April 2017 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/ansible-galaxy] 5fef6e: Need a separate variable for managing errordocs wh...
by GitHub 13 Apr '17

13 Apr '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: 5fef6e20d066750f23b5868900a00338c864ce0b https://github.com/galaxyproject/ansible-galaxy/commit/5fef6e20d066750f23b5… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-13 (Thu, 13 Apr 2017) Changed paths: M README.md Log Message: ----------- Need a separate variable for managing errordocs when running a split user config

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[galaxyproject/usegalaxy-playbook] bd96bc: Drop the bootstrap script
by GitHub 12 Apr '17

12 Apr '17

Branch: refs/heads/reorg Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: bd96bc4406cc67bc067eeffaf5af66f1f52ea11f https://github.com/galaxyproject/usegalaxy-playbook/commit/bd96bc4406cc67bc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-04 (Tue, 04 Apr 2017) Changed paths: R bootstrap-ansible.bash Log Message: ----------- Drop the bootstrap script Commit: ed83ee9d3c5d3062441fb28cf02cf50fa585f4c0 https://github.com/galaxyproject/usegalaxy-playbook/commit/ed83ee9d3c5d3062… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-06 (Thu, 06 Apr 2017) Changed paths: M common_roles M roles/galaxyprojectdotorg.galaxy/README.md M roles/galaxyprojectdotorg.galaxy/defaults/main.yml M roles/galaxyprojectdotorg.galaxy/files/makepyc.py M roles/galaxyprojectdotorg.galaxy/handlers/main.yml M roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info M roles/galaxyprojectdotorg.galaxy/tasks/clone.yml M roles/galaxyprojectdotorg.galaxy/tasks/database.yml M roles/galaxyprojectdotorg.galaxy/tasks/dependencies.yml M roles/galaxyprojectdotorg.galaxy/tasks/download.yml M roles/galaxyprojectdotorg.galaxy/tasks/main.yml M roles/galaxyprojectdotorg.galaxy/tasks/mutable_setup.yml M roles/galaxyprojectdotorg.galaxy/tasks/static_setup.yml M roles/galaxyprojectdotorg.galaxy/tasks/virtualenv.yml M roles/galaxyprojectdotorg.nginx/README.md M roles/galaxyprojectdotorg.nginx/meta/.galaxy_install_info M roles/galaxyprojectdotorg.nginx/meta/main.yml M roles/galaxyprojectdotorg.nginx/tasks/main.yml A roles/galaxyprojectdotorg.nginx/tasks/pkgin.yml M roles/galaxyprojectdotorg.nginx/templates/epel-nginx.conf.j2 A roles/galaxyprojectdotorg.nginx/templates/pkgin-nginx.conf.j2 A roles/galaxyprojectdotorg.nginx/vars/pkgin.yml M roles/galaxyprojectdotorg.postgresql/files/get_repo_rpm_release.py M roles/galaxyprojectdotorg.postgresql/meta/.galaxy_install_info M roles/galaxyprojectdotorg.postgresql/tasks/main.yml M roles/galaxyprojectdotorg.postgresql/tasks/redhat.yml M roles/galaxyprojectdotorg.postgresql/templates/archive_wal.sh.j2 M roles/galaxyprojectdotorg.postgresql/templates/backup_working_wal.sh.j2 M roles/galaxyprojectdotorg.postgresql/templates/scheduled_backup.sh.j2 M roles/natefoo.postgresql_objects/README.md M roles/natefoo.postgresql_objects/meta/.galaxy_install_info M roles/natefoo.postgresql_objects/tasks/main.yml Log Message: ----------- Update roles Commit: 60df6e1d5c7879155576d7b98b880c9f74be94e6 https://github.com/galaxyproject/usegalaxy-playbook/commit/60df6e1d5c787915… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-07 (Fri, 07 Apr 2017) Changed paths: M production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample M production/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js M production/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako M production/files/interactive_environments/plugins/common/templates/ie.mako R production/files/interactive_environments/plugins/ethercalc/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml R production/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js R production/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako M production/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.xml M production/files/interactive_environments/plugins/jupyter/static/js/jupyter.js M production/files/interactive_environments/plugins/jupyter/templates/jupyter.mako