Branch: refs/heads/release_17.01
Home: https://github.com/galaxyproject/galaxy
Commit: f53b6474828d1f8ab1170630ce5851bb913ebec7
https://github.com/galaxyproject/galaxy/commit/f53b6474828d1f8ab1170630ce58…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-17 (Fri, 17 Feb 2017)
Changed paths:
M lib/galaxy/tools/deps/conda_util.py
Log Message:
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WIP: Fix for conda=4.3
Commit: d37ed7e7dadcf568b22836f477ce5afd2a377af7
https://github.com/galaxyproject/galaxy/commit/d37ed7e7dadcf568b22836f477ce…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-17 (Fri, 17 Feb 2017)
Changed paths:
M lib/galaxy/tools/deps/conda_util.py
Log Message:
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Adjust offline fix to work for a broader range of potential target Condas.
This logic could in theory be backported all the way to 16.01 I suppose now.
Commit: 1e3c9ab945c4616510b5b4ff2726aab89585bef4
https://github.com/galaxyproject/galaxy/commit/1e3c9ab945c4616510b5b4ff2726…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-20 (Mon, 20 Feb 2017)
Changed paths:
M lib/galaxy/tools/deps/conda_util.py
A test/functional/tools/mulled_example_multi_incomplete.xml
M test/functional/tools/samples_tool_conf.xml
Log Message:
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More revisions to fixing --offline mode to Conda.
Incorporate package extraction fixes thanks to @nsoranzo, the fix for version 4.1 and 4.0 thanks to @mvdbeek, a comment for @bgruening and a new test tool that makes it a bit easier to test this.
Commit: 0024aa458216589589d35b9366c6347c0c280860
https://github.com/galaxyproject/galaxy/commit/0024aa458216589589d35b9366c6…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-20 (Mon, 20 Feb 2017)
Changed paths:
M test/functional/tools/mulled_example_multi_incomplete.xml
Log Message:
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Add a clarification to new test tool.
Commit: f6cc1dcf077f9d98c38afdd93d47e60c42ac06e5
https://github.com/galaxyproject/galaxy/commit/f6cc1dcf077f9d98c38afdd93d47…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2017-02-20 (Mon, 20 Feb 2017)
Changed paths:
M lib/galaxy/tools/deps/conda_util.py
A test/functional/tools/mulled_example_multi_incomplete.xml
M test/functional/tools/samples_tool_conf.xml
Log Message:
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Merge pull request #3632 from jmchilton/conda_43_fix
[17.01] Fix Conda --offline logic for bug in 4.0,4.1,4.3.
Compare: https://github.com/galaxyproject/galaxy/compare/851f08cb00ea...f6cc1dcf077f
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 0e9eb78636da19c68ff3c981ff8090b63a7d11ae
https://github.com/galaxyproject/galaxy/commit/0e9eb78636da19c68ff3c981ff80…
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2017-02-14 (Tue, 14 Feb 2017)
Changed paths:
M doc/source/releases/17.01_announce.rst
Log Message:
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deprecate repair repository feature
Commit: 29d229cedd697ff79595b223d651dd0d97ded457
https://github.com/galaxyproject/galaxy/commit/29d229cedd697ff79595b223d651…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-15 (Wed, 15 Feb 2017)
Changed paths:
M doc/source/releases/17.01_announce.rst
Log Message:
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Merge pull request #3615 from martenson/release_17.01
[17.01] deprecate repair repository feature
Commit: ac191f5f2a10c003788a291501331b68fb521bc7
https://github.com/galaxyproject/galaxy/commit/ac191f5f2a10c003788a29150133…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-16 (Thu, 16 Feb 2017)
Changed paths:
M lib/galaxy/model/__init__.py
M lib/galaxy/tools/parameters/basic.py
Log Message:
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[17.01] Make active_datasets_children_and_roles just active_datasets_and_roles.
I guess somewhere in the tool building process we eliminated children from appearing the form. Remove unused code that used the children selector in the tool form.
Commit: eb42d130d34c9393f3386ba115de6fe561e9ef18
https://github.com/galaxyproject/galaxy/commit/eb42d130d34c9393f3386ba115de…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-16 (Thu, 16 Feb 2017)
Changed paths:
M test/unit/tools/test_data_parameters.py
M test/unit/tools/test_execution.py
Log Message:
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Fix unit tests for that last commit.
Commit: d2ec75084b2eeae30ce61168462fec03f1211b6e
https://github.com/galaxyproject/galaxy/commit/d2ec75084b2eeae30ce61168462f…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2017-02-16 (Thu, 16 Feb 2017)
Changed paths:
M lib/galaxy/model/__init__.py
M lib/galaxy/tools/parameters/basic.py
M test/unit/tools/test_data_parameters.py
M test/unit/tools/test_execution.py
Log Message:
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Merge pull request #3624 from jmchilton/active_children_drop
[17.01] Drop children from query that prefetches data for dataset matching.
Commit: f6649f890499a2e4569057e4b1921f0c95426e11
https://github.com/galaxyproject/galaxy/commit/f6649f890499a2e4569057e4b192…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2017-02-16 (Thu, 16 Feb 2017)
Changed paths:
M doc/source/releases/17.01_announce.rst
M lib/galaxy/model/__init__.py
M lib/galaxy/tools/parameters/basic.py
M test/unit/tools/test_data_parameters.py
M test/unit/tools/test_execution.py
Log Message:
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Merge branch 'release_17.01' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/89e32ee526e7...f6649f890499
Branch: refs/heads/release_17.01
Home: https://github.com/galaxyproject/galaxy
Commit: ac191f5f2a10c003788a291501331b68fb521bc7
https://github.com/galaxyproject/galaxy/commit/ac191f5f2a10c003788a29150133…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-16 (Thu, 16 Feb 2017)
Changed paths:
M lib/galaxy/model/__init__.py
M lib/galaxy/tools/parameters/basic.py
Log Message:
-----------
[17.01] Make active_datasets_children_and_roles just active_datasets_and_roles.
I guess somewhere in the tool building process we eliminated children from appearing the form. Remove unused code that used the children selector in the tool form.
Commit: eb42d130d34c9393f3386ba115de6fe561e9ef18
https://github.com/galaxyproject/galaxy/commit/eb42d130d34c9393f3386ba115de…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-02-16 (Thu, 16 Feb 2017)
Changed paths:
M test/unit/tools/test_data_parameters.py
M test/unit/tools/test_execution.py
Log Message:
-----------
Fix unit tests for that last commit.
Commit: d2ec75084b2eeae30ce61168462fec03f1211b6e
https://github.com/galaxyproject/galaxy/commit/d2ec75084b2eeae30ce61168462f…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2017-02-16 (Thu, 16 Feb 2017)
Changed paths:
M lib/galaxy/model/__init__.py
M lib/galaxy/tools/parameters/basic.py
M test/unit/tools/test_data_parameters.py
M test/unit/tools/test_execution.py
Log Message:
-----------
Merge pull request #3624 from jmchilton/active_children_drop
[17.01] Drop children from query that prefetches data for dataset matching.
Compare: https://github.com/galaxyproject/galaxy/compare/29d229cedd69...d2ec75084b2e