March 2017 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] a7ec0c: Add datatypes for soon coming PlantTribes Galaxy t...
by GitHub 07 Mar '17

07 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a7ec0c8579267adf6355e6f678b734e3f1b63cc9 https://github.com/galaxyproject/galaxy/commit/a7ec0c8579267adf6355e6f678b7… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/text.py Log Message: ----------- Add datatypes for soon coming PlantTribes Galaxy tools. Commit: 1b12259739e28bc69e68576a76aefcd61ee99358 https://github.com/galaxyproject/galaxy/commit/1b12259739e28bc69e68576a76ae… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-07 (Tue, 07 Mar 2017) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/text.py Log Message: ----------- Merge pull request #3698 from gregvonkuster/ptformats Add datatypes for soon coming PlantTribes Galaxy tools. Compare: https://github.com/galaxyproject/galaxy/compare/9ccb0953ad63...1b12259739e2

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[galaxyproject/galaxy] 570401: Implement initial collection builder UX test cases...
by GitHub 07 Mar '17

07 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5704013301f8b185fbc55324a79ab58937a48230 https://github.com/galaxyproject/galaxy/commit/5704013301f8b185fbc55324a79a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation-data.yml A test/selenium_tests/test_collection_builders.py Log Message: ----------- Implement initial collection builder UX test cases. Exercise list and paired builder's most basic functionality. Commit: 8800376eb41d262b41862b3a1ad160218b47d45d https://github.com/galaxyproject/galaxy/commit/8800376eb41d262b41862b3a1ad1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Improved Selenium exception messages. For many common waiting operations used throughout many tests: ``` TimeoutException: Message: ``` Will become something like ``` TimeoutException: Message: Timeout waiting on CSS selector [#dataset-adb5f5c93f827949.state-failed] to become visible. ``` For HID waiting I've added the state and HID as well - so something like this: ``` TimeoutException: Message: Failed waiting on history item 1 state to change to [ok] current state [failed]. Timeout waiting on CSS selector [#dataset-adb5f5c93f827949.state-failed] to become visible. ``` Commit: 9ccb0953ad63aa46464a0ef8ec3bb6d5d1944539 https://github.com/galaxyproject/galaxy/commit/9ccb0953ad63aa46464a0ef8ec3b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-07 (Tue, 07 Mar 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation-data.yml A test/selenium_tests/test_collection_builders.py Log Message: ----------- Merge pull request #3716 from jmchilton/selenium_uploads_0 Selenium Testing Improvements Compare: https://github.com/galaxyproject/galaxy/compare/656a0f396ed6...9ccb0953ad63

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[galaxyproject/galaxy] 006801: Escape FTP filename. Thanks @yhoogstrate
by GitHub 07 Mar '17

07 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 006801ba1aace0a58f0ae90ba6a6777dfb834b58 https://github.com/galaxyproject/galaxy/commit/006801ba1aace0a58f0ae90ba6a6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-07 (Tue, 07 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js M static/maps/mvc/upload/upload-ftp.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/upload/upload-ftp.js Log Message: ----------- Escape FTP filename. Thanks @yhoogstrate Commit: 656a0f396ed6d64a8010d9a6a32f138539f0b296 https://github.com/galaxyproject/galaxy/commit/656a0f396ed6d64a8010d9a6a32f… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2017-03-07 (Tue, 07 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js M static/maps/mvc/upload/upload-ftp.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/upload/upload-ftp.js Log Message: ----------- Merge pull request #3722 from dannon/escape_ftp_filename Filename handling for FTP upload Compare: https://github.com/galaxyproject/galaxy/compare/b8b773929267...656a0f396ed6

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[galaxyproject/galaxy] 4c4f78: Swap to using tag values to store name instead of ...
by GitHub 06 Mar '17