M production/files/interactive_environments/plugins/neo/config/neo.ini.sample M production/files/interactive_environments/plugins/neo/static/js/neo.js M production/files/interactive_environments/plugins/neo/templates/neo.mako M production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample M production/files/interactive_environments/plugins/phinch/static/js/phinch.js M production/files/interactive_environments/plugins/phinch/templates/phinch.mako M production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample M production/files/interactive_environments/plugins/rstudio/static/js/rstudio.js M production/files/interactive_environments/plugins/rstudio/templates/rstudio.mako M production/files/interactive_environments/proxy/lib/mapper.js M roles/galaxyprojectdotorg.interactive_environments/meta/.galaxy_install_info M roles/galaxyprojectdotorg.interactive_environments/tasks/extract_component.yml M roles/galaxyprojectdotorg.interactive_environments/tasks/synchronize_components.yml Log Message: ----------- Merge branch 'master' of github.com:/galaxyproject/usegalaxy-playbook into reorg Commit: bad32b46a7af10c27f6e6889d10db1c58b8239c1 https://github.com/galaxyproject/usegalaxy-playbook/commit/bad32b46a7af10c2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-12 (Wed, 12 Apr 2017) Changed paths: M README.md M ansible.cfg R common/host_vars/galaxy01.tacc.utexas.edu.yml R common/host_vars/galaxy05.tacc.utexas.edu.yml R common/host_vars/radegast.galaxyproject.org.yml M common/inventory M common_roles A env/common/_inc_restart.yml A env/common/_inc_snapshot.yml A env/common/_inc_static.yml A env/common/config.yml A env/common/files/galaxy/config/disposable_email_blacklist.conf A env/common/files/galaxy/config/pulsar_jetstream_actions.yml A env/common/files/galaxy/dynamic_rules/bridges_select.py A env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py A env/common/files/galaxy/dynamic_rules/nvc_dynamic_memory.py A env/common/files/galaxy/dynamic_rules/reserved.py A env/common/files/galaxy/error/413/index.html A env/common/files/galaxy/error/502/index.shtml A env/common/files/galaxy/error/content_bg.png A env/common/files/galaxy/error/error_message_icon.png A env/common/files/galaxy/error/masthead_bg.png A env/common/files/galaxy/static/terms.html A env/common/files/galaxy/static/welcome_img/201511_France.png A env/common/files/galaxy/static/welcome_img/50PlusPublic.png A env/common/files/galaxy/static/welcome_img/60PlusOdometer1.png A env/common/files/galaxy/static/welcome_img/70PlusOdometer.png A env/common/files/galaxy/static/welcome_img/80PlusOdometer.png A env/common/files/galaxy/static/welcome_img/Ballaxy.png A env/common/files/galaxy/static/welcome_img/Barcelona_2015.png A env/common/files/galaxy/static/welcome_img/CARTGalaxy.png A env/common/files/galaxy/static/welcome_img/CPTGalaxy.png A 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env/common/templates/galaxy/config/reports.ini.j2 A env/common/templates/galaxy/static/welcome.html.j2 A env/common/templates/nginx/toolshed.j2 A env/common/templates/supervisor/galaxy.j2 A env/common/templates/supervisor/galaxy_datamanager.j2 A env/common/templates/supervisor/galaxy_gie_proxy.j2 A env/common/templates/supervisor/galaxy_group.j2 A env/common/templates/supervisor/galaxy_handler.j2 A env/common/templates/supervisor/galaxy_impersonate.j2 A env/common/templates/supervisor/galaxy_reports.j2 A env/common/templates/supervisor/toolshed.j2 A env/common/update.yml A env/common/update_shed.yml A env/test/_inc_config_post_tasks.yml A env/test/_inc_restart.yml A env/test/_inc_snapshot.yml A env/test/_inc_static.yml A env/test/config.yml A env/test/files/galaxy/config/builds.txt A env/test/files/galaxy/config/data_manager_conf.xml A env/test/files/galaxy/config/disposable_email_blacklist.conf A env/test/files/galaxy/config/job_metrics_conf.xml A env/test/files/galaxy/config/job_resource_params_conf.xml A env/test/files/galaxy/config/nagios_tool_conf.xml A env/test/files/galaxy/config/object_store_conf.xml