/inventory M galaxyenv/playbook.yml A galaxyenv/secret_host_vars/cvmfs0-tacc0.galaxyproject.org.yml M roles/cvmfs/defaults/main.yml M roles/cvmfs/tasks/client.yml M roles/cvmfs/tasks/main.yml A roles/cvmfs/tasks/stratum0.yml M roles/cvmfs/tasks/stratum1.yml Log Message: ----------- Changes for managing CVMFS stratum 0s, add stratum 0 @ TACC

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[galaxyproject/galaxy] 6da322: Update Galaxy testing to target latest galaxy-lib.
by GitHub 01 Jun '16

01 Jun '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6da322344951bf40d31fff0136bf152d18c6f1f6 https://github.com/galaxyproject/galaxy/commit/6da322344951bf40d31fff0136bf… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-31 (Tue, 31 May 2016) Changed paths: M lib/galaxy/tools/parser/xml.py M lib/galaxy/tools/verify/__init__.py M test/base/twilltestcase.py A test/functional/tools/checksum.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Update Galaxy testing to target latest galaxy-lib. Incorporates https://github.com/galaxyproject/galaxy-lib/pull/10 which modifies the interface to the test output verification code to allow reuse from within Planemo in both non-tool and non-Galaxy contexts. I also think this represents a better separation of concerns. One upshot of this is that CWL-style checksum verification is now possible from within Galaxy tools - a test case of this is included. Commit: 25a26d8c9c4f21e84e39741c98755f10c4519d8b https://github.com/galaxyproject/galaxy/commit/25a26d8c9c4f21e84e39741c9875… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2016-06-01 (Wed, 01 Jun 2016) Changed paths: M lib/galaxy/tools/parser/xml.py M lib/galaxy/tools/verify/__init__.py M test/base/twilltestcase.py A test/functional/tools/checksum.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Merge pull request #2436 from jmchilton/galaxy_lib_testing_update Update Galaxy testing to target latest galaxy-lib. Compare: https://github.com/galaxyproject/galaxy/compare/835797c4bacf...25a26d8c9c4f

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galaxy-commits June 2016