06 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4c4f78857b7141227e6ac320c36aad7c3429b7b5 https://github.com/galaxyproject/galaxy/commit/4c4f78857b7141227e6ac320c36a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M lib/galaxy/managers/hdas.py Log Message: ----------- Swap to using tag values to store name instead of child values. Commit: 2e5e6bb028165a735908543a063396f03bed375e https://github.com/galaxyproject/galaxy/commit/2e5e6bb028165a735908543a0633… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/style/less/ui.less M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/style/blue/base.css Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into nametags_to_value Commit: d20e19e85a11ab8cf7eaff4fd0b3ee3dee337ff2 https://github.com/galaxyproject/galaxy/commit/d20e19e85a11ab8cf7eaff4fd0b3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M lib/galaxy/tools/parameters/basic.py M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Include values in tags and tag selection lgoic Commit: 942f0d98d912196e95cfbb6f390c321676c28bce https://github.com/galaxyproject/galaxy/commit/942f0d98d912196e95cfbb6f390c… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Only compose tag:value one time on the client. Commit: 278da1b35653aa1ad5835b74206bb46bb4d6373a https://github.com/galaxyproject/galaxy/commit/278da1b35653aa1ad5835b74206b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into nametags_to_value Commit: f8e6b84998ab13cc99037c5eda3425f81329cbe5 https://github.com/galaxyproject/galaxy/commit/f8e6b84998ab13cc99037c5eda34… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M lib/galaxy/tools/parameters/basic.py M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Compose tag:value serverside -- we don't benefit from having them split when shipped (yet) Commit: 477626385c14e3df00aa654194dd8502c064c5d7 https://github.com/galaxyproject/galaxy/commit/477626385c14e3df00aa654194dd… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Filter tags by query term Commit: 192d75a4654411ad242819536a7968703697f524 https://github.com/galaxyproject/galaxy/commit/192d75a4654411ad242819536a79… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Strip hanging extra comma. Commit: b8b7739292676ba928664417be771bd6e3f8f087 https://github.com/galaxyproject/galaxy/commit/b8b7739292676ba928664417be77… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M lib/galaxy/managers/hdas.py M lib/galaxy/tools/parameters/basic.py M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Merge pull request #3719 from dannon/nametags_to_value Use values for 'name'tags instead of child tags. Compare: https://github.com/galaxyproject/galaxy/compare/e54792f4263e...b8b773929267

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[galaxyproject/galaxy] 496f47: Fix tag escaping
by GitHub 06 Mar '17

06 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 496f476b300733d818062fcace7e8d1a61517abc https://github.com/galaxyproject/galaxy/commit/496f476b300733d818062fcace7e… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Fix tag escaping Commit: a52695dee6b179ed6cb24eaeb7146c946b28ccc9 https://github.com/galaxyproject/galaxy/commit/a52695dee6b179ed6cb24eaeb714… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Escape title for select labels Commit: e54792f4263ed5ddacc1044fe0b2182735732fdb https://github.com/galaxyproject/galaxy/commit/e54792f4263ed5ddacc1044fe0b2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Merge pull request #3720 from guerler/escape_tags Fix tag escaping Compare: https://github.com/galaxyproject/galaxy/compare/0d95bf43ad84...e54792f4263e

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[galaxyproject/galaxy] ecaf1b: Show tags in select search field
by GitHub 06 Mar '17

06 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ecaf1be02f2364a2494e7adabd3b8733e194baf7 https://github.com/galaxyproject/galaxy/commit/ecaf1be02f2364a2494e7adabd3b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/style/less/ui.less M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/style/blue/base.css Log Message: ----------- Show tags in select search field Commit: e606dbdacbbad0b604f5395c1140571d9a219984 https://github.com/galaxyproject/galaxy/commit/e606dbdacbbad0b604f5395c1140… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/style/less/ui.less M static/style/blue/base.css Log Message: ----------- Fix style Commit: 0d95bf43ad84f014b404624a8e41f69f55b2a132 https://github.com/galaxyproject/galaxy/commit/0d95bf43ad84f014b404624a8e41… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/style/less/ui.less M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/style/blue/base.css Log Message: ----------- Merge pull request #3718 from guerler/add_tags_to_label_000 Show tags in select search field Compare: https://github.com/galaxyproject/galaxy/compare/5055283f49d7...0d95bf43ad84

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[galaxyproject/galaxy] 9f4764: Preserve tags (ignoring collection handling for no...
by GitHub 06 Mar '17