A env/test/files/galaxy/config/pulsar_jetstream.yml A env/test/files/galaxy/config/pulsar_jetstream_actions.yml A env/test/files/galaxy/config/pulsar_stampede_actions.yml A env/test/files/galaxy/config/tool_conf.xml A env/test/files/galaxy/config/tool_data_table_conf.xml A env/test/files/galaxy/config/tool_sheds_conf.xml A env/test/files/galaxy/config/ucsc_build_sites.txt A env/test/files/galaxy/dynamic_rules/bridges_select.py A env/test/files/galaxy/dynamic_rules/jetstream.py A env/test/files/galaxy/dynamic_rules/multi_dynamic_walltime.py A env/test/files/galaxy/dynamic_rules/nvc_dynamic_memory.py A env/test/files/galaxy/dynamic_rules/reserved.py A env/test/files/galaxy/dynamic_rules/single_dynamic_memory.py A env/test/files/galaxy/error A env/test/files/galaxy/galaxy_version.yml A env/test/files/galaxy/nagios/echo_test_bridges.xml A env/test/files/galaxy/nagios/echo_test_cluster.xml A env/test/files/galaxy/nagios/echo_test_handler0.xml A env/test/files/galaxy/nagios/echo_test_handler1.xml A env/test/files/galaxy/nagios/echo_test_jetstream_iu.xml A env/test/files/galaxy/nagios/echo_test_jetstream_tacc.xml A env/test/files/galaxy/nagios/echo_test_stampede.xml A env/test/files/galaxy/static A env/test/files/galaxy/tool_list.yaml A env/test/files/galaxy/var/integrated_tool_panel.xml A env/test/files/galaxy/var/migrated_tools_conf.xml A env/test/files/galaxy/var/shed_data_manager_conf.xml A env/test/files/galaxy/var/shed_tool_conf.xml A env/test/files/galaxy/var/shed_tool_data_table_conf.xml A env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version A env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample A env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml A 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env/test/files/interactive_environments/proxy/lib/main.js A env/test/files/interactive_environments/proxy/lib/mapper.js A env/test/files/interactive_environments/proxy/lib/proxy.js A env/test/files/interactive_environments/proxy/package.json A env/test/files/pulsar A env/test/files/ssl A env/test/group_vars/all.yml A env/test/group_vars/dbservers/vars.yml A env/test/group_vars/dbservers/vault.yml A env/test/group_vars/ftpservers.yml A env/test/group_vars/galaxyservers/vars.yml A env/test/group_vars/galaxyservers/vault.yml A env/test/group_vars/galaxyswarmmanagers/vars.yml A env/test/group_vars/galaxyswarmmanagers/vault.yml A env/test/group_vars/galaxywebservers.yml A env/test/group_vars/pulsarservers/vars.yml A env/test/group_vars/pulsarservers/vault.yml A env/test/group_vars/sslservers A env/test/group_vars/supervisorservers/vars.yml A env/test/group_vars/supervisorservers/vault.yml A env/test/group_vars/webservers/vars.yml A env/test/group_vars/webservers/vault.yml A env/test/host_vars/br005.bridges.psc.edu.yml A env/test/host_vars/galaxy07.tacc.utexas.edu.yml A env/test/host_vars/jetstream-iu0.galaxyproject.org.yml A env/test/host_vars/jetstream-tacc0.galaxyproject.org.yml A env/test/host_vars/login5.stampede.tacc.utexas.edu.yml A env/test/inventory A env/test/inventory.static A env/test/pulsar.yml A env/test/restart.yml A env/test/snapshot.yml A env/test/stack.yml A env/test/static.yml A env/test/templates/galaxy/config/build_sites.yml.j2 A env/test/templates/galaxy/config/galaxy.ini.j2 A env/test/templates/galaxy/config/job_conf.xml.j2 A env/test/templates/galaxy/config/reports.ini.j2 A env/test/templates/galaxy/config/uwsgi.ini.j2 A env/test/templates/galaxy/static A env/test/templates/nginx/galaxy_test.j2 A env/test/templates/nginx/tacc_protected.j2 A env/test/templates/supervisor A env/test/update.yml A env/testtoolshed/files/ssl A env/testtoolshed/group_vars/sslservers A env/testtoolshed/group_vars/toolsheddbservers.yml A 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files/pulsar/test.galaxyproject.org/config/bridges_dependency_resolvers_con… R files/toolshed/testtoolshed.g2.bx.psu.edu/error R galaxy_configs.yml R galaxy_infrastructure.yml R galaxy_static.yml R pulsar.yml R roles/errordocs/tasks/main.yml M roles/galaxyprojectdotorg.galaxy/README.md M roles/galaxyprojectdotorg.galaxy/defaults/main.yml A roles/galaxyprojectdotorg.galaxy/files/errordocs/content_bg.png A roles/galaxyprojectdotorg.galaxy/files/errordocs/error_message_icon.png A roles/galaxyprojectdotorg.galaxy/files/errordocs/masthead_bg.png M roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info A roles/galaxyprojectdotorg.galaxy/tasks/errordocs.yml M roles/galaxyprojectdotorg.galaxy/tasks/main.yml A roles/galaxyprojectdotorg.galaxy/templates/errordocs/413/index.html.j2 A roles/galaxyprojectdotorg.galaxy/templates/errordocs/502/index.shtml.j2 A roles/galaxyprojectdotorg.galaxy_toolshed/README.md M roles/galaxyprojectdotorg.galaxy_toolshed/defaults/main.yml M roles/galaxyprojectdotorg.galaxy_toolshed/handlers/main.yml A roles/galaxyprojectdotorg.galaxy_toolshed/meta/.galaxy_install_info A roles/galaxyprojectdotorg.galaxy_toolshed/meta/main.yml M roles/galaxyprojectdotorg.galaxy_toolshed/tasks/database.yml M roles/galaxyprojectdotorg.galaxy_toolshed/tasks/main.yml M roles/galaxyprojectdotorg.galaxy_toolshed/tasks/static_setup.yml A roles/galaxyprojectdotorg.galaxy_toolshed/templates/user_info.xml.j2 M roles/galaxyprojectdotorg.postgresql/defaults/main.yml M roles/galaxyprojectdotorg.postgresql/meta/.galaxy_install_info M roles/galaxyprojectdotorg.postgresql/templates/archive_wal.sh.j2 A roles/galaxyprojectdotorg.proftpd/.travis.yml A roles/galaxyprojectdotorg.proftpd/README.md A roles/galaxyprojectdotorg.proftpd/defaults/main.yml A roles/galaxyprojectdotorg.proftpd/handlers/main.yml A roles/galaxyprojectdotorg.proftpd/meta/main.yml A roles/galaxyprojectdotorg.proftpd/tasks/debian.yml A roles/galaxyprojectdotorg.proftpd/tasks/galaxy_auth.yml A roles/galaxyprojectdotorg.proftpd/tasks/main.yml A roles/galaxyprojectdotorg.proftpd/tasks/redhat.yml A roles/galaxyprojectdotorg.proftpd/tasks/tls.yml A roles/galaxyprojectdotorg.proftpd/templates/galaxy_auth.conf.j2 A roles/galaxyprojectdotorg.proftpd/templates/server.conf.j2 A roles/galaxyprojectdotorg.proftpd/templates/tls.conf.j2 A roles/galaxyprojectdotorg.proftpd/tests/inventory A roles/galaxyprojectdotorg.proftpd/tests/test.yml A roles/galaxyprojectdotorg.proftpd/vars/debian.yml A roles/galaxyprojectdotorg.proftpd/vars/main.yml A roles/galaxyprojectdotorg.proftpd/vars/redhat.yml M roles/usegalaxy/tasks/main.yml A roles/usegalaxy/templates/galaxyctl.j2 A roles/usegalaxy/templates/supervisorctl.j2 A roles/usegalaxy/templates/supervisord.conf.j2 M roles/usegalaxy_admin/tasks/main.yml A roles/usegalaxy_cvmfs/tasks/main.yml A roles/usegalaxy_cvmfs/tasks/snapshot.yml A roles/usegalaxy_cvmfs/tasks/update.yml A roles/usegalaxy_cvmfs/tasks/wipecache.yml M roles/usegalaxy_privileged/tasks/main.yml M roles/usegalaxy_static/tasks/main.yml R stage/files/interactive_environments/plugins/.ansible_ie_role_current_version R stage/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample R stage/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml R stage/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js R stage/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako R stage/files/interactive_environments/plugins/common/templates/ie.mako R stage/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample R stage/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml R stage/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js R stage/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako R stage/files/interactive_environments/plugins/interactive_environments.dtd R stage/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample R stage/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample R stage/files/interactive_environments/plugins/jupyter/config/jupyter.xml R stage/files/interactive_environments/plugins/jupyter/static/js/jupyter.js R stage/files/interactive_environments/plugins/jupyter/templates/jupyter.mako R stage/files/interactive_environments/plugins/neo/config/allowed_images.yml.sample R stage/files/interactive_environments/plugins/neo/config/neo.ini.sample R