06 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9f4764f22cc63f7a734b9ea98707bfcb842aed14 https://github.com/galaxyproject/galaxy/commit/9f4764f22cc63f7a734b9ea98707… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Preserve tags (ignoring collection handling for now) when running tools. Commit: 31d222c91031775629896feb027e00ea535ef7d9 https://github.com/galaxyproject/galaxy/commit/31d222c91031775629896feb027e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/style/less/history.less M static/maps/mvc/history/hda-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js M static/style/blue/base.css Log Message: ----------- 'name' tag rendering, very basic, needs styling and loading fixes Commit: f6353c28f6f3a7012daf1eb95a7f7bcfd1d58d7c https://github.com/galaxyproject/galaxy/commit/f6353c28f6f3a7012daf1eb95a7f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M client/galaxy/style/less/history.less M static/style/blue/base.css Log Message: ----------- Fix underlines in nametags Commit: 9e5008984fc3ce1fd8359acfe502b3010ca76c1f https://github.com/galaxyproject/galaxy/commit/9e5008984fc3ce1fd8359acfe502… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M static/maps/mvc/history/hda-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js Log Message: ----------- nametags first, then hid+title Commit: ef1344f03f291468b87c89d90b3a0f06ec9b0a79 https://github.com/galaxyproject/galaxy/commit/ef1344f03f291468b87c89d90b3a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M client/galaxy/style/less/history.less M static/style/blue/base.css Log Message: ----------- Adjust margins on labels Commit: a144ce58939b122cc1bfb0575081a2082942e773 https://github.com/galaxyproject/galaxy/commit/a144ce58939b122cc1bfb0575081… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M lib/galaxy/managers/hdas.py Log Message: ----------- Swap tags to default view for hdas -- may need to revisit this if it proves too expensive. Commit: 4b7fea8d3fe0afa062213f81a75003cac593ad74 https://github.com/galaxyproject/galaxy/commit/4b7fea8d3fe0afa062213f81a750… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M static/maps/mvc/history/hda-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js Log Message: ----------- Adjust positioning again for nametags, below the standard title but still visible above the fold. Commit: a3ab46ef26031ba4c1fb22ebd0232bdb930651e5 https://github.com/galaxyproject/galaxy/commit/a3ab46ef26031ba4c1fb22ebd023… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-03 (Fri, 03 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M lib/galaxy/managers/hdas.py M static/maps/mvc/history/hda-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js Log Message: ----------- Swap to a 'nametags' field in the high level view instead of returning all tags. TODO: Optimize this Commit: 861368ae1c7fa21f4ee7b55fbb682f78e07ece9d https://github.com/galaxyproject/galaxy/commit/861368ae1c7fa21f4ee7b55fbb68… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-03 (Fri, 03 Mar 2017) Changed paths: M lib/galaxy/managers/hdas.py Log Message: ----------- Remove dead code from prior work in nametag collection, change to user_tname usage. Commit: 5055283f49d73b7eb3b420875dfe8ccc1adb85de https://github.com/galaxyproject/galaxy/commit/5055283f49d73b7eb3b420875dfe… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/style/less/history.less M lib/galaxy/managers/hdas.py M lib/galaxy/tools/actions/__init__.py A static/maps/analysis.js.map A static/maps/app.js.map A static/maps/app/analysis.js.map M static/maps/mvc/history/hda-li.js.map A static/scripts/analysis.js A static/scripts/app.js A static/scripts/app/analysis.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js M static/style/blue/base.css Log Message: ----------- Merge branch 'tags_in_history' into dev Compare: https://github.com/galaxyproject/galaxy/compare/179e58c8b3a7...5055283f49d7

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[galaxyproject/galaxy] ad3025: Touch up Galaxy testing documentation.
by GitHub 06 Mar '17

06 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ad3025f46a00190674bbc4dbc3bfab16983f9cb4 https://github.com/galaxyproject/galaxy/commit/ad3025f46a00190674bbc4dbc3bf… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M run_tests.sh M test/TESTING.md Log Message: ----------- Touch up Galaxy testing documentation. Commit: 179e58c8b3a7d10fa15e238ec7d2f982aa3fed00 https://github.com/galaxyproject/galaxy/commit/179e58c8b3a7d10fa15e238ec7d2… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M run_tests.sh M test/TESTING.md Log Message: ----------- Merge pull request #3715 from jmchilton/test_docs_0 Touch up Galaxy testing documentation. Compare: https://github.com/galaxyproject/galaxy/compare/97d6e1b6c1ca...179e58c8b3a7

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[galaxyproject/galaxy] 7cc25c: Parse tags with datatoolparameter options
by GitHub 06 Mar '17