stage/files/interactive_environments/plugins/neo/config/neo.xml R stage/files/interactive_environments/plugins/neo/static/js/neo.js R stage/files/interactive_environments/plugins/neo/templates/neo.mako R stage/files/interactive_environments/plugins/phinch/config/phinch.ini.sample R stage/files/interactive_environments/plugins/phinch/config/phinch.xml R stage/files/interactive_environments/plugins/phinch/static/js/phinch.js R stage/files/interactive_environments/plugins/phinch/templates/phinch.mako R stage/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample R stage/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample R stage/files/interactive_environments/plugins/rstudio/config/rstudio.xml R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/prng4.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rng.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rsa.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.big.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.min.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/base64.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/jsbn.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/prng4.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rng.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rsa.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/base64.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/jsbn.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/prng4.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rng.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rsa.js R stage/files/interactive_environments/plugins/rstudio/static/js/rstudio.js R stage/files/interactive_environments/plugins/rstudio/templates/rstudio.mako R stage/files/interactive_environments/proxy/.ansible_ie_role_current_version R stage/files/interactive_environments/proxy/Dockerfile R stage/files/interactive_environments/proxy/README.md R stage/files/interactive_environments/proxy/lib/main.js R stage/files/interactive_environments/proxy/lib/mapper.js R stage/files/interactive_environments/proxy/lib/proxy.js R stage/files/interactive_environments/proxy/package.json R stage/galaxy_version.yml R stage/group_vars/all.yml R stage/group_vars/galaxydbservers.yml R stage/group_vars/galaxyservers.yml R stage/group_vars/pulsarservers.yml R stage/group_vars/toolsheddbservers.yml R stage/group_vars/toolshedservers.yml R stage/host_vars/br005.bridges.psc.edu.yml R stage/host_vars/galaxy01.tacc.utexas.edu.yml R stage/host_vars/jetstream-iu0.galaxyproject.org.yml R stage/host_vars/jetstream-tacc0.galaxyproject.org.yml R stage/host_vars/login5.stampede.tacc.utexas.edu.yml R stage/secret_vars/galaxydbservers.yml R stage/secret_vars/galaxyservers.yml R stage/secret_vars/pulsarservers.yml R templates/galaxy/test.galaxyproject.org/config/build_sites.yml.j2 R templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 R templates/galaxy/test.galaxyproject.org/config/reports.ini.j2 R templates/galaxy/test.galaxyproject.org/config/uwsgi.ini.j2 R templates/galaxy/test.galaxyproject.org/static R templates/nginx/galaxy_main_installer.j2 R templates/nginx/galaxy_test.j2 R templates/nginx/tacc_protected.j2 R templates/nginx/testtoolshed.j2 R templates/nginx/toolshed.j2 R templates/supervisor/galaxy_datamanager.j2 R templates/supervisor/galaxy_installer.j2 R templates/supervisor/testtoolshed.j2 R templates/supervisor/toolshed.j2 R toolshed.yml Log Message: ----------- Reorganize and update playbook for complete redeployment of Test on to a new VM. The new VM was deployed entirely with infrastructure-playbook and this playbook. The Test Tool Shed was also reorganized due to the removal of `stage`. Coming soon: Main Commit: be93b172eb3ea3a4aa41e8a16b7027799a5d8533 https://github.com/galaxyproject/usegalaxy-playbook/commit/be93b172eb3ea3a4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-12 (Wed, 12 Apr 2017) Changed paths: M env/test/files/galaxy/galaxy_version.yml Log Message: ----------- Update Test Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/bd96bc4406cc^..…

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[galaxyproject/ansible-galaxy]
by GitHub 12 Apr '17

12 Apr '17

Branch: refs/tags/0.7.1 Home: https://github.com/galaxyproject/ansible-galaxy

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[galaxyproject/ansible-galaxy] 1bff19: Add error documents for nginx
by GitHub 12 Apr '17

12 Apr '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: 1bff199822c7c8456a6d2ff802ec98732c57a4d0 https://github.com/galaxyproject/ansible-galaxy/commit/1bff199822c7c8456a6d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-12 (Wed, 12 Apr 2017) Changed paths: M README.md M defaults/main.yml A files/errordocs/content_bg.png A files/errordocs/error_message_icon.png A files/errordocs/masthead_bg.png A tasks/errordocs.yml M tasks/main.yml A templates/errordocs/413/index.html.j2 A templates/errordocs/502/index.shtml.j2 Log Message: ----------- Add error documents for nginx

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[galaxyproject/galaxy] 9aa023: Fix for direct message routing using a 'real' exch...
by GitHub 12 Apr '17

12 Apr '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9aa02339e730988cc1174103e3091690f3c8a42d https://github.com/galaxyproject/galaxy/commit/9aa02339e730988cc1174103e309… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-29 (Wed, 29 Mar 2017) Changed paths: M lib/galaxy/queue_worker.py M lib/galaxy/queues.py Log Message: ----------- Fix for direct message routing using a 'real' exchange like rabbitmq -- this worked with local/database connections already, if accidentally. I want to do more refactoring of how these are configured, but am deferring that for now as it's not a priority. Commit: cda2b32ebeb9a02c44377ded8b1727d3bd2a394d https://github.com/galaxyproject/galaxy/commit/cda2b32ebeb9a02c44377ded8b17… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-04-08 (Sat, 08 Apr 2017) Changed paths: M lib/galaxy/queue_worker.py Log Message: ----------- Fix Instance is not bound to a Session by refreshing the tool_version_cache, just like we do when we reload the toolbox. Commit: 2396befa02df1083da56357b9210e9d62fdb4266 https://github.com/galaxyproject/galaxy/commit/2396befa02df1083da56357b9210… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-04-09 (Sun, 09 Apr 2017) Changed paths: M lib/galaxy/queue_worker.py M lib/galaxy/queues.py Log Message: ----------- Merge pull request #3846 from dannon/mq_routing_fix [17.01] Fix for direct message routing using a 'real' exchange like rabbitmq Commit: 93b366d75a99b3335a92be792c89443487bfd49d https://github.com/galaxyproject/galaxy/commit/93b366d75a99b3335a92be792c89… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-04-09 (Sun, 09 Apr 2017) Changed paths: M lib/galaxy/queue_worker.py Log Message: ----------- Merge pull request #3904 from mvdbeek/fix_instance_not_bound [17.01] Fix Instance is not bound to a Session Commit: 3e191c7ff4457ce4723c914d3ae9ad8157beecb5 https://github.com/galaxyproject/galaxy/commit/3e191c7ff4457ce4723c914d3ae9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-04-12 (Wed, 12 Apr 2017) Changed paths: M lib/galaxy/queue_worker.py M lib/galaxy/queues.py Log Message: ----------- Merge remote-tracking branch 'upstream/release_17.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/e7a4ae5c154e...3e191c7ff445

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[galaxyproject/usegalaxy-playbook] 5f58c1: Swap sanitize_whitelist to use mutable config dir
by GitHub 11 Apr '17

11 Apr '17

Branch: refs/heads/mutable_config_for_whitelist Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5f58c100f70ef653802c750b01d5ee7f5f0748da https://github.com/galaxyproject/usegalaxy-playbook/commit/5f58c100f70ef653… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-04-11 (Tue, 11 Apr 2017) Changed paths: M production/group_vars/galaxyservers.yml Log Message: ----------- Swap sanitize_whitelist to use mutable config dir

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[galaxyproject/galaxy] cda2b3: Fix Instance is not bound to a Session
by GitHub 09 Apr '17