06 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7cc25c9082de5df6ff4ed89365f34f39dbbec545 https://github.com/galaxyproject/galaxy/commit/7cc25c9082de5df6ff4ed89365f3… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-01 (Wed, 01 Mar 2017) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Parse tags with datatoolparameter options Commit: a02c1cfda10e2b600e5209db7f7be8dfb0069467 https://github.com/galaxyproject/galaxy/commit/a02c1cfda10e2b600e5209db7f7b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-01 (Wed, 01 Mar 2017) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Add tags to name Commit: 4d5a03ba55eeb1a1f3884999f3399fb47503cbcc https://github.com/galaxyproject/galaxy/commit/4d5a03ba55eeb1a1f3884999f339… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-01 (Wed, 01 Mar 2017) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Remove brackets Commit: ca238c4323a9d8efd8bb6fca06da5dd87d86032f https://github.com/galaxyproject/galaxy/commit/ca238c4323a9d8efd8bb6fca06da… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M test/unit/tools/test_data_parameters.py M test/unit/tools/test_evaluation.py Log Message: ----------- Add tags to mock hda Commit: 2135e63f8e144e21c926c8ea593acb5ce9615069 https://github.com/galaxyproject/galaxy/commit/2135e63f8e144e21c926c8ea593a… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M lib/galaxy/tools/parameters/basic.py M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Filter tags regardless of given select field label Commit: 7e19245c8af5b203c0a76f2ab5eee5a1856fdded https://github.com/galaxyproject/galaxy/commit/7e19245c8af5b203c0a76f2ab5ee… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M test/unit/tools/test_evaluation.py Log Message: ----------- Fix spacing Commit: a93c29fa4a438b93016cb5e31d0e4ef88ca88029 https://github.com/galaxyproject/galaxy/commit/a93c29fa4a438b93016cb5e31d0e… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Add tag filtering for collections Commit: 82137b433cf00f2b83a00e08b71bdea2bfebf9bd https://github.com/galaxyproject/galaxy/commit/82137b433cf00f2b83a00e08b71b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-02 (Thu, 02 Mar 2017) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Fix append calling for collections Commit: 735f56ec95dba7d58d8d1dad922a01c3074af1ce https://github.com/galaxyproject/galaxy/commit/735f56ec95dba7d58d8d1dad922a… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-03 (Fri, 03 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Concat all tags to improve front-end performance Commit: 83df8d5c9653c8e213eed63aecb9377503eb42f2 https://github.com/galaxyproject/galaxy/commit/83df8d5c9653c8e213eed63aecb9… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-03 (Fri, 03 Mar 2017) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Attempt to prefetch tags when building active datasets list Commit: 6b2f9be75ab16e69a8fb1c72d10d169d20ab7854 https://github.com/galaxyproject/galaxy/commit/6b2f9be75ab16e69a8fb1c72d10d… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-03-03 (Fri, 03 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Use space instead of comma when concatenating tags Commit: 97d6e1b6c1ca56575c1297649fd0484c85e15a7a https://github.com/galaxyproject/galaxy/commit/97d6e1b6c1ca56575c1297649fd0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M test/unit/tools/test_data_parameters.py Log Message: ----------- Merge branch 'filter_dataset_tags' into dev Compare: https://github.com/galaxyproject/galaxy/compare/6e3a9661d45c...97d6e1b6c1ca

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[galaxyproject/galaxy] 075d53: Fix for transiently failing workflow test.
by GitHub 06 Mar '17

06 Mar '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 075d53af92ea2640ba3005f36354712b966ea98e https://github.com/galaxyproject/galaxy/commit/075d53af92ea2640ba3005f36354… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-02-24 (Fri, 24 Feb 2017) Changed paths: M test/api/test_workflows.py Log Message: ----------- Fix for transiently failing workflow test. The history can be complete before a workflow has fully scheduled if the workflow still has more jobs to schedule but all the current ones are complete. Commit: 6e3a9661d45cb239e116660888834ea8037b726b https://github.com/galaxyproject/galaxy/commit/6e3a9661d45cb239e11666088883… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-03-06 (Mon, 06 Mar 2017) Changed paths: M test/api/test_workflows.py Log Message: ----------- Merge pull request #3668 from jmchilton/workflow_transient_failing_test Fix for transiently failing workflow test. Compare: https://github.com/galaxyproject/galaxy/compare/b769da1b3d67...6e3a9661d45c

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