09 Apr '17

Branch: refs/heads/release_17.01 Home: https://github.com/galaxyproject/galaxy Commit: cda2b32ebeb9a02c44377ded8b1727d3bd2a394d https://github.com/galaxyproject/galaxy/commit/cda2b32ebeb9a02c44377ded8b17… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-04-08 (Sat, 08 Apr 2017) Changed paths: M lib/galaxy/queue_worker.py Log Message: ----------- Fix Instance is not bound to a Session by refreshing the tool_version_cache, just like we do when we reload the toolbox. Commit: 93b366d75a99b3335a92be792c89443487bfd49d https://github.com/galaxyproject/galaxy/commit/93b366d75a99b3335a92be792c89… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-04-09 (Sun, 09 Apr 2017) Changed paths: M lib/galaxy/queue_worker.py Log Message: ----------- Merge pull request #3904 from mvdbeek/fix_instance_not_bound [17.01] Fix Instance is not bound to a Session Compare: https://github.com/galaxyproject/galaxy/compare/2396befa02df...93b366d75a99

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[galaxyproject/galaxy] 9aa023: Fix for direct message routing using a 'real' exch...
by GitHub 09 Apr '17

09 Apr '17

Branch: refs/heads/release_17.01 Home: https://github.com/galaxyproject/galaxy Commit: 9aa02339e730988cc1174103e3091690f3c8a42d https://github.com/galaxyproject/galaxy/commit/9aa02339e730988cc1174103e309… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-03-29 (Wed, 29 Mar 2017) Changed paths: M lib/galaxy/queue_worker.py M lib/galaxy/queues.py Log Message: ----------- Fix for direct message routing using a 'real' exchange like rabbitmq -- this worked with local/database connections already, if accidentally. I want to do more refactoring of how these are configured, but am deferring that for now as it's not a priority. Commit: 2396befa02df1083da56357b9210e9d62fdb4266 https://github.com/galaxyproject/galaxy/commit/2396befa02df1083da56357b9210… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-04-09 (Sun, 09 Apr 2017) Changed paths: M lib/galaxy/queue_worker.py M lib/galaxy/queues.py Log Message: ----------- Merge pull request #3846 from dannon/mq_routing_fix [17.01] Fix for direct message routing using a 'real' exchange like rabbitmq Compare: https://github.com/galaxyproject/galaxy/compare/3c080cae96aa...2396befa02df

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[galaxyproject/infrastructure-playbook] 33e4f2: add ftp rewrite to hub
by GitHub 07 Apr '17

07 Apr '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 33e4f2e997cbcb986c9f25fc010a6aa9fedf9e0e https://github.com/galaxyproject/infrastructure-playbook/commit/33e4f2e997c… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-04-07 (Fri, 07 Apr 2017) Changed paths: M common_roles M galaxyenv/templates/nginx/galaxyproject.j2 Log Message: ----------- add ftp rewrite to hub

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[galaxyproject/usegalaxy-playbook] 484c39: Fix GIE version bug
by GitHub 07 Apr '17

07 Apr '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 484c39c0d50cfe6a947da50e9afcd4d2ccc141a8 https://github.com/galaxyproject/usegalaxy-playbook/commit/484c39c0d50cfe6a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-04-07 (Fri, 07 Apr 2017) Changed paths: M production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample M production/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js M production/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako M production/files/interactive_environments/plugins/common/templates/ie.mako R production/files/interactive_environments/plugins/ethercalc/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml R production/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js R production/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako M production/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.xml M production/files/interactive_environments/plugins/jupyter/static/js/jupyter.js M production/files/interactive_environments/plugins/jupyter/templates/jupyter.mako M production/files/interactive_environments/plugins/neo/config/neo.ini.sample M production/files/interactive_environments/plugins/neo/static/js/neo.js M production/files/interactive_environments/plugins/neo/templates/neo.mako M production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample M production/files/interactive_environments/plugins/phinch/static/js/phinch.js M production/files/interactive_environments/plugins/phinch/templates/phinch.mako M production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample M production/files/interactive_environments/plugins/rstudio/static/js/rstudio.js M production/files/interactive_environments/plugins/rstudio/templates/rstudio.mako M production/files/interactive_environments/proxy/lib/mapper.js M roles/galaxyprojectdotorg.interactive_environments/meta/.galaxy_install_info M roles/galaxyprojectdotorg.interactive_environments/tasks/extract_component.yml M roles/galaxyprojectdotorg.interactive_environments/tasks/synchronize_components.yml Log Message: ----------- Fix GIE version bug

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